Ares
W niektórych przypadkach oprogramowanie z poniższej listy może wymagać posiadania dodatkowej licencji i może nie być ogólnodostępne dla wszystkich użytkowników PLGrid.
abaqus
Finite Element Analysis software for modeling, visualization and best-in-class implicit and explicit dynamics FEA.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2025 |
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| 2024 |
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| 2023 |
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| 2022 |
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abcluster
ABCluster searches the global as well as the local minima of flexible molecules and clusters.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.3-gfbf-2023a |
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abinit
ABINIT is a package whose main program allows one to find the total energy, charge density and electronic structure of systems made of electrons and nuclei (molecules and periodic solids) within Density Functional Theory (DFT), using pseudopotentials and a planewave or wavelet basis.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 9.6.2-intel-2021b |
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| 8.10.3-foss-2019b |
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abseil
Abseil is an open-source collection of C++ library code designed to augment the C++ standard library. The Abseil library code is collected from Google's own C++ code base, has been extensively tested and used in production, and is the same code we depend on in our daily coding lives.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 20230125.3-gcccore-12.3.0 |
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abyss
Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.3.7-foss-2022a |
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| 2.3.4-foss-2021b |
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actc
ACTC converts independent triangles into triangle strips or fans.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.1-gcccore-11.3.0 |
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| 1.1-gcccore-10.2.0 |
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adapterremoval
AdapterRemoval searches for and removes remnant adapter sequences from High-Throughput Sequencing (HTS) data and (optionally) trims low quality bases from the 3' end of reads following adapter removal.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.3.3-gcc-11.3.0 |
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adf
ADF Quantum Chemistry Package with GPGPU support (AMS)
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2025.104 |
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| 2024.106 |
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| 2023.104 |
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| 2023.101 |
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| 2022.102 |
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| 2021.103 |
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| 2020.103 |
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| 2019.304 |
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adfrsuite
AutoDockFR (or ADFR in short) is a protein-ligand docking program developed in the Sanner laboratory at Scripps Research under the AutoDock umbrella.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.0 |
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admixtools
.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 7.0.2-gcc-11.2.0 |
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| 5.1-gcc-11.2.0 |
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admixture
ADMIXTURE is a software tool for maximum likelihood estimation of individual ancestries from multilocus SNP genotype datasets. It uses the same statistical model as STRUCTURE but calculates estimates much more rapidly using a fast numerical optimization algorithm.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.3.0 |
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afni
AFNI is a set of C programs for processing, analyzing, and displaying functional MRI (FMRI) data - a technique for mapping human brain activity.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 23.1.01-foss-2021b-python-3.9.6 |
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aimall
AIMAll is an easy to use, accurate, reliable and efficient quantum chemistry software package for performing comprehensive, quantitative and visual QTAIM analyses of molecular systems - starting from molecular wavefunction data.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 19.02.13 |
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aiohttp
Asynchronous HTTP client/server framework for asyncio and Python.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.9.5-gcccore-13.2.0 |
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| 3.8.5-gcccore-12.3.0 |
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alamode
ALAMODE is an open source software designed for analyzing lattice anharmonicity and lattice thermal conductivity of solids. By using an external DFT package such as VASP and Quantum ESPRESSO, you can extract harmonic and anharmonic force constants straightforwardly with ALAMODE. Using the calculated anharmonic force constants, you can also estimate lattice thermal conductivity, phonon linewidth, and other anharmonic phonon properties from first principles.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.5.0-foss-2023a |
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almabte
almaBTE is a software package that solves the space- and time-dependent Boltzmann transport equation for phonons, using only ab-initio calculated quantities as inputs.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.3.2-foss-2021b |
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almosthere
Progress indicator C library. ATHR is a simple yet powerful progress indicator library that works on Windows, Linux, and macOS. It is non-blocking as the progress update is done via a dedicated, lightweight thread, as to not impair the performance of the calling program.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.0.2-gcccore-11.2.0 |
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alphafold
AlphaFold3
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.0.1 |
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| 3.0.0 |
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| 2.3.2 |
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| 2.3.1 |
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| 2.2.2 |
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| 2.2.0 |
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| 2.1.1 |
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| 2.1.0 |
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| 1d43aaf |
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alsa-lib
The Advanced Linux Sound Architecture (ALSA) provides audio and MIDI functionality to the Linux operating system.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.2.8-gcccore-11.2.0 |
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| 1.2.8 |
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amber
Amber (originally Assisted Model Building with Energy Refinement) is software for performing molecular dynamics and structure prediction.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 24.3-foss-2023a-ambertools-24.8-plumed |
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| 24.3-foss-2023a-ambertools-24.8 |
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| 24.3-foss-2023a-ambertools-24.6-cuda-12.1.1 |
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| 24.3-foss-2023a-ambertools-24.6 |
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| 22.5-foss-2021b-ambertools-23.6-cuda-11.4.1 |
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| 22.5-foss-2021b-ambertools-23.5 |
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| 22.1-intel-2021b-ambertools-22.3-updated-cpptraj |
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| 22.1-foss-2021b-ambertools-22.3 |
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| 22.0-intel-2021b-ambertools-22.3-string |
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| 22.0-intel-2021b-ambertools-22.2.lua |
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| 22.0-intel-2021b-ambertools-22.2 |
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| 22.0-foss-2021b-ambertools-22.2-cuda-11.4.1 |
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| 20.12-intel-2021b-ambertools-21.12 |
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| 20.12-fosscuda-2020b-ambertools-21.12 |
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| 18.17-intel-2021b-AmberTools-19.12 |
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| 18.17-fosscuda-2019b-AmberTools-19.12 |
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| 18.3-intel-2021b-ambertools-18.8-string |
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ambertools
AmberTools consists of several independently developed packages that work well by themselves, and with Amber itself. The suite can also be used to carry out complete molecular dynamics simulations, with either explicit water or generalized Born solvent models.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 24.4-foss-2023a |
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ancibd
The software package ancIBD detects Identity-by-Descent (IBD) segments in typical human aDNA data.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.5-foss-2022b-1ff9ca9 |
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angsd
Program for analysing NGS data.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.938-gcc-11.2.0 |
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ansys
Ansys/Fluent
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2024R2 |
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| 2023R2 |
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| 2022R2 |
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| 2022R1 |
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| 2021R2 |
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ansysedt
AnsysEDT
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2023R2 |
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ant
Apache Ant is a Java library and command-line tool whose mission is to drive processes described in build files as targets and extension points dependent upon each other. The main known usage of Ant is the build of Java applications.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.10.12-java-17 |
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| 1.10.11-java-11 |
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| 1.10.9-java-11 |
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| 1.10.7-java-11 |
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antlr
ANTLR, ANother Tool for Language Recognition, (formerly PCCTS) is a language tool that provides a framework for constructing recognizers, compilers, and translators from grammatical descriptions containing Java, C#, C++, or Python actions.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.7.7-gcccore-12.3.0-java-11 |
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apbs
APBS is a software package for modeling biomolecular solvation through solution of the Poisson-Boltzmann equation (PBE), one of the most popular continuum models for describing electrostatic interactions between molecular solutes in salty, aqueous media.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.0.0 |
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aquaduct
Bundle of Python packages for scientific software
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.0.11-intel-2021b |
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aria2
aria2 is a lightweight multi-protocol & multi-source command-line download utility.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.36.0-gcccore-11.3.0 |
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| 1.35.0 |
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armadillo
Armadillo is an open-source C++ linear algebra library (matrix maths) aiming towards a good balance between speed and ease of use. Integer, floating point and complex numbers are supported, as well as a subset of trigonometric and statistics functions.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 12.6.2-foss-2023a |
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| 11.2.3-intel-2021b |
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| 11.2.3-foss-2021b |
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arpack-ng
ARPACK is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.9.0-foss-2023a |
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| 3.8.0-intel-2021b |
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| 3.8.0-foss-2021b |
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| 3.7.0-intel-2020a |
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ase
ASE is a python package providing an open source Atomic Simulation Environment in the Python scripting language. From version 3.20.1 we also include the ase-ext package, it contains optional reimplementations in C of functions in ASE. ASE uses it automatically when installed.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.25.0-intel-2021b |
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| 3.23.0b1-intel-2021b |
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| 3.23.0b1-foss-2022a |
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| 3.23.0-intel-2021b |
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| 3.22.1-intel-2021b |
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| 3.22.1-foss-2022a |
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| 3.22.0-intel-2021b |
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| 3.22.0-foss-2021a |
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aster
No description available
| Versions | Environment loading command (via Lmod) |
|---|---|
| 12.7.0 |
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asyncssh
AsyncSSH is a Python package which provides an asynchronous client and server implementation of the SSHv2 protocol on top of the Python 3.6+ asyncio framework.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.14.2-gcccore-13.2.0 |
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| 2.14.2-gcccore-12.3.0 |
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at-spi2-atk
AT-SPI 2 toolkit bridge
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.38.0-gcccore-12.3.0 |
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| 2.38.0-gcccore-11.2.0 |
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| 2.38.0-gcccore-10.3.0 |
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| 2.38.0-gcccore-10.2.0 |
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| 2.38.0 |
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at-spi2-core
Assistive Technology Service Provider Interface.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.49.91-gcccore-12.3.0 |
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| 2.40.3-gcccore-11.2.0 |
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| 2.40.3 |
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| 2.40.2-gcccore-10.3.0 |
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| 2.38.0-gcccore-10.2.0 |
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atk
ATK provides the set of accessibility interfaces that are implemented by other toolkits and applications. Using the ATK interfaces, accessibility tools have full access to view and control running applications.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.38.0-gcccore-12.3.0 |
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| 2.36.0-gcccore-11.2.0 |
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| 2.36.0-gcccore-10.3.0 |
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| 2.36.0-gcccore-10.2.0 |
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| 2.36.0 |
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atomsk
Automake: GNU Standards-compliant Makefile generator
| Versions | Environment loading command (via Lmod) |
|---|---|
| b0.11.2-foss-2021b |
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attr
Commands for Manipulating Filesystem Extended Attributes
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.5.1-gcccore-11.2.0 |
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attrdict3
AttrDict is a Python library that provides mapping objects that allow their elements to be accessed both as keys and as attributes.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.0.2-gcccore-11.2.0 |
|
augustus
AUGUSTUS is a program that predicts genes in eukaryotic genomic sequences
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.4.0-foss-2021b |
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| 3.4.0-foss-2020b |
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autoconf
Autoconf is an extensible package of M4 macros that produce shell scripts to automatically configure software source code packages. These scripts can adapt the packages to many kinds of UNIX-like systems without manual user intervention. Autoconf creates a configuration script for a package from a template file that lists the operating system features that the package can use, in the form of M4 macro calls.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.72-gcccore-14.3.0 |
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| 2.72-gcccore-13.3.0 |
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| 2.71-gcccore-13.2.0 |
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| 2.71-gcccore-12.3.0 |
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| 2.71-gcccore-12.2.0 |
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| 2.71-gcccore-11.3.0 |
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| 2.71-gcccore-11.2.0 |
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| 2.71-gcccore-10.3.0 |
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| 2.71 |
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| 2.69-gcccore-10.3.0 |
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| 2.69-gcccore-10.2.0 |
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| 2.69-gcccore-9.3.0 |
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| 2.69-gcccore-8.3.0 |
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| 2.69-gcccore-8.2.0 |
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| 2.69-gcccore-7.3.0 |
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| 2.69 |
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autodock
AutoDock is a suite of automated docking tools. It is designed to predict how small molecules, such as substrates or drug candidates, bind to a receptor of known 3D structure.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.2.6-gcc-10.3.0 |
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| 3.05-gcc-11.3.0 |
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autodock-gpu
OpenCL and Cuda accelerated version of AutoDock. It leverages its embarrasingly parallelizable LGA by processing ligand-receptor poses in parallel over multiple compute units. AutoDock is a suite of automated docking tools. It is designed to predict how small molecules, such as substrates or drug candidates, bind to a receptor of known 3D structure.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.5.3-gcc-11.3.0-cuda-11.7.0 |
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autodock-vina
AutoDock Vina is an open-source program for doing molecular docking.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.2.3-foss-2021a |
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automake
Automake: GNU Standards-compliant Makefile generator
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.18-gcccore-14.3.0 |
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| 1.16.5-gcccore-13.3.0 |
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| 1.16.5-gcccore-13.2.0 |
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| 1.16.5-gcccore-12.3.0 |
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| 1.16.5-gcccore-12.2.0 |
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| 1.16.5-gcccore-11.3.0 |
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| 1.16.5 |
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| 1.16.4-gcccore-11.2.0 |
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| 1.16.4 |
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| 1.16.3-gcccore-10.3.0 |
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| 1.16.2-gcccore-10.2.0 |
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| 1.16.1-gcccore-9.3.0 |
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| 1.16.1-gcccore-8.3.0 |
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| 1.16.1-gcccore-8.2.0 |
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| 1.16.1-gcccore-7.3.0 |
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| 1.15 |
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| 1.14-gcccore-11.2.0 |
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autosolvate
Automated workflow for setting up explicit solvent quantum chemistry calculations for molecules.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.1.4-foss-2021b-python-3.9.6 |
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autotools
This bundle collect the standard GNU build tools: Autoconf, Automake and libtool
| Versions | Environment loading command (via Lmod) |
|---|---|
| 20250527-gcccore-14.3.0 |
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| 20231222-gcccore-13.3.0 |
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| 20220317-gcccore-13.2.0 |
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| 20220317-gcccore-12.3.0 |
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| 20220317-gcccore-12.2.0 |
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| 20220317-gcccore-11.3.0 |
|
| 20220317 |
|
| 20210726-gcccore-11.2.0 |
|
| 20210726 |
|
| 20210128-gcccore-10.3.0 |
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| 20200321-gcccore-10.2.0 |
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| 20180311-gcccore-9.3.0 |
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| 20180311-gcccore-8.3.0 |
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| 20180311-gcccore-8.2.0 |
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| 20180311-gcccore-7.3.0 |
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| 20150215 |
|
avogadro2
Avogadro is an advanced molecule editor and visualizer designed for cross-platform use in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.97.0-linux-x86_64 |
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aws-sdk-cpp
The AWS SDK for C++ provides a modern C++ (version C++ 11 or later) interface for Amazon Web Services (AWS).
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.11.137-gcc-11.3.0 |
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bader
A fast algorithm for doing Bader's analysis on a charge density grid.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.04-intel-compilers-2021.4.0 |
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| 1.04-iccifort-2020.4.304 |
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bagel
BAGEL (Brilliantly Advanced General Electronic-structure Library) is a parallel electronic-structure program.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.2.2-gomkl-2021b |
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bagua
ASE is a python package providing an open source Atomic Simulation Environment in the Python scripting language. From version 3.20.1 we also include the ase-ext package, it contains optional reimplementations in C of functions in ASE. ASE uses it automatically when installed.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.9.0-foss-2021a-cuda-11.3.1 |
|
bamtools
BamTools provides both a programmer's API and an end-user's toolkit for handling BAM files.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.5.2-gcc-11.2.0 |
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| 2.5.1-iccifort-2020.4.304 |
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| 2.5.1-gcc-10.2.0 |
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| 2.5.1-gcc-9.3.0 |
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bandage
Bandage is a program for visualising de novo assembly graphs
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.9.0-gcccore-11.2.0 |
|
bazel
Bazel is a build tool that builds code quickly and reliably. It is used to build the majority of Google's software.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 6.1.0-gcccore-12.3.0 |
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| 5.3.0-gcccore-11.2.0 |
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| 5.1.1-gcccore-11.3.0 |
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| 5.1.1-gcccore-11.2.0 |
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| 3.7.2-gcccore-11.2.0 |
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| 3.7.2-gcccore-10.3.0 |
|
| 3.7.2-gcccore-10.2.0 |
|
bbftp
bbFTP is a file transfer software. It implements its own transfer protocol, which is optimized for large files (larger than 2GB) and secure as it does not read the password in a file and encrypts the connection information. bbFTP main features are: * Encoded username and password at connection * SSH and Certificate authentication modules * Multi-stream transfer * Big windows as defined in RFC1323 * On-the-fly data compression * Automatic retry * Customizable time-outs * Transfer simulation * AFS authentication integration * RFIO interface
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.2.1-gcccore-11.2.0 |
|
bbmap
BBMap short read aligner, and other bioinformatic tools.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 39.01-gcc-11.3.0 |
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bcftools
Samtools is a suite of programs for interacting with high-throughput sequencing data. BCFtools - Reading/writing BCF2/VCF/gVCF files and calling/filtering/summarising SNP and short indel sequence variants
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.14-gcc-11.2.0 |
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| 1.12-gcc-10.2.0 |
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| 1.12-gcc-9.3.0 |
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| 1.11-gcc-10.2.0 |
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bcl2fastq2
bcl2fastq Conversion Software both demultiplexes data and converts BCL files generated by Illumina sequencing systems to standard FASTQ file formats for downstream analysis.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.20.0-gcc-11.2.0 |
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bcrypt
Acceptable password hashing for your software and your servers (but you should really use argon2id or scrypt)
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.1.3-gcccore-13.2.0 |
|
beagle-lib
beagle-lib is a high-performance library that can perform the core calculations at the heart of most Bayesian and Maximum Likelihood phylogenetics packages.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.0.0-intel-compilers-2021.4.0 |
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beautifulsoup
Beautiful Soup is a Python library designed for quick turnaround projects like screen-scraping.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.14.2-gcccore-14.3.0 |
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| 4.12.2-gcccore-13.2.0 |
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| 4.12.2-gcccore-12.3.0 |
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| 4.10.0-gcccore-11.3.0 |
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bedtools
BEDTools: a powerful toolset for genome arithmetic. The BEDTools utilities allow one to address common genomics tasks such as finding feature overlaps and computing coverage. The utilities are largely based on four widely-used file formats: BED, GFF/GTF, VCF, and SAM/BAM.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.30.0-iccifort-2020.4.304 |
|
beef
BEEF is a library-based implementation of the Bayesian Error Estimation Functional, suitable for linking against by Fortran- or C-based DFT codes. A description of BEEF can be found at http://dx.doi.org/10.1103/PhysRevB.85.235149.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.1.3-intel-compilers-2023.2.1 |
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| 0.1.3-intel-2023b |
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| 0.1.1-intel-compilers-2021.4.0 |
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| 0.1.1-iccifort-2020.4.304 |
|
bgen
A BGEN file format reader. It fully supports the BGEN format specifications 1.2 and 1.3.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.1.3-gcccore-11.2.0 |
|
binutils
binutils: GNU binary utilities
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.44-gcccore-14.3.0 |
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| 2.44 |
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| 2.42-gcccore-13.3.0 |
|
| 2.42-gcccore-13.2.0 |
|
| 2.42 |
|
| 2.40-gcccore-13.2.0 |
|
| 2.40-gcccore-13.1.0 |
|
| 2.40-gcccore-12.3.0 |
|
| 2.40 |
|
| 2.39-gcccore-12.2.0 |
|
| 2.39 |
|
| 2.38-gcccore-11.3.0 |
|
| 2.38 |
|
| 2.37-gcccore-11.2.0 |
|
| 2.37 |
|
| 2.36.1-gcccore-10.3.0 |
|
| 2.36.1 |
|
| 2.35-gcccore-10.2.0 |
|
| 2.35 |
|
| 2.34-gcccore-9.3.0 |
|
| 2.34 |
|
| 2.32-gcccore-8.3.0 |
|
| 2.32 |
|
| 2.31.1-gcccore-8.2.0 |
|
| 2.31.1 |
|
| 2.30-gcccore-7.3.0 |
|
| 2.30 |
|
| 2.28 |
|
| 2.25 |
|
bio-searchio-hmmer
Code to parse output from hmmsearch, hmmscan, phmmer and nhmmer, compatible with both version 2 and version 3 of the HMMER package from http://hmmer.org.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.7.3-gcc-10.3.0 |
|
biobb
Pysam is a python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.9.0-foss-2021b |
|
bioperl
Bioperl is the product of a community effort to produce Perl code which is useful in biology. Examples include Sequence objects, Alignment objects and database searching objects.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.7.8-gcccore-10.3.0 |
|
| 1.7.8-gcccore-10.2.0 |
|
biopython
Biopython is a set of freely available tools for biological computation written in Python by an international team of developers. It is a distributed collaborative effort to develop Python libraries and applications which address the needs of current and future work in bioinformatics.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.81-foss-2022b |
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| 1.79-intel-2021b |
|
| 1.79-foss-2021b |
|
| 1.78-intel-2020b |
|
| 1.78-foss-2020b |
|
bison
Bison is a general-purpose parser generator that converts an annotated context-free grammar into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.8.2-gcccore-14.3.0 |
|
| 3.8.2-gcccore-13.3.0 |
|
| 3.8.2-gcccore-13.2.0 |
|
| 3.8.2-gcccore-13.1.0 |
|
| 3.8.2-gcccore-12.3.0 |
|
| 3.8.2-gcccore-12.2.0 |
|
| 3.8.2-gcccore-11.3.0 |
|
| 3.8.2 |
|
| 3.7.6-gcccore-11.2.0 |
|
| 3.7.6-gcccore-10.3.0 |
|
| 3.7.6 |
|
| 3.7.1-gcccore-10.2.0 |
|
| 3.7.1 |
|
| 3.5.3-gcccore-9.3.0 |
|
| 3.5.3 |
|
| 3.3.2-gcccore-8.3.0 |
|
| 3.3.2 |
|
| 3.0.5-gcccore-11.2.0 |
|
| 3.0.5-gcccore-8.2.0 |
|
| 3.0.5-gcccore-7.3.0 |
|
| 3.0.5 |
|
| 3.0.4-gcccore-7.3.0 |
|
| 3.0.4 |
|
blast+
Basic Local Alignment Search Tool, or BLAST, is an algorithm for comparing primary biological sequence information, such as the amino-acid sequences of different proteins or the nucleotides of DNA sequences.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.12.0-gompi-2021b |
|
| 2.11.0-gompi-2021a |
|
| 2.11.0-gompi-2020b |
|
| 2.2.31 |
|
blat
BLAT on DNA is designed to quickly find sequences of 95% and greater similarity of length 25 bases or more.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.7-gcc-11.2.0 |
|
blender
Blender is the free and open source 3D creation suite. It supports the entirety of the 3D pipeline-modeling, rigging, animation, simulation, rendering, compositing and motion tracking, even video editing and game creation.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.2.2-linux-x86_64-cuda-12.1.1 |
|
| 3.5.0-linux-x86_64-cuda-11.7.0 |
|
| 3.3.2-linux-x86_64-cuda-11.7.0 |
|
| 3.1.2-linux-x64 |
|
blis
AMD's fork of BLIS. BLIS is a portable software framework for instantiating high-performance BLAS-like dense linear algebra libraries.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.2-gcccore-10.2.0-amd |
|
| 1.0-gcc-13.3.0 |
|
| 0.9.0-gcc-13.2.0 |
|
| 0.9.0-gcc-12.3.0 |
|
| 0.9.0-gcc-12.2.0 |
|
| 0.9.0-gcc-11.3.0 |
|
| 0.8.0-gcccore-10.2.0 |
|
blitz++
Blitz++ is a (LGPLv3+) licensed meta-template library for array manipulation in C++ with a speed comparable to Fortran implementations, while preserving an object-oriented interface
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.0.2-gcccore-11.2.0 |
|
| 1.0.2-gcccore-9.3.0 |
|
bokeh
Statistical and novel interactive HTML plots for Python
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.4.1-gfbf-2023b |
|
| 3.2.2-foss-2023a |
|
boltztrap2
BoltzTraP2 is a modern implementation of the smoothed Fourier interpolation algorithm for electronic bands that formed the base of the original and widely used BoltzTraP code.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 22.6.1 |
|
boost
Boost provides free peer-reviewed portable C++ source libraries.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.85.0-gcc-12.3.0 |
|
| 1.83.0-gcc-13.2.0 |
|
| 1.82.0-gcc-12.3.0 |
|
| 1.81.0-gcc-12.2.0 |
|
| 1.79.0-gcc-12.3.0 |
|
| 1.79.0-gcc-11.3.0 |
|
| 1.79.0-gcc-11.2.0 |
|
| 1.77.0-intel-compilers-2021.4.0 |
|
| 1.77.0-gcc-11.2.0 |
|
| 1.76.0-intel-compilers-2021.2.0 |
|
| 1.76.0-gcc-10.3.0 |
|
| 1.75.0-gcc-11.2.0 |
|
| 1.74.0-iomkl-2021a |
|
| 1.74.0-intel-2021a |
|
| 1.74.0-iccifort-2020.4.304 |
|
| 1.74.0-gcc-10.3.0 |
|
| 1.74.0-gcc-10.2.0 |
|
| 1.72.0-iimpi-2020a |
|
| 1.71.0-gompi-2019b |
|
| 1.70.0-gompi-2021b |
|
| 1.70.0-gompi-2019a |
|
| 1.66.0-intel-2021b |
|
| 1.66.0-foss-2021b |
|
| 1.64.0-gcc-10.3.0 |
|
| 1.44.0-gcc-11.2.0 |
|
boost.python
Boost.Python is a C++ library which enables seamless interoperability between C++ and the Python programming language.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.79.0-gcc-11.3.0 |
|
| 1.77.0-gcc-11.2.0-python-2.7.18 |
|
| 1.77.0-gcc-11.2.0 |
|
| 1.76.0-gcc-10.3.0 |
|
| 1.71.0-gompi-2019b |
|
bowtie
Bowtie is an ultrafast, memory-efficient short read aligner. It aligns short DNA sequences (reads) to the human genome.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.3.1-gcc-11.2.0 |
|
| 1.3.0-gcc-10.3.0 |
|
| 1.3.0-gcc-10.2.0 |
|
bowtie2
Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s of characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes. Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, its memory footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.4.4-gcc-11.2.0 |
|
| 2.4.4-gcc-10.3.0 |
|
brats
BRATS is a software package which provides a variety of tools for the spectral analysis of both new broad-bandwidth radio data, along with legacy support for narrowband telescopes.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.6.3-gcc-11.2.0 |
|
brotli
Brotli is a generic-purpose lossless compression algorithm that compresses data using a combination of a modern variant of the LZ77 algorithm, Huffman coding and 2nd order context modeling, with a compression ratio comparable to the best currently available general-purpose compression methods. It is similar in speed with deflate but offers more dense compression. The specification of the Brotli Compressed Data Format is defined in RFC 7932.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.1.0-gcccore-13.2.0 |
|
| 1.0.9-gcccore-12.3.0 |
|
| 1.0.9-gcccore-12.2.0 |
|
| 1.0.9-gcccore-11.3.0 |
|
| 1.0.9-gcccore-11.2.0 |
|
| 1.0.9 |
|
brunsli
Brunsli is a lossless JPEG repacking library.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.1-gcccore-12.3.0 |
|
btllib
Bioinformatics Technology Lab common code library in C++ with Python wrappers.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.6.2-gcc-11.3.0 |
|
bufrlib
NCEP BUFRLIB software to encode or decode BUFR messages. It is not intended to be a primer on the BUFR code form itself.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 11.3.0.2-gcc-11.2.0 |
|
busco
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
| Versions | Environment loading command (via Lmod) |
|---|---|
| 5.7.0 |
|
| 5.1.2-foss-2021b |
|
bwa
Burrows-Wheeler Aligner (BWA) is an efficient program that aligns relatively short nucleotide sequences against a long reference sequence such as the human genome.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.7.17-iccifort-2020.4.304 |
|
bzip2
bzip2 is a freely available, patent free, high-quality data compressor. It typically compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical compressors), whilst being around twice as fast at compression and six times faster at decompression.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.0.8-lustre |
|
| 1.0.8-gcccore-14.3.0 |
|
| 1.0.8-gcccore-13.3.0 |
|
| 1.0.8-gcccore-13.2.0 |
|
| 1.0.8-gcccore-12.3.0 |
|
| 1.0.8-gcccore-12.2.0 |
|
| 1.0.8-gcccore-11.3.0 |
|
| 1.0.8-gcccore-11.2.0 |
|
| 1.0.8-gcccore-10.3.0 |
|
| 1.0.8-gcccore-10.2.0 |
|
| 1.0.8-gcccore-9.3.0 |
|
| 1.0.8-gcccore-8.3.0 |
|
| 1.0.8 |
|
| 1.0.6-gcccore-11.2.0 |
|
| 1.0.6-gcccore-9.3.0 |
|
| 1.0.6-gcccore-8.2.0 |
|
c-ares
c-ares is a C library for asynchronous DNS requests (including name resolves)
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.18.1-gcccore-11.3.0 |
|
| 1.18.1-gcccore-11.2.0 |
|
cabs-flex
CABS-flex is a protein simulation tool that implements the CABS simulation engine (which is the coarse-grained protein model) for fast simulations of proteins flexibility.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.9.14 |
|
cairo
Cairo is a 2D graphics library with support for multiple output devices. Currently supported output targets include the X Window System (via both Xlib and XCB), Quartz, Win32, image buffers, PostScript, PDF, and SVG file output. Experimental backends include OpenGL, BeOS, OS/2, and DirectFB
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.17.8-gcccore-12.3.0 |
|
| 1.17.4-gcccore-11.3.0 |
|
| 1.16.0-gcccore-11.2.0 |
|
| 1.16.0-gcccore-10.3.0 |
|
| 1.16.0-gcccore-10.2.0 |
|
| 1.16.0 |
|
calculix
A Free Software Three-Dimensional Structural Finite Element Program
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.20-gcccore-11.2.0-precice-2.5.0 |
|
| 2.20-gcccore-11.2.0 |
|
| 2.19-gcccore-11.2.0 |
|
canu
Canu is a fork of the Celera Assembler designed for high-noise single-molecule sequencing
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.2-gcccore-11.2.0 |
|
castep
CASTEP is an electronic structure materials modelling code based on density functional theory (DFT), with functionality including geometry optimization molecular dynamics, phonons, NMR chemical shifts and much more.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 24.1-intel-2021b |
|
| 22.11-intel-2021b |
|
| 19.11-intel-2021a |
|
catch2
A modern, C++-native, header-only, test framework for unit-tests, TDD and BDD - using C++11, C++14, C++17 and later
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.13.9-gcccore-13.2.0 |
|
| 2.13.9-gcccore-12.3.0 |
|
caver
Software tool for protein analysis
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.0.2 |
|
ccache
Ccache (or “ccache”) is a compiler cache. It speeds up recompilation by caching previous compilations and detecting when the same compilation is being done again
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.6.1-gcccore-11.2.0 |
|
ccl
Clozure CL (often called CCL for short) is a free Common Lisp implementation with a long history. Some distinguishing features of the implementation include fast compilation speed, native threads, a precise, generational, compacting garbage collector, and a convenient foreign-function interface.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.13 |
|
cclib
cclib is a Python library that provides parsers for computational chemistry log files. It also provides a platform to implement algorithms in a package-independent manner.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.7.2-foss-2021b |
|
cd-hit
CD-HIT is a very widely used program for clustering and comparing protein or nucleotide sequences.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.8.1-gcc-12.3.0 |
|
cellprofiler
CellProfiler is a free open-source software designed to enable biologists without training in computer vision or programming to quantitatively measure phenotypes from thousands of images automatically.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.1.9 |
|
| 3.0.0-foss-2021b-python-2.7.18 |
|
cernlib
The CERN Program Library is a large collection of general purpose libraries and modules maintained and offered in both source and object code form on the CERN central computers.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2006.35 |
|
cffi
C Foreign Function Interface for Python. Interact with almost any C code from Python, based on C-like declarations that you can often copy-paste from header files or documentation.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.17.1-gcccore-14.3.0 |
|
| 1.16.0-gcccore-13.3.0 |
|
| 1.15.1-gcccore-13.2.0 |
|
| 1.15.1-gcccore-12.3.0 |
|
cfitsio
CFITSIO is a library of C and Fortran subroutines for reading and writing data files in FITS (Flexible Image Transport System) data format.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.3.0-gcccore-12.3.0 |
|
| 3.49-gcccore-11.2.0 |
|
cfour
CFOUR (Coupled-Cluster techniques for Computational Chemistry) is a program package for performing high-level quantum chemical calculations on atoms and molecules.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.1-intel-compilers-2021.4.0-omp |
|
cgal
The goal of the CGAL Open Source Project is to provide easy access to efficient and reliable geometric algorithms in the form of a C++ library.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 5.6-gcccore-12.3.0 |
|
| 4.14.3-iimpi-2021a |
|
| 4.14.3-gompi-2022a |
|
| 4.14.3-gompi-2021b |
|
| 4.14.3-gompi-2021a |
|
charmm
CHARMM (Chemistry at HARvard Macromolecular Mechanics) is a versatile and widely used molecular simulation program with broad application to many-particle systems.
| Versions | Environment loading command (via Lmod) |
|---|---|
| c48b1-intel-2022a |
|
check
Check is a unit testing framework for C. It features a simple interface for defining unit tests, putting little in the way of the developer. Tests are run in a separate address space, so both assertion failures and code errors that cause segmentation faults or other signals can be caught. Test results are reportable in the following: Subunit, TAP, XML, and a generic logging format.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.15.2-gcccore-11.2.0 |
|
| 0.15.2-gcccore-10.2.0 |
|
chemps2
CheMPS2 is a scientific library which contains a spin-adapted implementation of the density matrix renormalization group (DMRG) for ab initio quantum chemistry.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.8.12-foss-2023a |
|
| 1.8.11-intel-2021b |
|
| 1.8.11-foss-2021b |
|
| 1.8.9-intel-2020b |
|
chroma
Chroma software
| Versions | Environment loading command (via Lmod) |
|---|---|
| 9e78369-gfbf-2022a-cuda-11.7.0 |
|
| 9e78369-foss-2022a-cuda-11.7.0 |
|
cistem
cisTEM is user-friendly software to process cryo-EM images of macromolecular complexes and obtain high-resolution 3D reconstructions from them.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.0.0-beta-gcccore-10.3.0 |
|
cite-seq-count
A python package that allows to count antibody TAGS from a CITE-seq and/or cell hashing experiment.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.4.4-foss-2021b-python-3.9.6 |
|
clang
C, C++, Objective-C compiler, based on LLVM. Does not include C++ standard library -- use libstdc++ from GCC.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 18.1.8-gcccore-13.3.0 |
|
| 16.0.6-gcccore-12.3.0 |
|
| 15.0.5-gcccore-11.3.0-cuda-11.7.0 |
|
| 13.0.1-gcccore-11.3.0-cuda-11.7.0 |
|
| 13.0.1-gcccore-11.2.0-cuda-11.4.1 |
|
| 12.0.1-gcccore-11.2.0 |
|
| 11.0.1-gcccore-10.2.0 |
|
clanggcc
GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 12.0.1 |
|
clhep
The CLHEP project is intended to be a set of HEP-specific foundation and utility classes such as random generators, physics vectors, geometry and linear algebra. CLHEP is structured in a set of packages independent of any external package.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.4.6.2-gcc-11.3.0 |
|
| 2.4.5.1-gcc-11.2.0 |
|
| 2.4.4.0-gcc-10.2.0 |
|
clisp
CLISP is a Common Lisp implementation, a high-level, general-purpose, object-oriented, dynamic, functional programming language.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.49 |
|
cloudcompare
3D point cloud and mesh processing software
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.13.2-foss-2021b |
|
| 2.12.4-foss-2021b |
|
cmake
CMake, the cross-platform, open-source build system. CMake is a family of tools designed to build, test and package software.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.0.3-gcccore-14.3.0 |
|
| 3.31.8 |
|
| 3.29.3-gcccore-13.3.0 |
|
| 3.29.3-gcccore-13.2.0 |
|
| 3.27.6-gcccore-13.2.0 |
|
| 3.26.3-gcccore-12.3.0 |
|
| 3.24.3-gcccore-12.2.0 |
|
| 3.24.3-gcccore-11.3.0 |
|
| 3.24.3 |
|
| 3.23.1-gcccore-11.3.0 |
|
| 3.22.1-gcccore-11.2.0 |
|
| 3.21.1-gcccore-11.2.0 |
|
| 3.21.1 |
|
| 3.20.1-gcccore-10.3.0 |
|
| 3.18.4-gcccore-10.2.0 |
|
| 3.16.4-intel-2020a |
|
| 3.16.4-gcccore-9.3.0 |
|
| 3.15.3-gcccore-8.3.0 |
|
| 3.9.1-gcccore-9.3.0 |
|
cobramm
COBRAMM is a computational chemistry program package interfacing widely known commercial & academic softwares for molecular modeling (spanning from electronic structure to molecular mechanics computations).
| Versions | Environment loading command (via Lmod) |
|---|---|
| 5.7devel6 |
|
complexespp
Monte-Carlo engine to run simulations
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4183ef6-foss-2021b |
|
concurrentversionssystem
CVS is a version control system, an important component of Source Configuration Management (SCM).
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.11.23 |
|
configurable-http-proxy
HTTP proxy for node.js including a REST API for updating the routing table. Developed as a part of the Jupyter Hub multi-user server.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.6.1-gcccore-13.2.0 |
|
| 4.5.6-gcccore-12.3.0 |
|
coordgenlibs
Schrodinger-developed 2D Coordinate Generation
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.0.1-iimpi-2021b |
|
| 3.0.1-gompi-2021b |
|
| 3.0.1-gompi-2021a |
|
cosma
COSMA is a parallel, high-performance, GPU-accelerated, matrix-matrix multiplication algorithm that is communication-optimal for all combinations of matrix dimensions, number of processors and memory sizes, without the need for any parameter tuning.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.6.1-foss-2021b-cuda-11.4.1-nccl-2.10.3 |
|
| 2.6.1-foss-2021b-cuda-11.4.1 |
|
cp2k
CP2K is a freely available (GPL) program, written in Fortran 95, to perform atomistic and molecular simulations of solid state, liquid, molecular and biological systems. It provides a general framework for different methods such as e.g. density functional theory (DFT) using a mixed Gaussian and plane waves approach (GPW), and classical pair and many-body potentials.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2024.3-foss-2021b-fixed-plumed |
|
| 2024.3-foss-2021b |
|
| 2024.1-foss-2021b |
|
| 2023.1-foss-2021b |
|
| 9.1-intel-2021a-noplumed |
|
| 9.1-intel-2021a |
|
| 9.1-foss-2021b-noplumed |
|
| 9.1-foss-2021b-cuda-11.4.1-noplumed |
|
| 9.1-foss-2021b-cosma-2.6.1-cuda-11.4.1-noplumed |
|
| 9.1-foss-2021b-cosma-2.6.1-cuda-11.4.1-nccl-noplumed |
|
| 9.1-foss-2021b |
|
| 9.1-foss-2021a-noplumed |
|
| 8.2-intel-2020b |
|
| 6.1-intel-2020a |
|
cpint
CPINT is an open-source integral library for the calculation of Gaussian integrals in computational chemistry.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 274b3199-gcccore-12.3.0 |
|
cpmd
CPMD code is a parallelized plane wave / pseudopotential implementation of Density Functional Theory, particularly designed for ab-initio molecular dynamics.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.3-intel-2021b |
|
cppunit
CppUnit is the C++ port of the famous JUnit framework for unit testing.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.15.1-gcccore-12.3.0 |
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| 1.15.1-gcccore-11.3.0 |
|
| 1.15.1-gcccore-11.2.0 |
|
cppy
A small C++ header library which makes it easier to write Python extension modules. The primary feature is a PyObject smart pointer which automatically handles reference counting and provides convenience methods for performing common object operations.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.2.1-gcccore-13.2.0 |
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| 1.2.1-gcccore-12.3.0 |
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| 1.2.1-gcccore-12.2.0 |
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| 1.2.1-gcccore-11.3.0 |
|
| 1.1.0-gcccore-11.2.0 |
|
| 1.1.0-gcccore-10.3.0 |
|
crest
CREST is an utility/driver program for the xtb program. Originally it was designed as conformer sampling program, hence the abbreviation Conformer–Rotamer Ensemble Sampling Tool, but now offers also some utility functions for calculations with the GFNn–xTB methods. Generally the program functions as an IO based OMP scheduler (i.e., calculations are performed by the xtb program) and tool for the creation and analysation of structure ensembles.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.0.1-intel-2023a |
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| 3.0-intel-2021a-8505366-dev |
|
| 2.12-intel-2021a-no-stderr-to-dev-null |
|
| 2.12-intel-2021a-02da018 |
|
| 2.12-intel-2021a |
|
| 2.12 |
|
| 2.11-intel-2021a |
|
crpropa
CRPropa is a publicly available code to study the propagation of ultra high energy nuclei up to iron on their voyage through an extra galactic environment.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.2.1-foss-2021b-python-3.9.6 |
|
cryosparc
CryoSPARC is a state of the art scientific software platform for cryo-electron microscopy (cryo-EM) used in research and drug discovery pipelines.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.1.2 |
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| 4.1.1-230110 |
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| 4.0.2 |
|
| 4.0.1-221017 |
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| 3.4.0 |
|
| 3.3.2-220824 |
|
cryptography
cryptography is a package designed to expose cryptographic primitives and recipes to Python developers.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 45.0.5-gcccore-14.3.0 |
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| 41.0.5-gcccore-13.3.0 |
|
| 41.0.5-gcccore-13.2.0 |
|
| 41.0.1-gcccore-12.3.0 |
|
crystal17
CRYSTAL is a general-purpose program for the study of crystalline solids, and the first which has been distributed publicly.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.0.2-iompi-2021b |
|
| 1.0.2-iompi-2021a |
|
crystal23
CRYSTAL is a general-purpose program for the study of crystalline solids, and the first which has been distributed publicly.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.0.1-iomkl-2021b |
|
ctffind
Program for finding CTFs of electron micrographs.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.1.14-foss-2021b |
|
cubelib
Cube, which is used as performance report explorer for Scalasca and Score-P, is a generic tool for displaying a multi-dimensional performance space consisting of the dimensions (i) performance metric, (ii) call path, and (iii) system resource. Each dimension can be represented as a tree, where non-leaf nodes of the tree can be collapsed or expanded to achieve the desired level of granularity. This module provides the Cube general purpose C++ library component and command-line tools.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.8-gcccore-11.2.0 |
|
cubewriter
Cube, which is used as performance report explorer for Scalasca and Score-P, is a generic tool for displaying a multi-dimensional performance space consisting of the dimensions (i) performance metric, (ii) call path, and (iii) system resource. Each dimension can be represented as a tree, where non-leaf nodes of the tree can be collapsed or expanded to achieve the desired level of granularity. This module provides the Cube high-performance C writer library component.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.8-gcccore-11.2.0 |
|
cuda
CUDA (formerly Compute Unified Device Architecture) is a parallel computing platform and programming model created by NVIDIA and implemented by the graphics processing units (GPUs) that they produce. CUDA gives developers access to the virtual instruction set and memory of the parallel computational elements in CUDA GPUs.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 12.4.0 |
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| 12.2.0 |
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| 12.1.1 |
|
| 11.8.0 |
|
| 11.7.0 |
|
| 11.6.0 |
|
| 11.4.1 |
|
| 11.3.1 |
|
| 11.1.1-iccifort-2020.4.304 |
|
| 11.1.1-gcc-10.2.0 |
|
| 11.0.2-iccifort-2020.1.217 |
|
| 11.0.2-gcc-9.3.0 |
|
| 10.1.243-iccifort-2019.5.281 |
|
| 10.1.243 |
|
| 10.0.130 |
|
| 8.0.61 |
|
cudacore
CUDA (formerly Compute Unified Device Architecture) is a parallel computing platform and programming model created by NVIDIA and implemented by the graphics processing units (GPUs) that they produce. CUDA gives developers access to the virtual instruction set and memory of the parallel computational elements in CUDA GPUs.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 11.2.2 |
|
| 11.2.1 |
|
| 11.1.1 |
|
| 11.0.2 |
|
cudnn
The NVIDIA CUDA Deep Neural Network library (cuDNN) is a GPU-accelerated library of primitives for deep neural networks.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 8.9.2.26-cuda-12.1.1 |
|
| 8.6.0.163-cuda-11.8.0 |
|
| 8.4.1.50-cuda-11.7.0 |
|
| 8.4.1.50-cuda-11.6.0 |
|
| 8.2.2.26-cuda-11.4.1 |
|
| 8.2.1.32-cuda-11.3.1 |
|
| 8.1.0.77-cuda-11.2.1 |
|
| 8.1.0.77-cuda-11.1.1 |
|
| 8.0.4.30-cuda-11.1.1 |
|
| 7.6.5.32-cuda-10.1.243 |
|
| 7.6.4.38-cuda-10.0.130 |
|
| 7.4.2.24-cuda-10.0.130 |
|
cunit
Automated testing framework for C.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.1-3-gcccore-11.2.0 |
|
curl
libcurl is a free and easy-to-use client-side URL transfer library, supporting DICT, FILE, FTP, FTPS, Gopher, HTTP, HTTPS, IMAP, IMAPS, LDAP, LDAPS, POP3, POP3S, RTMP, RTSP, SCP, SFTP, SMTP, SMTPS, Telnet and TFTP. libcurl supports SSL certificates, HTTP POST, HTTP PUT, FTP uploading, HTTP form based upload, proxies, cookies, user+password authentication (Basic, Digest, NTLM, Negotiate, Kerberos), file transfer resume, http proxy tunneling and more.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 8.14.1-gcccore-14.3.0 |
|
| 8.7.1-gcccore-13.3.0 |
|
| 8.7.1-gcccore-13.2.0 |
|
| 8.3.0-gcccore-13.2.0 |
|
| 8.0.1-gcccore-12.3.0 |
|
| 7.86.0-gcccore-12.2.0 |
|
| 7.86.0 |
|
| 7.83.0-gcccore-11.3.0 |
|
| 7.78.0-gcccore-11.2.0 |
|
| 7.78.0 |
|
| 7.76.0-gcccore-10.3.0 |
|
| 7.72.0-gcccore-11.2.0 |
|
| 7.72.0-gcccore-10.2.0 |
|
| 7.69.1-gcccore-9.3.0 |
|
| 7.66.0-gcccore-8.3.0 |
|
cutadapt
Cutadapt finds and removes adapter sequences, primers, poly-A tails and other types of unwanted sequence from your high-throughput sequencing reads.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.5-gcccore-11.2.0 |
|
cwltool
Common Workflow Language (CWL) is an open standard for describing how to run command line tools and connect them to create workflows.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.1.20231114134824 |
|
cython
Cython is an optimising static compiler for both the Python programming language and the extended Cython programming language (based on Pyrex).
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.1.2-gcccore-14.3.0 |
|
| 3.0.10-gcccore-13.2.0 |
|
| 3.0.8-gcccore-12.3.0 |
|
dalton
The Dalton code is a powerful tool for a wide range of molecular properties at different levels of theory. Any published work arising from use of one of the Dalton2016 programs must acknowledge that by a proper reference, https://www.daltonprogram.org/www/citation.html.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2025.0-gomkl-2023a |
|
| 2025.0-gmkl-2023a-smp-maxorb-cc-1500 |
|
| 2025.0-foss-2023a-mxsp-500 |
|
| 2025.0-foss-2023a |
|
| 2020.0-gmkl-2023a-smp-maxorb-cc-1500 |
|
| 2020.0-foss-2021b-smp-maxorb-cc-1500 |
|
| 2020.0-foss-2021b-smp |
|
| 2020.0-foss-2021b-int32-smp-maxorb-cc-1500 |
|
| 2020.0-foss-2021b |
|
dapl
Mellanox OpenFabrics Enterprise Distribution for Linux (MLNX_OFED)
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.1.10.1 |
|
dask
Dask natively scales Python. Dask provides advanced parallelism for analytics, enabling performance at scale for the tools you love.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2025.5.1-gfbf-2023b |
|
| 2024.5.1-gfbf-2023b |
|
| 2023.12.1-foss-2023a |
|
db
Berkeley DB enables the development of custom data management solutions, without the overhead traditionally associated with such custom projects.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 18.1.40-gcccore-12.2.0 |
|
| 18.1.40-gcccore-11.3.0 |
|
| 18.1.40-gcccore-11.2.0 |
|
| 18.1.40-gcccore-10.3.0 |
|
| 18.1.40-gcccore-10.2.0 |
|
| 18.1.40 |
|
| 18.1.32-gcccore-9.3.0 |
|
| 18.1.32-gcccore-8.3.0 |
|
| 18.1.32-gcccore-8.2.0 |
|
db_file
Perl5 access to Berkeley DB version 1.x.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.856-gcccore-10.3.0 |
|
| 1.855-gcccore-10.2.0 |
|
dbcsr
DBCSR is a standalone sparse matrix library designed to efficiently perform sparse matrix matrix multiplication, among other operations. It is MPI and OpenMP parallel, and can exploit accelerators.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.2.0-intel-2021a |
|
| 2.2.0-foss-2021b |
|
dbus
D-Bus is a message bus system, a simple way for applications to talk to one another. In addition to interprocess communication, D-Bus helps coordinate process lifecycle; it makes it simple and reliable to code a "single instance" application or daemon, and to launch applications and daemons on demand when their services are needed.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.15.4-gcccore-12.3.0 |
|
| 1.14.0-gcccore-11.3.0 |
|
| 1.13.18-gcccore-11.2.0 |
|
| 1.13.18-gcccore-10.3.0 |
|
| 1.13.18-gcccore-10.2.0 |
|
| 1.13.18 |
|
dbus-glib
D-Bus is a message bus system, a simple way for applications to talk to one another.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.112-gcccore-11.2.0 |
|
| 0.112-gcccore-10.3.0 |
|
deepdiff
DeepDiff: Deep Difference of dictionaries, iterables and almost any other object recursively.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 5.0.2-gcccore-11.2.0-python-3.9.6 |
|
| 5.0.2-gcccore-10.2.0-python-3.8.6 |
|
deepfri
Deep functional residue identification
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.0.0 |
|
deeptime
Deeptime is a general purpose Python library offering various tools to estimate dynamical models based on time-series data including conventional linear learning methods, such as Markov State Models (MSMs), Hidden Markov Models (HMMs) and Koopman models, as well as kernel and deep learning approaches such as VAMPnets and deep MSMs.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.4.4-foss-2023a-python-3.11.3 |
|
dendropy
A Python library for phylogenetics and phylogenetic computing: reading, writing, simulation, processing and manipulation of phylogenetic trees (phylogenies) and characters.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.5.2-gcccore-11.2.0 |
|
| 4.5.2-gcccore-10.2.0 |
|
dftb+
DFTB+ is a fast and efficient versatile quantum mechanical simulation package. It is based on the Density Functional Tight Binding (DFTB) method, containing almost all of the useful extensions which have been developed for the DFTB framework so far. Using DFTB+ you can carry out quantum mechanical simulations like with ab-initio density functional theory based packages, but in an approximate way gaining typically around two order of magnitude in speed.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 24.1-intel-2021a |
|
| 24.1-foss-2022a |
|
| 23.1-intel-2021a |
|
| 22.2-intel-2021a |
|
| 21.2-intel-2021a.lua |
|
| 21.2-intel-2021a |
|
dftd3-lib
This is a repackaged version of the DFTD3 program by S. Grimme and his coworkers. The original program (V3.1 Rev 1) was downloaded at 2016-04-03. It has been converted to free format and encapsulated into modules.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.9-intel-compilers-2021.4.0 |
|
| 0.9-intel-compilers-2021.2.0 |
|
| 0.9-gcccore-11.3.0 |
|
dftd4
This is a repackaged version of the DFTD3 program by S. Grimme and his coworkers. The original program (V3.1 Rev 1) was downloaded at 2016-04-03. It has been converted to free format and encapsulated into modules.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.4.0-intel-2023b |
|
| 3.4.0-intel-2021b |
|
diagmc
MOAB: Mesh-Oriented datABase
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.2.4-foss-2023a |
|
dill
dill extends python's pickle module for serializing and de-serializing python objects to the majority of the built-in python types. Serialization is the process of converting an object to a byte stream, and the inverse of which is converting a byte stream back to on python object hierarchy.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.3.7-gcccore-12.3.0 |
|
| 0.3.6-gcccore-11.3.0 |
|
dirac
DIRAC: Program for Atomic and Molecular Direct Iterative Relativistic All-electron Calculations
| Versions | Environment loading command (via Lmod) |
|---|---|
| 25.0-intel-2021b-int64 |
|
| 25.0-intel-2021b |
|
| 24.0-intel-2021b-int64 |
|
| 24.0-intel-2021b |
|
| 24.0-foss-2021b-exacc-v2 |
|
| 24.0-foss-2021b-exacc |
|
| 23.0-intel-2023a-int64 |
|
| 23.0-intel-2021b |
|
| 22.0-intel-2021b |
|
| 21.1-intel-2021a-python-2.7.18-mpi-int64 |
|
| 21.1-intel-2021a-python-2.7.18-int64 |
|
| 19.0-intel-2020a-python-2.7.18-mpi-int64 |
|
dl_monte
DL_MONTE: open-source software for applying Monte Carlo molecular simulation to a wide range of systems.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.07-intel-2021b |
|
dl_poly_4
DL_POLY is a general purpose classical molecular dynamics (MD) simulation software
| Versions | Environment loading command (via Lmod) |
|---|---|
| 5.0.0-intel-2021b |
|
dl_poly_classic
DL_POLY Classic is a general purpose (parallel and serial) molecular dynamics simulation package.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.10-intel-2021b |
|
docopt
Command-line interface description language.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.6.2-gcccore-11.2.0 |
|
docopt.cpp
docopt.cpp: A C++11 Port
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.6.3-gcccore-11.2.0 |
|
double-conversion
Efficient binary-decimal and decimal-binary conversion routines for IEEE doubles.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.3.0-gcccore-12.3.0 |
|
| 3.2.0-gcccore-11.3.0 |
|
| 3.1.5-gcccore-11.2.0 |
|
| 3.1.5-gcccore-10.3.0 |
|
| 3.1.5-gcccore-10.2.0 |
|
doxygen
Doxygen is a documentation system for C++, C, Java, Objective-C, Python, IDL (Corba and Microsoft flavors), Fortran, VHDL, PHP, C#, and to some extent D.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.9.8-gcccore-13.2.0 |
|
| 1.9.7-gcccore-12.3.0 |
|
| 1.9.5-gcccore-12.2.0 |
|
| 1.9.5 |
|
| 1.9.4-gcccore-11.3.0 |
|
| 1.9.1-gcccore-11.2.0 |
|
| 1.9.1-gcccore-10.3.0 |
|
| 1.8.20-gcccore-10.2.0 |
|
| 1.8.16-gcccore-8.3.0 |
|
dream
Disruption Runaway Electron Analysis Model (DREAM) code
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1b32d03-foss-2021b |
|
drippyattack
Homepage: https://www.DRIPPYATTACK.org
| Versions | Environment loading command (via Lmod) |
|---|---|
| 5.1 |
|
dtcmp
The Datatype Comparison (DTCMP) Library provides pre-defined and user-defined comparison operations to compare the values of two items which can be arbitrary MPI datatypes. Using these comparison operations, the library provides various routines for manipulating data, which may be distributed over the processes of an MPI communicator.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.1.2-gompi-2021b |
|
dx-toolkit
The DNAnexus Platform SDK - also called dx-toolkit - includes the dx command-line client; tools for building and debugging apps; utilities for working with DNA data on the DNAnexus Platform; and Python, Java, C++ and R bindings for working on the DNAnexus Platform.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.349.0-gcc-11.2.0 |
|
easyspin
EasySpin is a MATLAB toolbox for simulating and fitting a wide range of Electron Paramagnetic Resonance (EPR) spectra.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 6.0.0-dev36 |
|
| 5.2.35 |
|
| 5.2.30 |
|
easyvvuq
The aim of EasyVVUQ is to facilitate verification, validation and uncertainty quantification (VVUQ) for a wide variety of simulations.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.2-gcccore-13.2.0 |
|
ehpath
EHPath ('Electron-Hole Pathways
| Versions | Environment loading command (via Lmod) |
|---|---|
| f246f69-intel-2021b |
|
eigen
Eigen is a C++ template library for linear algebra: matrices, vectors, numerical solvers, and related algorithms.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.4.0-gcccore-13.2.0 |
|
| 3.4.0-gcccore-12.3.0 |
|
| 3.4.0-gcccore-12.2.0 |
|
| 3.4.0-gcccore-11.3.0 |
|
| 3.4.0-gcccore-11.2.0 |
|
| 3.3.9-gcccore-11.2.0 |
|
| 3.3.9-gcccore-10.3.0 |
|
| 3.3.8-gcccore-10.2.0 |
|
| 3.3.7-gcccore-9.3.0 |
|
eigensoft
The EIGENSOFT package combines functionality from our population genetics methods (Patterson et al. 2006) and our EIGENSTRAT stratification correction method (Price et al. 2006). The EIGENSTRAT method uses principal components analysis to explicitly model ancestry differences between cases and controls along continuous axes of variation; the resulting correction is specific to a candidate marker’s variation in frequency across ancestral populations, minimizing spurious associations while maximizing power to detect true associations. The EIGENSOFT package has a built-in plotting script and supports multiple file formats and quantitative phenotypes.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 7.2.1-foss-2021b |
|
elfutils
The elfutils project provides libraries and tools for ELF files and DWARF data.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.189-gcccore-12.3.0 |
|
| 0.187-gcccore-11.3.0 |
|
| 0.185-gcccore-11.2.0 |
|
elixir
Elixir is a dynamic, functional language for building scalable and maintainable applications.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.18.4 |
|
elk
An all-electron full-potential linearised augmented-plane wave (FP-LAPW) code with many advanced features. Written originally at Karl-Franzens-Universität Graz as a milestone of the EXCITING EU Research and Training Network, the code is designed to be as simple as possible so that new developments in the field of density functional theory (DFT) can be added quickly and reliably.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 8.5.10-intel-2021b |
|
elpa
Eigenvalue SoLvers for Petaflop-Applications.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2022.05.001-intel-2022b |
|
| 2021.11.001-intel-2021b |
|
| 2021.11.001-foss-2021b-cuda-11.4.1 |
|
| 2021.05.001-intel-2021b |
|
| 2021.05.001-intel-2021a |
|
| 2021.05.001-foss-2021b |
|
| 2021.05.001-foss-2021a |
|
| 2020.11.001-foss-2020b |
|
elsi
ELSI provides and enhances scalable, open-source software library solutions for electronic structure calculations in materials science, condensed matter physics, chemistry, and many other fields. ELSI focuses on methods that solve or circumvent eigenvalue problems in electronic structure theory. The ELSI infrastructure should also be useful for other challenging eigenvalue problems.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.7.1-intel-2021a-pexsi |
|
emacs
GNU Emacs is an extensible, customizable text editor--and more. At its core is an interpreter for Emacs Lisp, a dialect of the Lisp programming language with extensions to support text editing.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 29.1 |
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| 27.2-gcccore-11.2.0 |
|
| 27.2 |
|
| 27.1-gcccore-10.2.0 |
|
eman2
EMAN2 is a broadly based greyscale scientific image processing suite with a primary focus on processing data from transmission electron microscopes
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.91 |
|
emboss
EMBOSS is 'The European Molecular Biology Open Software Suite' . EMBOSS is a free Open Source software analysis package specially developed for the needs of the molecular biology (e.g. EMBnet) user community.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 6.6.0-gcc-11.2.0-java-13 |
|
enchant-2
Enchant aims to provide a simple but comprehensive abstraction for dealing with different spell checking libraries in a consistent way. A client, such as a text editor or word processor, need not know anything about a specific spell-checker, and since all back-ends are plugins, new spell-checkers can be added without needing any change to the program using Enchant.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.3.3-gcccore-11.2.0 |
|
epanet
EPANET is a software application used throughout the world to model water distribution systems.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.3.0-gcc-13.2.0 |
|
| 2.2.0-gcc-13.2.0 |
|
epstool
Epstool is a utility to create or extract preview images in EPS files, fix bounding boxes and convert to bitmaps.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.09 |
|
erlangotp
Erlang is a general-purpose concurrent, garbage-collected programming language and runtime system.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 28.0 |
|
esa-snap
The Sentinel Application Platform (SNAP) is a common architecture for all Sentinel Toolboxes being jointly developed by Brockmann Consult, SkyWatch and C-S. The SNAP architecture is ideal for Earth Observation processing and analysis due to the following technological innovations: Extensibility, Portability, Modular Rich Client Platform, Generic EO Data Abstraction, Tiled Memory Management, and a Graph Processing Framework.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 12.0.0-java-17 |
|
| 9.0.0 |
|
esmf
The Earth System Modeling Framework (ESMF) is a suite of software tools for developing high-performance, multi-component Earth science modeling applications.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 8.6.0-foss-2023a |
|
| 8.2.0-foss-2021b |
|
espeak-ng
The eSpeak NG is a compact open source software text-to-speech synthesizer for Linux, Windows, Android and other operating systems. It supports more than 100 languages and accents. It is based on the eSpeak engine created by Jonathan Duddington.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.51-gfbf-2023a |
|
et
eT is an open source program with coupled cluster, multiscale and multilevel methods
| Versions | Environment loading command (via Lmod) |
|---|---|
| bc35b13f-gfbf-2023a-libcint |
|
| 3933cc75-gcc-12.3.0-cpint |
|
| 1.9.13-gcc-12.3.0-lmax-10 |
|
| 1.9.13-gcc-11.3.0 |
|
| 1.9.11-gcc-11.3.0 |
|
exatensor
ExaTENSOR is a basic numerical tensor algebra library for distributed HPC systems equipped with multicore CPU and NVIDIA (or AMD) GPU. The hierarchical task-based parallel runtime of ExaTENSOR is based on the virtual tensor algebra processor architecture, i.e. a software processor specialized to numerical tensor algebra workloads on heterogeneous HPC systems (multicore/KNL, NVIDIA or AMD GPU).
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1c363d6-intel-2021b |
|
| 1c363d6-foss-2021b |
|
exiv2
Exiv2 is a Cross-platform C++ library and a command line utility to manage image metadata.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.27.5-gcccore-11.2.0 |
|
exp-t
The EXP-T program package is designed for high-precision modeling of molecular electronic structure using the relativistic Fock space multireference coupled cluster method (FS-RCC).
| Versions | Environment loading command (via Lmod) |
|---|---|
| e3753ab-intel-compilers-2021.4.0-debug |
|
| e3753ab-intel-compilers-2021.4.0 |
|
| e3753ab-iimkl-2024a |
|
| e3753ab-gfbf-2023a |
|
| 3fe5547-intel-compilers-2021.4.0 |
|
| 1.8.5-iimkl-2023b |
|
expat
Expat is an XML parser library written in C. It is a stream-oriented parser in which an application registers handlers for things the parser might find in the XML document (like start tags).
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.7.1-gcccore-14.3.0 |
|
| 2.5.0-gcccore-13.2.0 |
|
| 2.5.0-gcccore-12.3.0 |
|
| 2.4.9-gcccore-12.2.0 |
|
| 2.4.9 |
|
| 2.4.8-gcccore-11.3.0 |
|
| 2.4.8 |
|
| 2.4.1-gcccore-11.2.0 |
|
| 2.4.1 |
|
| 2.2.9-gcccore-10.3.0 |
|
| 2.2.9-gcccore-10.2.0 |
|
| 2.2.9-gcccore-9.3.0 |
|
| 2.2.7-gcccore-8.3.0 |
|
| 2.2.6-gcccore-8.2.0 |
|
| 2.2.5-gcccore-7.3.0 |
|
expecttest
This library implements expect tests (also known as "golden" tests). Expect tests are a method of writing tests where instead of hard-coding the expected output of a test, you run the test to get the output, and the test framework automatically populates the expected output. If the output of the test changes, you can rerun the test with the environment variable EXPECTTEST_ACCEPT=1 to automatically update the expected output.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.1.3-gcccore-10.3.0 |
|
extrae
Extrae is the core instrumentation package developed by the Performance Tools group at BSC. Extrae is capable of instrumenting applications based on MPI, OpenMP, pthreads, CUDA1, OpenCL1, and StarSs1 using different instrumentation approaches. The information gathered by Extrae typically includes timestamped events of runtime calls, performance counters and source code references. Besides, Extrae provides its own API to allow the user to manually instrument his or her application.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.0.1-gompi-2021b |
|
fac
A software packge for the calculation of various atomic processes.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3a7db3d-gcc-11.2.0 |
|
| 3a7db3d-foss-2021b |
|
| 1.1.4-foss-2021b |
|
fastp
A tool designed to provide fast all-in-one preprocessing for FastQ files. This tool is developed in C++ with multithreading supported to afford high performance.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.23.2-gcc-11.2.0 |
|
fastqc
FastQC is a quality control application for high throughput sequence data. It reads in sequence data in a variety of formats and can either provide an interactive application to review the results of several different QC checks, or create an HTML based report which can be integrated into a pipeline.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.11.9-java-11 |
|
fastsimcoal2
Fast sequential markov coalescent simulation of genomic data under complex evolutionary models
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.8 |
|
| 2.7 |
|
fds
Fire Dynamics Simulator (FDS) is a large-eddy simulation (LES) code for low-speed flows, with an emphasis on smoke and heat transport from fires.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 6.8.0-intel-2022b |
|
ffmpeg
A complete, cross-platform solution to record, convert and stream audio and video.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 7.0-gcccore-12.3.0 |
|
| 6.0-gcccore-12.3.0 |
|
| 5.0.1-gcccore-11.3.0-full |
|
| 5.0.1-gcccore-11.3.0 |
|
| 4.4.2-gcccore-11.3.0 |
|
| 4.3.2-gcccore-11.2.0 |
|
| 4.3.2-gcccore-10.3.0 |
|
| 4.3.1-gcccore-10.2.0 |
|
ffnvcodec
FFmpeg nvidia headers. Adds support for nvenc and nvdec. Requires Nvidia GPU and drivers to be present (picked up dynamically).
| Versions | Environment loading command (via Lmod) |
|---|---|
| 12.0.16.0 |
|
| 11.1.5.2 |
|
fftw
FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.3.10-intel-compilers-2023.1.0 |
|
| 3.3.10-iimpi-2021b |
|
| 3.3.10-gompi-2021b |
|
| 3.3.10-gcc-13.3.0 |
|
| 3.3.10-gcc-13.2.0 |
|
| 3.3.10-gcc-12.3.0 |
|
| 3.3.10-gcc-12.2.0 |
|
| 3.3.10-gcc-11.3.0 |
|
| 3.3.9-nvhpc-22.3 |
|
| 3.3.9-intel-2021b |
|
| 3.3.9-intel-2021a |
|
| 3.3.9-gompi-2021a |
|
| 3.3.9-gompi-2021.07 |
|
| 3.3.8-iomkl-2020b |
|
| 3.3.8-intel-2021a |
|
| 3.3.8-intel-2020b |
|
| 3.3.8-intel-2020a |
|
| 3.3.8-gompic-2020b |
|
| 3.3.8-gompi-2020b |
|
| 3.3.8-gompi-2019b |
|
fftw.mpi
FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.3.10-gompi-2023b |
|
| 3.3.10-gompi-2023a |
|
| 3.3.10-gompi-2022b |
|
| 3.3.10-gompi-2022a |
|
figbird
Filling Gaps by Iterative Read Distribution
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.2.1-gcc-11.2.0-2039edb |
|
file
The file command is 'a file type guesser', that is, a command-line tool that tells you in words what kind of data a file contains.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 5.41-gcccore-11.2.0 |
|
| 5.39-gcccore-10.3.0 |
|
firefox
Firefox is a free, open source Web browser for Windows, Linux and Mac OS X. It is based on the Mozilla code base and offers customization options and features such as its capability to block pop-up windows, tabbed browsing, privacy and security measures, smart searching, and RSS live bookmarks.
| Versions | Environment loading command (via Lmod) |
|---|---|
| current |
|
fizz
Fizz is a TLS 1.3 implementation.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2023.08.07.00-gcc-11.3.0 |
|
| 2021.12.13.00-gcc-11.3.0 |
|
| 2021.11.29.00-gcc-11.3.0 |
|
flac
FLAC stands for Free Lossless Audio Codec, an audio format similar to MP3, but lossless, meaning that audio is compressed in FLAC without any loss in quality.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.4.2-gcccore-12.3.0 |
|
| 1.3.4-gcccore-11.3.0 |
|
| 1.3.3-gcccore-11.2.0 |
|
| 1.3.3-gcccore-10.3.0 |
|
| 1.3.3-gcccore-10.2.0 |
|
flash
FLASH (Fast Length Adjustment of SHort reads) is a very fast and accurate software tool to merge paired-end reads from next-generation sequencing experiments.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.2.11-gcc-11.2.0 |
|
flask
Flask is a lightweight WSGI web application framework. It is designed to make getting started quick and easy, with the ability to scale up to complex applications. This module includes the Flask extensions: Flask-Cors
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.2.2-gcccore-11.3.0 |
|
| 2.0.2-gcccore-11.2.0 |
|
| 1.1.4-gcccore-10.3.0 |
|
flatbuffers
FlatBuffers: Memory Efficient Serialization Library
| Versions | Environment loading command (via Lmod) |
|---|---|
| 23.5.26-gcccore-12.3.0 |
|
| 2.0.7-gcccore-11.3.0 |
|
| 2.0.0-gcccore-11.2.0 |
|
| 2.0.0-gcccore-10.3.0 |
|
| 1.12.0-gcccore-10.2.0 |
|
flatbuffers-python
Python Flatbuffers runtime library.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 23.5.26-gcccore-12.3.0 |
|
| 2.0-gcccore-11.2.0 |
|
| 2.0-gcccore-10.3.0 |
|
| 1.12-gcccore-10.2.0 |
|
flex
Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, sometimes called a tokenizer, is a program which recognizes lexical patterns in text.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.6.4-gcccore-14.3.0 |
|
| 2.6.4-gcccore-13.3.0 |
|
| 2.6.4-gcccore-13.2.0 |
|
| 2.6.4-gcccore-13.1.0 |
|
| 2.6.4-gcccore-12.3.0 |
|
| 2.6.4-gcccore-12.2.0 |
|
| 2.6.4-gcccore-11.3.0 |
|
| 2.6.4-gcccore-11.2.0 |
|
| 2.6.4-gcccore-10.3.0 |
|
| 2.6.4-gcccore-10.2.0 |
|
| 2.6.4-gcccore-9.3.0 |
|
| 2.6.4-gcccore-8.3.0 |
|
| 2.6.4-gcccore-8.2.0 |
|
| 2.6.4-gcccore-7.3.0 |
|
| 2.6.4 |
|
| 2.6.3 |
|
| 2.6.0 |
|
| 2.5.39 |
|
flexiblas
FlexiBLAS is a wrapper library that enables the exchange of the BLAS and LAPACK implementation used by a program without recompiling or relinking it.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.4.4-gcc-13.3.0 |
|
| 3.3.1-gcc-13.2.0 |
|
| 3.3.1-gcc-12.3.0 |
|
| 3.2.1-gcc-12.2.0 |
|
| 3.2.0-gcc-11.3.0 |
|
| 3.0.4-gcc-11.2.0 |
|
| 3.0.4-gcc-10.3.0 |
|
flit
A simple packaging tool for simple packages.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.12.0-gcccore-14.3.0 |
|
| 3.9.0-gcccore-13.2.0 |
|
| 3.9.0-gcccore-12.3.0 |
|
flook
The fortran-Lua-hook library.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.8.4-gcc-12.3.0 |
|
fltk
FLTK is a cross-platform C++ GUI toolkit for UNIX/Linux (X11), Microsoft Windows, and MacOS X. FLTK provides modern GUI functionality without the bloat and supports 3D graphics via OpenGL and its built-in GLUT emulation.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.3.8-gcccore-11.3.0 |
|
| 1.3.7-gcccore-11.2.0 |
|
| 1.3.5-gcccore-10.2.0 |
|
| 1.3.5-gcccore-9.3.0 |
|
fluka
FLUKA is a general purpose tool for calculations of particle transport and interactions with matter, covering an extended range of applications spanning from proton and electron accelerator shielding to target design, calorimetry, activation, dosimetry, detector design, Accelerator Driven Systems, cosmic rays, neutrino physics, radiotherapy etc.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2024.1.3-gcc-11.2.0 |
|
| 2021.2.9-gcc-10.3.0 |
|
flye
Flye is a de novo assembler for long and noisy reads, such as those produced by PacBio and Oxford Nanopore Technologies.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.9.4-gcc-12.3.0 |
|
fmt
fmt (formerly cppformat) is an open-source formatting library.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 9.1.0-gcccore-11.3.0 |
|
| 8.0.1-gcccore-11.3.0 |
|
folly
Folly: Facebook Open-source Library
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2023.08.07.00-gcc-11.3.0 |
|
| 2021.12.13.00-gcc-11.3.0 |
|
| 2021.11.29.00-gcc-11.3.0 |
|
| 2021.01.04.00-gcc-11.3.0 |
|
fontconfig
Fontconfig is a library designed to provide system-wide font configuration, customization and application access.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.14.2-gcccore-13.2.0 |
|
| 2.14.2-gcccore-12.3.0 |
|
| 2.14.1-gcccore-12.2.0 |
|
| 2.14.0-gcccore-11.3.0 |
|
| 2.13.94-gcccore-11.2.0-old_libpng |
|
| 2.13.94-gcccore-11.2.0 |
|
| 2.13.94 |
|
| 2.13.93-gcccore-10.3.0 |
|
| 2.13.92-gcccore-10.2.0 |
|
| 2.13.92-gcccore-9.3.0 |
|
| 2.13.1-gcccore-8.3.0 |
|
foss
GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2023b |
|
| 2023a |
|
| 2022b |
|
| 2022a |
|
| 2021b |
|
| 2021a |
|
| 2020b |
|
| 2019b |
|
fosscuda
GCC based compiler toolchain __with CUDA support__, and including OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2020b |
|
fplll
fplll contains implementations of several lattice algorithms. The implementation relies on floating-point orthogonalization, and the 1982 paper from Lenstra, Lenstra Jr. and Lovasz (LLL) is central to the code, hence the name.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 5.4.5-gcccore-11.2.0 |
|
freeglut
freeglut is a completely OpenSourced alternative to the OpenGL Utility Toolkit (GLUT) library.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.4.0-gcccore-12.3.0 |
|
| 3.2.1-gcccore-11.2.0-old_libpng |
|
| 3.2.1-gcccore-11.2.0 |
|
| 3.2.1-gcccore-10.3.0 |
|
freeimage
FreeImage is an Open Source library project for developers who would like to support popular graphics image formats like PNG, BMP, JPEG, TIFF and others as needed by today's multimedia applications. FreeImage is easy to use, fast, multithreading safe.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.18.0-gcccore-11.2.0 |
|
freesurfer
FreeSurfer is a set of tools for analysis and visualization of structural and functional brain imaging data. FreeSurfer contains a fully automatic structural imaging stream for processing cross sectional and longitudinal data.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 7.4.1-centos8_x86_64 |
|
freetype
FreeType 2 is a software font engine that is designed to be small, efficient, highly customizable, and portable while capable of producing high-quality output (glyph images). It can be used in graphics libraries, display servers, font conversion tools, text image generation tools, and many other products as well.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.13.2-gcccore-13.2.0 |
|
| 2.13.0-gcccore-12.3.0 |
|
| 2.12.1-gcccore-12.2.0 |
|
| 2.12.1-gcccore-11.3.0 |
|
| 2.12.1 |
|
| 2.11.0-gcccore-11.2.0-old_libpng |
|
| 2.11.0-gcccore-11.2.0 |
|
| 2.11.0 |
|
| 2.10.4-gcccore-10.3.0 |
|
| 2.10.3-gcccore-10.2.0 |
|
| 2.10.1-gcccore-9.3.0 |
|
| 2.10.1-gcccore-8.3.0 |
|
| 2.9.1-gcccore-8.3.0 |
|
| 2.9.1-gcccore-8.2.0 |
|
freexl
FreeXL is an open source library to extract valid data from within an Excel (.xls) spreadsheet.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.0.6-gcccore-11.2.0 |
|
fribidi
The Free Implementation of the Unicode Bidirectional Algorithm.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.0.12-gcccore-12.3.0 |
|
| 1.0.12-gcccore-11.3.0 |
|
| 1.0.10-gcccore-11.2.0 |
|
| 1.0.10-gcccore-10.3.0 |
|
| 1.0.10-gcccore-10.2.0 |
|
| 1.0.10 |
|
fsl
FSL is a comprehensive library of analysis tools for FMRI, MRI and DTI brain imaging data.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 6.0.5.1-foss-2021a |
|
funtools
Funtools is a "minimal buy-in" FITS library and utility package originally developed at the the High Energy Astrophysics Division of SAO. Although no longer actively supported at SAO, it is still widely used within the astronomical community, especially among X-ray astronomers.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.4.8-gcc-11.2.0 |
|
fuse
The reference implementation of the Linux FUSE (Filesystem in Userspace) interface
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.14.1-gcccore-11.3.0 |
|
g2clib
Library contains GRIB2 encoder/decoder ('C' version).
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.6.3-gcccore-11.2.0 |
|
g2lib
Library contains GRIB2 encoder/decoder and search/indexing routines.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.2.0-gcccore-11.2.0 |
|
gamess-us
No description available
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2024.2-gomkl-2021b-omp |
|
| 2024.2-gomkl-2021b |
|
| 2022.1-foss-2021b |
|
gams
GAMS
| Versions | Environment loading command (via Lmod) |
|---|---|
| 24.0 |
|
gar2ped
No description available
| Versions | Environment loading command (via Lmod) |
|---|---|
| 13-Dec-1996 |
|
gatk
The Genome Analysis Toolkit or GATK is a software package developed at the Broad Institute to analyse next-generation resequencing data. The toolkit offers a wide variety of tools, with a primary focus on variant discovery and genotyping as well as strong emphasis on data quality assurance. Its robust architecture, powerful processing engine and high-performance computing features make it capable of taking on projects of any size.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.2.3.0-gcccore-11.2.0-java-11 |
|
| 4.2.0.0-gcccore-10.2.0-java-11 |
|
gaussian
No description available
| Versions | Environment loading command (via Lmod) |
|---|---|
| g16.C.02-binary |
|
| g16.C.01-modified |
|
| g16.C.01 |
|
| g16.A.03 |
|
gc
The Boehm-Demers-Weiser conservative garbage collector can be used as a garbage collecting replacement for C malloc or C++ new.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 8.2.0-gcccore-11.2.0 |
|
| 8.2.0 |
|
| 7.6.12-gcccore-9.3.0 |
|
gcc
The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).
| Versions | Environment loading command (via Lmod) |
|---|---|
| 13.3.0 |
|
| 13.2.0 |
|
| 13.1.0 |
|
| 12.3.0 |
|
| 12.2.0 |
|
| 11.3.0 |
|
| 11.2.0 |
|
| 10.3.0 |
|
| 10.2.0 |
|
| 9.3.0 |
|
| 8.3.0 |
|
| 8.2.0-2.31.1 |
|
| 7.3.0-2.30 |
|
gcccore
The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).
| Versions | Environment loading command (via Lmod) |
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| 14.3.0 |
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| 13.3.0 |
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| 13.2.0 |
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| 13.1.0 |
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| 12.3.0 |
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| 12.2.0 |
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| 11.3.0 |
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| 11.2.0 |
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| 10.3.0 |
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| 10.2.0 |
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| 9.3.0 |
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| 8.3.0 |
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| 8.2.0 |
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| 7.3.0 |
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| 6.5.0 |
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gcccuda
GNU Compiler Collection (GCC) based compiler toolchain, along with CUDA toolkit.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2020b |
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| 2020a |
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gconf
GConf is a system for storing application preferences. It is intended for user preferences; not configuration of something like Apache, or arbitrary data storage.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.2.6-gcccore-11.2.0 |
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| 3.2.6-gcccore-10.3.0 |
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gctf
Gctf: real-time CTF determination and correction, Kai Zhang, 2016
| Versions | Environment loading command (via Lmod) |
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| 1.18-phase-plate |
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| 1.06 |
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gdal
GDAL is a translator library for raster geospatial data formats that is released under an X/MIT style Open Source license by the Open Source Geospatial Foundation. As a library, it presents a single abstract data model to the calling application for all supported formats. It also comes with a variety of useful commandline utilities for data translation and processing.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.7.1-foss-2023a |
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| 3.4.0-foss-2021b |
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| 3.3.2-foss-2021b-hdf5-1.10.8 |
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| 3.3.2-foss-2021b |
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| 3.3.0-foss-2021a |
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| 3.2.1-foss-2020b |
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gdb
The GNU Project Debugger
| Versions | Environment loading command (via Lmod) |
|---|---|
| 12.1-gcccore-11.2.0 |
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| 11.1-gcccore-11.2.0 |
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| 10.2-gcccore-10.3.0 |
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gdk-pixbuf
The Gdk Pixbuf is a toolkit for image loading and pixel buffer manipulation. It is used by GTK+ 2 and GTK+ 3 to load and manipulate images. In the past it was distributed as part of GTK+ 2 but it was split off into a separate package in preparation for the change to GTK+ 3.
| Versions | Environment loading command (via Lmod) |
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| 2.42.10-gcccore-12.3.0 |
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| 2.42.6-gcccore-11.2.0 |
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| 2.42.6-gcccore-10.3.0 |
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| 2.42.6 |
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| 2.40.0-gcccore-10.2.0 |
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gdrcopy
A low-latency GPU memory copy library based on NVIDIA GPUDirect RDMA technology.
| Versions | Environment loading command (via Lmod) |
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| 2.4-gcccore-13.2.0 |
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| 2.3.1-gcccore-12.3.0 |
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| 2.3-gcccore-11.3.0 |
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| 2.3-gcccore-11.2.0 |
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| 2.2-gcccore-10.3.0 |
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| 2.1-gcccore-10.2.0-cuda-11.1.1 |
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| 2.1--cuda-11.1.1-gcccore-10.2.0 |
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geant4
Geant4 is a toolkit for the simulation of the passage of particles through matter. Its areas of application include high energy, nuclear and accelerator physics, as well as studies in medical and space science.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 11.2.0-gcc-11.3.0 |
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| 11.0.2-gcc-11.2.0-gdml |
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| 11.0.2-gcc-11.2.0 |
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| 10.7.1-gcc-10.2.0 |
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| 10.6.3-gcc-11.2.0 |
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| 10.6.3-gcc-10.2.0 |
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geant4-data
Datasets for Geant4.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 11.2 |
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| 10.7 |
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| 10.6.3 |
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gedi
Gedi is a software platform for working with genomic data such as sequencing reads, sequences, per-base numeric values or annotations written in Java.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.0.6a |
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gengetopt
Gengetopt is a tool to write command line option parsing code for C programs.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.23-gcccore-11.2.0 |
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geopy
geopy is a Python client for several popular geocoding web services. geopy makes it easy for Python developers to locate the coordinates of addresses, cities, countries, and landmarks across the globe using third-party geocoders and other data sources.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.4.1-foss-2021b-python-3.9.6 |
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geos
GEOS (Geometry Engine - Open Source) is a C++ port of the Java Topology Suite (JTS)
| Versions | Environment loading command (via Lmod) |
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| 3.12.0-gcc-12.3.0 |
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| 3.10.3-gcc-11.3.0 |
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| 3.9.1-intel-compilers-2021.2.0 |
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| 3.9.1-gcc-11.2.0 |
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| 3.9.1-gcc-10.3.0 |
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| 3.9.1-gcc-10.2.0 |
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getorganelle
This toolkit assemblies organelle genome from genomic skimming data.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.7.6.1-foss-2021b |
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gettext
GNU 'gettext' is an important step for the GNU Translation Project, as it is an asset on which we may build many other steps. This package offers to programmers, translators, and even users, a well integrated set of tools and documentation
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.25-gcccore-14.3.0 |
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| 0.25 |
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| 0.22.5 |
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| 0.22-gcccore-13.2.0 |
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| 0.22 |
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| 0.21.1-gcccore-12.3.0 |
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| 0.21.1-gcccore-12.2.0 |
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| 0.21.1 |
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| 0.21-gcccore-11.3.0 |
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| 0.21-gcccore-11.2.0 |
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| 0.21-gcccore-10.3.0 |
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| 0.21-gcccore-10.2.0 |
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| 0.21 |
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| 0.20.1-gcccore-9.3.0 |
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| 0.20.1-gcccore-8.3.0 |
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| 0.20.1 |
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| 0.19.8.1 |
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gfbf
GNU Compiler Collection (GCC) based compiler toolchain, including FlexiBLAS (BLAS and LAPACK support) and (serial) FFTW.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2023b |
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| 2023a |
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| 2022b |
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| 2022a |
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gflags
The gflags package contains a C++ library that implements commandline flags processing. It includes built-in support for standard types such as string and the ability to define flags in the source file in which they are used.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.2.2-gcccore-11.3.0 |
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ghostscript
Ghostscript is a versatile processor for PostScript data with the ability to render PostScript to different targets. It used to be part of the cups printing stack, but is no longer used for that.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 9.56.1-gcccore-11.3.0 |
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| 9.54.0-gcccore-11.2.0 |
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| 9.54.0-gcccore-10.3.0 |
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| 9.53.3-gcccore-10.2.0 |
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giflib
giflib is a library for reading and writing gif images. It is API and ABI compatible with libungif which was in wide use while the LZW compression algorithm was patented.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 5.2.1-gcccore-13.2.0 |
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| 5.2.1-gcccore-12.3.0 |
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| 5.2.1-gcccore-11.3.0 |
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| 5.2.1-gcccore-11.2.0 |
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| 5.2.1-gcccore-10.3.0 |
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| 5.2.1-gcccore-10.2.0 |
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git
Git is a free and open source distributed version control system designed to handle everything from small to very large projects with speed and efficiency.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.50.1-gcccore-14.3.0 |
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| 2.42.0-gcccore-13.2.0 |
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| 2.41.0-gcccore-12.3.0-nodocs |
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| 2.38.1-gcccore-12.2.0-nodocs |
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| 2.36.0-gcccore-11.3.0-nodocs |
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| 2.33.1-nodocs |
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| 2.33.1-gcccore-11.2.0-nodocs |
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| 2.32.0-gcccore-10.3.0-nodocs |
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| 2.28.0-gcccore-10.2.0-nodocs |
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gl2ps
GL2PS: an OpenGL to PostScript printing library
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.4.2-gcccore-12.3.0 |
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| 1.4.2-gcccore-11.2.0-old_libpng |
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| 1.4.2-gcccore-11.2.0 |
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glew
The OpenGL Extension Wrangler Library (GLEW) is a cross-platform open-source C/C++ extension loading library. GLEW provides efficient run-time mechanisms for determining which OpenGL extensions are supported on the target platform.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.2.0-gcccore-11.2.0-egl |
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| 2.1.0-gcccore-11.2.0 |
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glib
GLib is one of the base libraries of the GTK+ project
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.78.1-gcccore-13.2.0 |
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| 2.77.1-gcccore-12.3.0 |
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| 2.72.1-gcccore-11.3.0 |
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| 2.69.1-gcccore-11.2.0 |
|
| 2.69.1 |
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| 2.68.2-gcccore-10.3.0 |
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| 2.66.1-gcccore-10.2.0 |
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glib-networking
Network extensions for GLib
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.72.1-gcccore-11.2.0 |
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glibmm
C++ bindings for Glib
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.66.4-gcccore-10.3.0 |
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glimpse
GLIMPSE2 is a set of tools for phasing and imputation for low-coverage sequencing datasets
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.0.0-gcc-12.2.0 |
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| 1.1.1-gcc-12.2.0 |
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glm
OpenGL Mathematics (GLM) is a header only C++ mathematics library for graphics software based on the OpenGL Shading Language (GLSL) specifications.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.9.9.8-gcccore-11.2.0 |
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| 0.9.9.8-gcccore-8.3.0 |
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| 0.9.9.0-gcccore-8.3.0 |
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globalarrays
Global Arrays (GA) is a Partitioned Global Address Space (PGAS) programming model
| Versions | Environment loading command (via Lmod) |
|---|---|
| 5.8.2-intel-2023b |
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| 5.8.2-intel-2023a |
|
| 5.8.1-intel-2022a |
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glog
A C++ implementation of the Google logging module.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.5.0-gcccore-11.3.0 |
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glpk
The GLPK (GNU Linear Programming Kit) package is intended for solving large-scale linear programming (LP), mixed integer programming (MIP), and other related problems. It is a set of routines written in ANSI C and organized in the form of a callable library.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 5.0-gcccore-12.3.0 |
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| 5.0-gcccore-11.3.0 |
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| 5.0-gcccore-11.2.0 |
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| 5.0-gcccore-10.3.0 |
|
| 4.65-gcccore-10.2.0 |
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gmap-gsnap
GMAP: A Genomic Mapping and Alignment Program for mRNA and EST Sequences GSNAP: Genomic Short-read Nucleotide Alignment Program
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2021-12-17-gcc-11.2.0 |
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gmkl
GNU Compiler Collection (GCC) based compiler toolchain with OpenMPI and MKL
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2023a |
|
| 2021b |
|
gmp
GMP is a free library for arbitrary precision arithmetic, operating on signed integers, rational numbers, and floating point numbers.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 6.3.0-gcccore-13.3.0 |
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| 6.2.1-gcccore-12.3.0 |
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| 6.2.1-gcccore-12.2.0 |
|
| 6.2.1-gcccore-11.3.0 |
|
| 6.2.1-gcccore-11.2.0 |
|
| 6.2.1-gcccore-10.3.0 |
|
| 6.2.1 |
|
| 6.2.0-gcccore-10.2.0 |
|
| 6.2.0-gcccore-9.3.0 |
|
| 6.1.2-gcccore-8.3.0 |
|
| 6.1.2-gcccore-8.2.0 |
|
gmpy2
GMP/MPIR, MPFR, and MPC interface to Python 2.6+ and 3.x
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.1.2-intel-compilers-2021.4.0 |
|
| 2.1.2-gcc-11.2.0 |
|
gmsh
Gmsh is a 3D finite element grid generator with a build-in CAD engine and post-processor.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.11.0-foss-2021b |
|
gmt
The Generic Mapping Tools (GMT) are widely used across the Earth, Ocean, and Planetary sciences and beyond.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 6.5.0-foss-2023a |
|
gmtsar
The Generic Mapping Tools (GMT) are widely used across the Earth, Ocean, and Planetary sciences and beyond.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 6.5-foss-2023a |
|
gmvapich2
GNU Compiler Collection (GCC) based compiler toolchain, including MVAPICH2 for MPI support.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2021b |
|
| 2020a |
|
gmx-mmpbsa
gmx_MMPBSA is a new tool based on AMBER's MMPBSA.py aiming to perform end-state free energy calculations with GROMACS files.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.6.1-intel-2021b |
|
gnuplot
Portable interactive, function plotting utility
| Versions | Environment loading command (via Lmod) |
|---|---|
| 5.4.8-gcccore-12.3.0 |
|
| 5.4.4-gcccore-11.3.0 |
|
| 5.4.2-gcccore-11.2.0 |
|
| 5.4.2-gcccore-10.3.0 |
|
| 5.4.1-gcccore-10.2.0 |
|
gnutls
GnuTLS is a secure communications library implementing the SSL, TLS and DTLS protocols and technologies around them. It provides a simple C language application programming interface (API) to access the secure communications protocols as well as APIs to parse and write X.509, PKCS #12, OpenPGP and other required structures. It is aimed to be portable and efficient with focus on security and interoperability.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.7.3-gcccore-11.2.0 |
|
| 3.7.3 |
|
go
Go is an open source programming language that makes it easy to build simple, reliable, and efficient software.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.23.6 |
|
| 1.22.1 |
|
| 1.18.1 |
|
| 1.17.6 |
|
| 1.17.3 |
|
| 1.16.5 |
|
gobff
GCC and GFortran based compiler toolchain with OpenMPI, BLIS, libFLAME, ScaLAPACK and FFTW.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2020b |
|
gobject-introspection
GObject introspection is a middleware layer between C libraries (using GObject) and language bindings. The C library can be scanned at compile time and generate a metadata file, in addition to the actual native C library. Then at runtime, language bindings can read this metadata and automatically provide bindings to call into the C library.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.76.1-gcccore-12.3.0 |
|
| 1.72.0-gcccore-11.3.0 |
|
| 1.68.0-gcccore-11.2.0 |
|
| 1.68.0-gcccore-10.3.0 |
|
| 1.68.0 |
|
| 1.66.1-gcccore-10.2.0 |
|
gomkl
GNU Compiler Collection (GCC) based compiler toolchain with OpenMPI and MKL
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2023a |
|
| 2021b |
|
gompi
GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2023b |
|
| 2023a |
|
| 2022b |
|
| 2022a |
|
| 2021b |
|
| 2021a |
|
| 2021.07 |
|
| 2020b |
|
| 2020a |
|
| 2019b |
|
| 2019a |
|
gompic
GNU Compiler Collection (GCC) based compiler toolchain along with CUDA toolkit, including OpenMPI for MPI support with CUDA features enabled.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2020b |
|
goodvibes
GoodVibes is a Python program to compute thermochemical data from one or a series of electronic structure calculations.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.2-foss-2021b |
|
googletest
Google's framework for writing C++ tests on a variety of platforms
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.13.0-gcccore-12.3.0 |
|
| 1.11.0-gcccore-11.3.0 |
|
gpaw
GPAW is a density-functional theory (DFT) Python code based on the projector-augmented wave (PAW) method and the atomic simulation environment (ASE). It uses real-space uniform grids and multigrid methods or atom-centered basis-functions.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 23.6.0-intel-2021b |
|
| 22.8.0-intel-2021b |
|
| 21.6.0-foss-2021a |
|
gpaw-setups
PAW setup for the GPAW Density Functional Theory package. Users can install setups manually using 'gpaw install-data' or use setups from this package. The versions of GPAW and GPAW-setups can be intermixed.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.9.20000 |
|
gperf
GNU gperf is a perfect hash function generator. For a given list of strings, it produces a hash function and hash table, in form of C or C++ code, for looking up a value depending on the input string. The hash function is perfect, which means that the hash table has no collisions, and the hash table lookup needs a single string comparison only.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.1-gcccore-13.2.0 |
|
| 3.1-gcccore-12.3.0 |
|
| 3.1-gcccore-12.2.0 |
|
| 3.1-gcccore-11.3.0 |
|
| 3.1-gcccore-11.2.0 |
|
| 3.1-gcccore-10.3.0 |
|
| 3.1-gcccore-10.2.0 |
|
| 3.1-gcccore-9.3.0 |
|
| 3.1-gcccore-8.3.0 |
|
| 3.1 |
|
gperftools
gperftools is a collection of a high-performance multi-threaded malloc() implementation, plus some pretty nifty performance analysis tools. Includes TCMalloc, heap-checker, heap-profiler and cpu-profiler.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.9.1-gcccore-10.3.0 |
|
grace
Grace is a WYSIWYG tool to make two-dimensional plots of numerical data.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 5.1.25-foss-2021b |
|
graphene
Graphene is a thin layer of types for graphic libraries
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.10.8-gcccore-12.3.0 |
|
graphicsmagick
GraphicsMagick is the swiss army knife of image processing.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.3.36-gcccore-11.2.0 |
|
graphite2
Graphite is a "smart font" system developed specifically to handle the complexities of lesser-known languages of the world.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.3.14-gcccore-12.3.0 |
|
| 1.3.14-gcccore-11.3.0 |
|
| 1.3.14-gcccore-11.2.0 |
|
graphviz
Graphviz is open source graph visualization software. Graph visualization is a way of representing structural information as diagrams of abstract graphs and networks. It has important applications in networking, bioinformatics, software engineering, database and web design, machine learning, and in visual interfaces for other technical domains.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.50.0-gcccore-11.2.0 |
|
| 2.47.2-gcccore-10.3.0 |
|
grasp
The General Relativistic Atomic Structure Package (GRASP) is a set of Fortran 90 programs for performing fully-relativistic electron structure calculations of atoms.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2018-foss-2019b |
|
grass
The Geographic Resources Analysis Support System - used for geospatial data management and analysis, image processing, graphics and maps production, spatial modeling, and visualization
| Versions | Environment loading command (via Lmod) |
|---|---|
| 8.2.0-foss-2021b |
|
greenlet
The greenlet package is a spin-off of Stackless, a version of CPython that supports micro-threads called "tasklets". Tasklets run pseudo-concurrently (typically in a single or a few OS-level threads) and are synchronized with data exchanges on "channels". A "greenlet", on the other hand, is a still more primitive notion of micro-thread with no implicit scheduling; coroutines, in other words. This is useful when you want to control exactly when your code runs.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.0.3-gcccore-13.2.0 |
|
| 2.0.2-gcccore-12.3.0 |
|
| 2.0.1-gcccore-11.2.0-python-3.9.6 |
|
groff
Groff (GNU troff) is a typesetting system that reads plain text mixed with formatting commands and produces formatted output.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.23.0-gcccore-13.2.0 |
|
| 1.22.4-gcccore-12.3.0 |
|
| 1.22.4-gcccore-12.2.0 |
|
| 1.22.4-gcccore-11.3.0 |
|
| 1.22.4-gcccore-11.2.0 |
|
| 1.22.4-gcccore-10.3.0 |
|
| 1.22.4-gcccore-10.2.0 |
|
| 1.22.4-gcccore-9.3.0 |
|
| 1.22.4-gcccore-8.3.0 |
|
| 1.22.4 |
|
gromacs
GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. This is a CPU only build, containing both MPI and threadMPI binaries for both single and double precision. It also contains the gmxapi extension for the single precision MPI build.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2025.3-foss-2023b-cuda-12.4.0 |
|
| 2024.3-foss-2021b-cp2k-2024.3 |
|
| 2024.2-gcc-12.3.0-cuda-12.1.1-smp |
|
| 2024.2-foss-2021b-cp2k-2024.3 |
|
| 2024.1-foss-2023a |
|
| 2023.5-foss-2023a-cuda-12.1.1 |
|
| 2023.2-foss-2021b-cp2k-9.1 |
|
| 2023-nvhpc-22.11-cuda-11.7.0 |
|
| 2023-intel-2022b |
|
| 2023-foss-2021b-plumed-2.9b |
|
| 2023-foss-2021b |
|
| 2022.3-foss-2021b-cuda-11.6.0-avx2-256-plumed-2.8.1 |
|
| 2022-intel-2021a-cp2k-9.1 |
|
| 2022-foss-2021b-cuda-11.6.0-avx2-256 |
|
| 2022-foss-2021b-cuda-11.4.1-avx2-256 |
|
| 2022-foss-2021b |
|
| 2021.4-foss-2021b-plumed-2.8.0 |
|
| 2021.4-foss-2021b |
|
| 2021.3-iomkl-2021a-plumed-2.7.2 |
|
| 2021.3-iomkl-2021a |
|
| 2021.3-intel-2021a-plumed-2.7.2-avx2-256 |
|
| 2021.3-intel-2021a-plumed-2.7.2 |
|
| 2021.3-intel-2021a |
|
| 2021.3-intel-2020b-plumed-2.7.2 |
|
| 2021.2-fosscuda-2020b |
|
| 2021-fosscuda-2020b-avx2-256-threadmpi |
|
| 2021-fosscuda-2020b-avx2-256 |
|
| 2021-fosscuda-2020b |
|
| 2021-foss-2020b-constantph |
|
| 2019.2-iomkl-2021a-plumed-2.5.2-avx2-256 |
|
| 2019.2-iomkl-2021a-plumed-2.5.2 |
|
grpcio
gRPC is a modern, open source, high-performance remote procedure call (RPC) framework that can run anywhere. gRPC enables client and server applications to communicate transparently, and simplifies the building of connected systems.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.57.0-gcccore-12.3.0 |
|
gsl
The GNU Scientific Library (GSL) is a numerical library for C and C++ programmers. The library provides a wide range of mathematical routines such as random number generators, special functions and least-squares fitting.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.7-intel-compilers-2021.4.0 |
|
| 2.7-intel-compilers-2021.2.0 |
|
| 2.7-gcc-12.3.0 |
|
| 2.7-gcc-11.3.0 |
|
| 2.7-gcc-11.2.0 |
|
| 2.7-gcc-10.3.0 |
|
| 2.7 |
|
| 2.6-iccifort-2020.4.304 |
|
| 2.6-iccifort-2020.1.217 |
|
| 2.6-gcc-10.2.0 |
|
| 2.6-gcc-9.3.0 |
|
gst-plugins-bad
GStreamer is a library for constructing graphs of media-handling components. The applications it supports range from simple Ogg/Vorbis playback, audio/video streaming to complex audio (mixing) and video (non-linear editing) processing.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.22.5-gcc-12.3.0 |
|
gst-plugins-base
GStreamer is a library for constructing graphs of media-handling components. The applications it supports range from simple Ogg/Vorbis playback, audio/video streaming to complex audio (mixing) and video (non-linear editing) processing.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.22.5-gcc-12.3.0 |
|
| 1.18.5-gcc-11.2.0 |
|
| 1.18.4-gcc-10.3.0 |
|
gstreamer
GStreamer is a library for constructing graphs of media-handling components. The applications it supports range from simple Ogg/Vorbis playback, audio/video streaming to complex audio (mixing) and video (non-linear editing) processing.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.22.5-gcc-12.3.0 |
|
| 1.18.5-gcc-11.2.0 |
|
| 1.18.4-gcc-10.3.0 |
|
| 1.18.4-gcc-10.2.0 |
|
| 1.10.5-gcc-11.2.0 |
|
gtk+
GTK+ is the primary library used to construct user interfaces in GNOME. It provides all the user interface controls, or widgets, used in a common graphical application. Its object-oriented API allows you to construct user interfaces without dealing with the low-level details of drawing and device interaction.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.24.23-gcccore-10.2.0 |
|
gtk2
The GTK+ 2 package contains libraries used for creating graphical user interfaces for applications.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.24.33-gcccore-11.2.0 |
|
| 2.24.33-gcccore-10.3.0 |
|
gtk3
GTK+ is the primary library used to construct user interfaces in GNOME. It provides all the user interface controls, or widgets, used in a common graphical application. Its object-oriented API allows you to construct user interfaces without dealing with the low-level details of drawing and device interaction.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.24.37-gcccore-12.3.0 |
|
| 3.24.31-gcccore-11.2.0 |
|
| 3.24.31 |
|
| 3.24.29-gcccore-10.3.0 |
|
gtk4
GTK+ is the primary library used to construct user interfaces in GNOME. It provides all the user interface controls, or widgets, used in a common graphical application. Its object-oriented API allows you to construct user interfaces without dealing with the low-level details of drawing and device interaction.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.13.1-gcc-12.3.0 |
|
gts
GTS stands for the GNU Triangulated Surface Library. It is an Open Source Free Software Library intended to provide a set of useful functions to deal with 3D surfaces meshed with interconnected triangles.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.7.6-gcccore-11.2.0 |
|
| 0.7.6-gcccore-10.3.0 |
|
guile
Guile is a programming language, designed to help programmers create flexible applications that can be extended by users or other programmers with plug-ins, modules, or scripts.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.0.7-gcccore-11.2.0 |
|
| 3.0.7 |
|
| 1.8.8-gcccore-9.3.0 |
|
gzip
gzip (GNU zip) is a popular data compression program as a replacement for compress
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.14-gcccore-14.3.0 |
|
| 1.13-gcccore-13.3.0 |
|
| 1.13-gcccore-13.2.0 |
|
| 1.12-lustre |
|
| 1.12-gcccore-12.3.0 |
|
| 1.12-gcccore-12.2.0 |
|
| 1.12-gcccore-11.3.0 |
|
| 1.12 |
|
| 1.10-gcccore-11.2.0 |
|
| 1.10-gcccore-10.3.0 |
|
| 1.10-gcccore-10.2.0 |
|
| 1.10-gcccore-9.3.0 |
|
| 1.10 |
|
h5part
H5part (HDF5 Particle Parallel I/O Library)
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.6.5-iimpi-2020a |
|
| 1.6.5-gompi-2019b |
|
h5py
HDF5 for Python (h5py) is a general-purpose Python interface to the Hierarchical Data Format library, version 5. HDF5 is a versatile, mature scientific software library designed for the fast, flexible storage of enormous amounts of data.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.9.0-foss-2023a |
|
| 3.8.0-foss-2022b |
|
| 3.7.0-foss-2022a |
|
| 3.6.0-foss-2021b |
|
| 3.2.1-foss-2021a |
|
| 3.1.0-fosscuda-2020b |
|
| 2.10.0-foss-2021b-python-2.7.18 |
|
halign
HAlign 3: Fast multiple alignment of ultra-large numbers of similar DNA/RNA sequences
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.0.0-java-11 |
|
haproh
Software to call ROH from ancient and present-day DNA using reference haplotypes. Author: Harald Ringbauer, September 2020 Code released under GNU General Public License v3.0
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.64-foss-2023a |
|
| 0.64-foss-2022b |
|
harfbuzz
HarfBuzz is an OpenType text shaping engine.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 5.3.1-gcccore-12.3.0 |
|
| 4.2.1-gcccore-11.3.0 |
|
| 2.8.2-gcccore-11.2.0 |
|
| 2.8.2 |
|
| 2.8.1-gcccore-10.3.0 |
|
| 2.6.7-gcccore-10.2.0 |
|
harminv
Harminv is a free program (and accompanying library) to solve the problem of harmonic inversion - given a discrete-time, finite-length signal that consists of a sum of finitely-many sinusoids (possibly exponentially decaying) in a given bandwidth, it determines the frequencies, decay constants, amplitudes, and phases of those sinusoids.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.4.1-intel-2021b |
|
hatch-jupyter-builder
Hatch Jupyter Builder is a plugin for the hatchling Python build backend. It is primarily targeted for package authors who are providing JavaScript as part of their Python packages. Typical use cases are Jupyter Lab Extensions and Jupyter Widgets.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.9.1-gcccore-14.3.0 |
|
| 0.9.1-gcccore-13.2.0 |
|
hatchling
Extensible, standards compliant build backend used by Hatch, a modern, extensible Python project manager.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.27.0-gcccore-14.3.0 |
|
| 1.18.0-gcccore-13.3.0 |
|
| 1.18.0-gcccore-13.2.0 |
|
| 1.18.0-gcccore-12.3.0 |
|
hdf
HDF (also known as HDF4) is a library and multi-object file format for storing and managing data between machines.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.2.16-2-gcccore-12.3.0 |
|
| 4.2.15-gcccore-11.2.0 |
|
| 4.2.15-gcccore-10.3.0 |
|
| 4.2.15-gcccore-10.2.0 |
|
hdf5
HDF5 is a data model, library, and file format for storing and managing data. It supports an unlimited variety of datatypes, and is designed for flexible and efficient I/O and for high volume and complex data.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.14.4-3-iimpi-2023b-threadsafe |
|
| 1.14.4-3-iimpi-2023b |
|
| 1.14.4-3-gompi-2023b |
|
| 1.14.3-iimpi-2023b |
|
| 1.14.0-iimpi-2023a |
|
| 1.14.0-iimpi-2022b |
|
| 1.14.0-gompi-2023a |
|
| 1.14.0-gompi-2022b |
|
| 1.13.1-gompi-2022a |
|
| 1.12.2-iimpi-2022a |
|
| 1.12.2-gompi-2022a |
|
| 1.12.1-iimpi-2021b |
|
| 1.12.1-gompi-2021b |
|
| 1.12.0-iimpi-2020a |
|
| 1.12.0-gompi-2020a |
|
| 1.10.8-gompi-2021b |
|
| 1.10.7-iimpi-2023b |
|
| 1.10.7-iimpi-2021a |
|
| 1.10.7-iimpi-2020b |
|
| 1.10.7-gompic-2020b |
|
| 1.10.7-gompi-2021a |
|
| 1.10.7-gompi-2020b |
|
| 1.10.5-gompi-2019b |
|
| 1.8.12-iimpi-2020a |
|
| 1.8.12-gompi-2019b |
|
help2man
help2man produces simple manual pages from the '--help' and '--version' output of other commands.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.49.3-gcccore-14.3.0 |
|
| 1.49.3-gcccore-13.3.0 |
|
| 1.49.3-gcccore-13.2.0 |
|
| 1.49.3-gcccore-13.1.0 |
|
| 1.49.3-gcccore-12.3.0 |
|
| 1.49.2-gcccore-12.2.0 |
|
| 1.49.2-gcccore-11.3.0 |
|
| 1.48.3-gcccore-11.2.0 |
|
| 1.48.3-gcccore-10.3.0 |
|
| 1.47.16-gcccore-10.2.0 |
|
| 1.47.12-gcccore-9.3.0 |
|
| 1.47.8-gcccore-8.3.0 |
|
| 1.47.7-gcccore-8.2.0 |
|
| 1.47.4-gcccore-7.3.0 |
|
| 1.47.4 |
|
hh-suite
HH-suite is an open-source software package for sensitive protein sequence searching. It contains programs that can search for similar protein sequences in protein sequence databases.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.3.0-foss-2020b |
|
highway
Highway is a C++ library for SIMD (Single Instruction, Multiple Data), i.e. applying the same operation to 'lanes'.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.0.4-gcccore-12.3.0 |
|
hiredis
Hiredis is a minimalistic C client library for the Redis database. It is minimalistic because it just adds minimal support for the protocol, but at the same time it uses a high level printf-alike API in order to make it much higher level than otherwise suggested by its minimal code base and the lack of explicit bindings for every Redis command.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.0.2-gcccore-11.2.0 |
|
hisat2
HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) against the general human population (as well as against a single reference genome).
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.2.1-gompi-2021b |
|
| 2.2.1-gompi-2021a |
|
hmmer
HMMER is used for searching sequence databases for homologs of protein sequences, and for making protein sequence alignments. It implements methods using probabilistic models called profile hidden Markov models (profile HMMs). Compared to BLAST, FASTA, and other sequence alignment and database search tools based on older scoring methodology, HMMER aims to be significantly more accurate and more able to detect remote homologs because of the strength of its underlying mathematical models. In the past, this strength came at significant computational expense, but in the new HMMER3 project, HMMER is now essentially as fast as BLAST.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.4-gompi-2023a |
|
| 3.3.2-gompi-2021b |
|
| 3.3.2-gompi-2020b |
|
hops
No description available
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.35-foss-2021b |
|
horovod
Horovod is a distributed training framework for TensorFlow.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.23.0-foss-2021a-cuda-11.3.1-pytorch-1.10.0-tensorflow-2.5.3 |
|
| 0.23.0-foss-2021a-cuda-11.3.1-pytorch-1.10.0 |
|
hpcat
HPC Affinity Tracker (HPCAT) provides a comprehensive visualization of system topology and resource affinities tailored for High Performance Computing (HPC) applications. It highlights the relationships between NUMA nodes, CPU cores, Hardware threads, Network interfaces and GPU devices.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.9-gompi-2023b |
|
hpl
HPL is a software package that solves a (random) dense linear system in double precision (64 bits) arithmetic on distributed-memory computers. It can thus be regarded as a portable as well as freely available implementation of the High Performance Computing Linpack Benchmark.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.3-iomkl-2021a |
|
| 2.3-intel-2023a |
|
| 2.3-intel-2021a |
|
| 2.3-gobff-2020b |
|
| 2.3-foss-2020b |
|
htseq
HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.11.3-foss-2021b |
|
htslib
A C library for reading/writing high-throughput sequencing data. This package includes the utilities bgzip and tabix
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.17-gcc-12.2.0 |
|
| 1.14-gcc-11.2.0 |
|
| 1.13-gcc-10.3.0 |
|
| 1.12-gcc-10.2.0 |
|
| 1.12-gcc-9.3.0 |
|
| 1.11-gcc-10.2.0 |
|
hunspell
Hunspell is a spell checker and morphological analyzer library and program designed for languageswith rich morphology and complex word compounding or character encoding.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.7.1-gcccore-11.2.0 |
|
hwloc
The Portable Hardware Locality (hwloc) software package provides a portable abstraction (across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various system attributes such as cache and memory information as well as the locality of I/O devices such as network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering information about modern computing hardware so as to exploit it accordingly and efficiently.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.10.0-gcccore-13.3.0 |
|
| 2.9.2-gcccore-13.2.0 |
|
| 2.9.1-gcccore-12.3.0 |
|
| 2.8.0-gcccore-12.2.0 |
|
| 2.7.1-gcccore-11.3.0 |
|
| 2.5.0-gcccore-11.2.0 |
|
| 2.5.0 |
|
| 2.4.1-gcccore-10.3.0 |
|
| 2.4.1-gcccore-7.3.0 |
|
| 2.2.0-gcccore-10.2.0 |
|
| 2.2.0-gcccore-9.3.0 |
|
| 1.11.12-gcccore-8.3.0 |
|
| 1.11.10-gcc-10.3.0 |
|
hydra
Hydra is a process management system for starting parallel jobs. Hydra is designed to natively work with multiple daemons such as ssh, rsh, pbs, slurm and sge.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.4.2-gcccore-7.3.0 |
|
| 3.4.2-gcc-10.3.0 |
|
| 3.4.2-gcc-9.3.0 |
|
hyperqueue
HyperQueue lets you build a computation plan consisting of a large amount of tasks and then execute it transparently over a system like SLURM/PBS. It dynamically groups jobs into SLURM/PBS jobs and distributes them to fully utilize allocated nodes. You thus do not have to manually aggregate your tasks into SLURM/PBS jobs.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.18.0 |
|
| 0.17.0-liberec |
|
| 0.17.0 |
|
| 0.14.0 |
|
hypothesis
Hypothesis is an advanced testing library for Python. It lets you write tests which are parametrized by a source of examples, and then generates simple and comprehensible examples that make your tests fail. This lets you find more bugs in your code with less work.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 6.90.0-gcccore-13.2.0 |
|
| 6.82.0-gcccore-12.3.0 |
|
| 6.68.2-gcccore-12.2.0 |
|
| 6.46.7-gcccore-11.3.0 |
|
| 6.14.6-gcccore-11.2.0 |
|
| 6.13.1-gcccore-10.3.0 |
|
| 5.41.5-gcccore-10.2.0 |
|
| 5.41.2-gcccore-10.2.0 |
|
| 4.57.1-gcccore-11.2.0-python-2.7.18 |
|
hypre
Hypre is a library for solving large, sparse linear systems of equations on massively parallel computers. The problems of interest arise in the simulation codes being developed at LLNL and elsewhere to study physical phenomena in the defense, environmental, energy, and biological sciences.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.24.0-foss-2021b |
|
| 2.6.0b-foss-2023a |
|
| 2.6.0b-foss-2021b |
|
icc
Intel C and C++ compilers
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2018.3.222-gcc-7.3.0-2.30 |
|
iccifort
Intel C, C++ & Fortran compilers
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2020.4.304 |
|
| 2020.1.217 |
|
| 2019.5.281 |
|
| 2018.3.222-gcc-7.3.0-2.30 |
|
iccifortcuda
Intel C, C++ & Fortran compilers with CUDA toolkit
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2020b |
|
| 2020a |
|
| 2019b |
|
icu
ICU is a mature, widely used set of C/C++ and Java libraries providing Unicode and Globalization support for software applications.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 74.1-gcccore-13.2.0 |
|
| 73.2-gcccore-12.3.0 |
|
| 72.1-gcccore-12.2.0 |
|
| 71.1-gcccore-11.3.0 |
|
| 69.1-gcccore-11.2.0 |
|
| 69.1-gcccore-10.3.0 |
|
| 69.1 |
|
| 67.1-gcccore-10.2.0 |
|
ifort
Intel Fortran compiler
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2018.3.222-gcc-7.3.0-2.30 |
|
iimkl
Intel C/C++ and Fortran compilers, alongside Intel Math Kernel Library (MKL).
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2024a |
|
| 2023b |
|
| 2023a |
|
| 2021b |
|
iimpi
Intel C/C++ and Fortran compilers, alongside Intel MPI.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2023b |
|
| 2023a |
|
| 2022b |
|
| 2022a |
|
| 2021b |
|
| 2021a |
|
| 2020b |
|
| 2020a |
|
iimpic
Intel C/C++ and Fortran compilers, alongside Intel MPI and CUDA.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2020b |
|
| 2020a |
|
imagemagick
ImageMagick is a software suite to create, edit, compose, or convert bitmap images
| Versions | Environment loading command (via Lmod) |
|---|---|
| 7.1.0-37-gcccore-11.3.0 |
|
| 7.1.0-4-gcccore-11.2.0 |
|
| 7.0.11-14-gcccore-10.3.0 |
|
| 7.0.10-35-gcccore-10.2.0 |
|
imake
imake is a Makefile-generator that is intended to make it easier to develop software portably for multiple systems.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.0.8-gcccore-11.2.0 |
|
imath
Imath is a C++ and python library of 2D and 3D vector, matrix, and math operations for computer graphics
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.1.7-gcccore-12.3.0 |
|
| 3.1.5-gcccore-11.3.0 |
|
imkl
Intel oneAPI Math Kernel Library
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2024.2.0 |
|
| 2023.2.0 |
|
| 2023.1.0 |
|
| 2022.2.1 |
|
| 2022.1.0 |
|
| 2022.0.1 |
|
| 2021.4.0 |
|
| 2021.2.0-iompi-2021a |
|
| 2021.2.0-iimpi-2021a |
|
| 2020.4.304-iompi-2020b |
|
| 2020.4.304-iimpic-2020b |
|
| 2020.4.304-iimpi-2020b |
|
| 2020.4.304-gompic-2020b |
|
| 2020.1.217-iimpic-2020a |
|
| 2020.1.217-iimpi-2020a |
|
imkl-fftw
FFTW interfaces using Intel oneAPI Math Kernel Library
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2023.2.0-iimpi-2023b |
|
| 2023.1.0-iimpi-2023a |
|
| 2022.2.1-iimpi-2022b |
|
| 2022.1.0-iimpi-2022a |
|
| 2021.4.0-iimpi-2021b |
|
imod
IMOD is a set of image processing, modeling and display programs used for tomographic reconstruction and for 3D reconstruction of EM serial sections and optical sections.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.11.24-cuda-10.1 |
|
impi
Intel MPI Library, compatible with MPICH ABI
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2021.10.0-intel-compilers-2023.2.1 |
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| 2021.9.0-intel-compilers-2023.1.0 |
|
| 2021.7.1-intel-compilers-2022.2.1 |
|
| 2021.6.0-intel-compilers-2022.1.0 |
|
| 2021.4.0-intel-compilers-2021.4.0 |
|
| 2021.2.0-intel-compilers-2021.2.0 |
|
| 2021.1.1-intel-compilers-2021.1.2 |
|
| 2019.9.304-iccifortcuda-2020b |
|
| 2019.9.304-iccifort-2020.4.304 |
|
| 2019.7.217-iccifortcuda-2020a |
|
| 2019.7.217-iccifort-2020.1.217 |
|
| 2018.3.222-iccifort-2018.3.222-GCC-7.3.0-2.30 |
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infernal
Infernal ("INFERence of RNA ALignment
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.1.4-intel-2021a |
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| 1.1.4-foss-2021b |
|
inputproto
X.org InputProto protocol headers.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.3.1-foss-2023a |
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| 2.3.1-foss-2021b |
|
intel
Compiler toolchain including Intel compilers, Intel MPI and Intel Math Kernel Library (MKL).
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2023b |
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| 2023a |
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| 2022b |
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| 2022a |
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| 2021b |
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| 2021a |
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| 2020b |
|
| 2020a |
|
intel-compilers
Intel C, C++ & Fortran compilers (classic and oneAPI)
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2024.2.0 |
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| 2023.2.1 |
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| 2023.1.0 |
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| 2023.0.0 |
|
| 2022.2.1 |
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| 2022.1.0 |
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| 2022.0.1 |
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| 2021.4.0 |
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| 2021.3.0 |
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| 2021.2.0 |
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| 2021.1.2 |
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intelcuda
Intel Cluster Toolkit Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MPI & Intel MKL, with CUDA toolkit
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2020b |
|
| 2020a |
|
intltool
intltool is a set of tools to centralize translation of many different file formats using GNU gettext-compatible PO files.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.51.0-gcccore-13.2.0 |
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| 0.51.0-gcccore-12.3.0 |
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| 0.51.0-gcccore-12.2.0 |
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| 0.51.0-gcccore-11.3.0 |
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| 0.51.0-gcccore-11.2.0 |
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| 0.51.0-gcccore-10.3.0 |
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| 0.51.0-gcccore-10.2.0 |
|
| 0.51.0-gcccore-9.3.0 |
|
| 0.51.0-gcccore-8.3.0 |
|
| 0.51.0-20250610 |
|
| 0.51.0 |
|
inversion
No description available
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.0 |
|
iomkl
Intel Cluster Toolchain Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MKL & OpenMPI.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2023a |
|
| 2021b |
|
| 2021a |
|
| 2020b |
|
iompi
Intel Cluster Toolchain Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MKL & OpenMPI.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2023a |
|
| 2021b |
|
| 2021a |
|
| 2020b |
|
iphop
iPHoP stands for integrated Phage Host Prediction. It is an automated command-line pipeline for predicting host genus of novel bacteriophages and archaeoviruses based on their genome sequences.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.3.3 |
|
| 1.3.2 |
|
ipp
Intel Integrated Performance Primitives (Intel IPP) is an extensive library of multicore-ready, highly optimized software functions for multimedia, data processing, and communications applications. Intel IPP offers thousands of optimized functions covering frequently used fundamental algorithms.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2021.7.0 |
|
ipython
IPython provides a rich architecture for interactive computing with: Powerful interactive shells (terminal and Qt-based). A browser-based notebook with support for code, text, mathematical expressions, inline plots and other rich media. Support for interactive data visualization and use of GUI toolkits. Flexible, embeddable interpreters to load into your own projects. Easy to use, high performance tools for parallel computing.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 9.4.0-gcccore-14.3.0 |
|
| 8.17.2-gcccore-13.2.0 |
|
| 8.14.0-gcccore-12.3.0 |
|
| 8.5.0-gcccore-11.3.0 |
|
| 7.26.0-gcccore-11.2.0 |
|
| 7.25.0-gcccore-10.3.0 |
|
| 7.18.1-gcccore-10.2.0 |
|
iq-tree
Efficient phylogenomic software by maximum likelihood
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.3.4-iompi-2023a |
|
isa-l
Intelligent Storage Acceleration Library
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.30.0-gcccore-11.2.0 |
|
isight
Finite Element Analysis software for modeling, visualization and best-in-class implicit and explicit dynamics FEA.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2025 |
|
| 2024 |
|
isl
isl is a library for manipulating sets and relations of integer points bounded by linear constraints.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.24-gcccore-11.2.0 |
|
| 0.23-gcccore-10.3.0 |
|
itac
The Intel Trace Collector is a low-overhead tracing library that performs event-based tracing in applications. The Intel Trace Analyzer provides a convenient way to monitor application activities gathered by the Intel Trace Collector through graphical displays.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2021.8.0 |
|
jansson
Jansson is a C library for encoding, decoding and manipulating JSON data. Its main features and design principles are: * Simple and intuitive API and data model * Comprehensive documentation * No dependencies on other libraries * Full Unicode support (UTF-8) * Extensive test suite
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.13.1-gcc-11.2.0 |
|
jasper
The JasPer Project is an open-source initiative to provide a free software-based reference implementation of the codec specified in the JPEG-2000 Part-1 standard.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.0.0-gcccore-12.3.0 |
|
| 2.0.33-gcccore-11.3.0 |
|
| 2.0.33-gcccore-11.2.0 |
|
| 2.0.28-gcccore-10.3.0 |
|
| 2.0.24-gcccore-10.2.0 |
|
| 2.0.14-gcccore-8.3.0 |
|
java
Java Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 17.0.4 |
|
| 17.0.2 |
|
| 13.0.2 |
|
| 11.0.2 |
|
jax
Composable transformations of Python+NumPy programs: differentiate, vectorize, JIT to GPU/TPU, and more
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.2.24-foss-2021a |
|
jbigkit
JBIG-KIT is a software implementation of the JBIG1 data compression standard (ITU-T T.82), which was designed for bi-level image data, such as scanned documents.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.1-gcccore-13.2.0 |
|
| 2.1-gcccore-12.3.0 |
|
| 2.1-gcccore-12.2.0 |
|
| 2.1-gcccore-11.3.0 |
|
| 2.1-gcccore-11.2.0 |
|
| 2.1-gcccore-10.2.0 |
|
| 2.1 |
|
jdftx
JDFTx is a plane-wave density-functional theory (DFT) code designed to be as easy to develop with as it is easy to use.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.7.0-foss-2021b-mkl |
|
| 1.7.0-foss-2021b |
|
jedi
Jedi - an awesome autocompletion, static analysis and refactoring library for Python.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.19.2-gcccore-14.3.0 |
|
| 0.19.1-gcccore-13.2.0 |
|
jellyfish
Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.3.0-gcc-11.2.0 |
|
| 2.3.0-gcc-10.3.0 |
|
jemalloc
jemalloc is a general purpose malloc(3) implementation that emphasizes fragmentation avoidance and scalable concurrency support.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 5.2.1-gcccore-11.2.0 |
|
| 5.2.1-gcccore-10.3.0 |
|
jq
jq is a lightweight and flexible command-line JSON processor.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.6-gcccore-11.2.0 |
|
| 1.6 |
|
json-c
JSON-C implements a reference counting object model that allows you to easily construct JSON objects in C, output them as JSON formatted strings and parse JSON formatted strings back into the C representation of JSON objects.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.16-gcccore-12.3.0 |
|
json-fortran
JSON-Fortran: A Modern Fortran JSON API
| Versions | Environment loading command (via Lmod) |
|---|---|
| 9.0.2-gcc-12.3.0 |
|
jsoncpp
JsonCpp is a C++ library that allows manipulating JSON values, including serialization and deserialization to and from strings. It can also preserve existing comment in unserialization/serialization steps, making it a convenient format to store user input files.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.9.5-gcccore-12.3.0 |
|
| 1.9.5-gcccore-11.3.0 |
|
| 1.9.4-gcccore-11.2.0 |
|
| 1.9.4-gcccore-10.3.0 |
|
| 1.9.4-gcccore-10.2.0 |
|
judy
A C library that implements a dynamic array.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.0.5-gcccore-11.2.0 |
|
julia
Julia is a high-level, high-performance dynamic programming language for numerical computing
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.10.0-linux-x86_64 |
|
| 1.9.0-linux-x86_64 |
|
| 1.7.2-linux-x86_64 |
|
jupyter-server
The Jupyter Server provides the backend (i.e. the core services, APIs, and REST endpoints) for Jupyter web applications like Jupyter notebook, JupyterLab, and Voila.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.17.0-gcccore-14.3.0 |
|
| 2.14.0-gcccore-13.2.0 |
|
| 2.7.2-gcccore-12.3.0 |
|
| 1.21.0-gcccore-11.3.0 |
|
jupyter-server-proxy
Jupyter Server Proxy lets you run arbitrary external processes (such as RStudio, Shiny Server, Syncthing, PostgreSQL, Code Server, etc) alongside your notebook server and provide authenticated web access to them using a path like /rstudio next to others like /lab. Alongside the python package that provides the main functionality, the JupyterLab extension (@jupyterlab/server-proxy) provides buttons in the JupyterLab launcher window to get to RStudio for example.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.1.2-gcccore-13.2.0 |
|
| 4.1.2-gcccore-12.3.0 |
|
jupyterhub
JupyterHub is a multiuser version of the Jupyter (IPython) notebook designed for centralized deployments in companies, university classrooms and research labs.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.1.5-gcccore-13.2.0 |
|
| 4.0.2-gcccore-12.3.0 |
|
jupyterlab
JupyterLab is the next-generation user interface for Project Jupyter offering all the familiar building blocks of the classic Jupyter Notebook (notebook, terminal, text editor, file browser, rich outputs, etc.) in a flexible and powerful user interface. JupyterLab will eventually replace the classic Jupyter Notebook.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.4.9-gcccore-14.3.0 |
|
| 4.2.0-gcccore-13.2.0 |
|
| 4.0.5-gcccore-12.3.0 |
|
| 3.5.0-gcccore-11.3.0 |
|
| 3.2.8-gcccore-10.3.0 |
|
| 3.1.6-gcccore-11.2.0 |
|
| 2.2.8-gcccore-10.2.0 |
|
jupyterlab_nvdashboard
NVDashboard is a JupyterLab extension for displaying GPU usage dashboards. It enables JupyterLab users to visualize system hardware metrics within the same interactive environment they use for development. Supported metrics include: GPU-compute utilization, GPU-memory consumption, PCIe throughput and NVLink throughput
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.11.0-gcccore-13.2.0 |
|
jupyterlmod
Jupyter interactive notebook server extension that allows users to interact with environment modules before launching kernels. The extension uses Lmod's Python interface to accomplish module-related tasks like loading, unloading, saving collections, etc.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 5.2.1-gcccore-13.2.0 |
|
jupyternotebook
The Jupyter Notebook is the original web application for creating and sharing computational documents. It offers a simple, streamlined, document-centric experience.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 7.2.0-gcccore-13.2.0 |
|
kahip
The graph partitioning framework KaHIP -- Karlsruhe High Quality Partitioning.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.16-gompi-2023a |
|
| 3.14-gompi-2022a |
|
kaldi
Kaldi Speech Recognition Toolkit
| Versions | Environment loading command (via Lmod) |
|---|---|
| 5.5-21ae411-cuda-11.6.0 |
|
| 5.5-21ae411 |
|
kallisto
kallisto is a program for quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.48.0-gompi-2021b |
|
| 0.46.2-foss-2021a |
|
kat
The K-mer Analysis Toolkit (KAT) contains a number of tools that analyse and compare K-mer spectra.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.4.2-foss-2019b-python-3.7.4 |
|
kbproto
X.org KBProto protocol headers.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.0.7-foss-2023a |
|
| 1.0.7-foss-2021b |
|
krakenuniq
Kraken is a system for assigning taxonomic labels to short DNA sequences, usually obtained through metagenomic studies. Previous attempts by other bioinformatics software to accomplish this task have often used sequence alignment or machine learning techniques that were quite slow, leading to the development of less sensitive but much faster abundance estimation programs. Kraken aims to achieve high sensitivity and high speed by utilizing exact alignments of k-mers and a novel classification algorithm.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.0.4-gompi-2021b |
|
| 1.0.4 |
|
kronatools
Krona Tools is a set of scripts to create Krona charts from several Bioinformatics tools as well as from text and XML files.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.8.1-gcccore-11.2.0 |
|
lame
LAME is a high quality MPEG Audio Layer III (MP3) encoder licensed under the LGPL.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.100-gcccore-12.3.0 |
|
| 3.100-gcccore-11.3.0 |
|
| 3.100-gcccore-11.2.0 |
|
| 3.100-gcccore-10.3.0 |
|
| 3.100-gcccore-10.2.0 |
|
lammps
LAMMPS Molecular Dynamics Simulator
| Versions | Environment loading command (via Lmod) |
|---|---|
| 31aug2021-intel-2021a |
|
| 30jul2021-intel-2021b |
|
| 30jul2021-intel-2021a-cuda-11.6.0 |
|
| 30jul2021-intel-2021a |
|
| 29aug2024-mace |
|
| 29aug2024-intel-2021b |
|
| 28mar2023-intel-2021b-update1 |
|
| 24mar2022-intel-2021b |
|
| 23jun2022-intel-2021b-update4-smallbig |
|
| 23jun2022-intel-2021b-update4 |
|
| 23jun2022-intel-2021b |
|
| 22jul2025_update1-intel-2021b |
|
| 2aug2023-intel-2021b-update2-nep |
|
| 2aug2023-intel-2021b-update2-mlip |
|
| 2aug2023-intel-2021b-update2-deepmd |
|
| 2aug2023-intel-2021b |
|
| 2aug2023-foss-2021b-cuda-11.6.0 |
|
lastools
Software for efficient LiDAR processing (with LASzip
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.0.2-gcccore-11.2.0 |
|
laszip
Software for efficient LiDAR processing (with LASzip
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.4.3-gcccore-11.2.0 |
|
lerc
LERC is an open-source image or raster format which supports rapid encoding and decoding for any pixel type (not just RGB or Byte). Users set the maximum compression error per pixel while encoding, so the precision of the original input image is preserved (within user defined error bounds).
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.0.0-gcccore-12.3.0 |
|
libafterimage
libAfterImage is a generic image manipulation library. It was initially implemented to address AfterStep Window Manager's needs for image handling, but it evolved into extremely powerful and flexible software, suitable for virtually any project that has needs for loading, manipulating, displaying images, as well as writing images in files.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.20-foss-2021b |
|
libaio
Asynchronous input/output library that uses the kernels native interface.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.3.112-gcccore-11.2.0 |
|
libarchive
Multi-format archive and compression library
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.8.1-gcccore-14.3.0 |
|
| 3.7.4-gcccore-13.3.0 |
|
| 3.7.4-gcccore-13.2.0 |
|
| 3.7.2-gcccore-13.2.0 |
|
| 3.6.2-gcccore-12.3.0 |
|
| 3.6.1-gcccore-12.2.0 |
|
| 3.6.1-gcccore-11.3.0 |
|
| 3.6.1 |
|
| 3.5.1-gcccore-11.2.0 |
|
| 3.5.1-gcccore-10.3.0 |
|
| 3.5.1 |
|
| 3.4.3-gcccore-11.2.0 |
|
| 3.4.3-gcccore-10.2.0 |
|
libcerf
libcerf is a self-contained numeric library that provides an efficient and accurate implementation of complex error functions, along with Dawson, Faddeeva, and Voigt functions.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.3-gcccore-12.3.0 |
|
| 2.1-gcccore-11.3.0 |
|
| 1.17-gcccore-11.2.0 |
|
| 1.17-gcccore-10.3.0 |
|
| 1.14-gcccore-10.2.0 |
|
libcint
libcint is an open source library for analytical Gaussian integrals.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 6.1.2-iimkl-2023a |
|
libcircle
An API to provide an efficient distributed queue on a cluster. libcircle is an API for distributing embarrassingly parallel workloads using self-stabilization.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.3-gompi-2021b |
|
libctl
libctl is a free Guile-based library implementing flexible control files for scientific simulations.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.5.1-gcccore-11.2.0 |
|
| 4.1.3-gcccore-11.2.0 |
|
libdap
A C++ SDK which contains an implementation of DAP 2.0 and DAP4.0. This includes both Client- and Server-side support classes.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.20.11-gcccore-12.3.0 |
|
libdeflate
Heavily optimized library for DEFLATE/zlib/gzip compression and decompression.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.19-gcccore-13.2.0 |
|
| 1.18-gcccore-12.3.0 |
|
| 1.15-gcccore-12.2.0 |
|
| 1.15 |
|
| 1.10-gcccore-11.3.0 |
|
| 1.8-gcccore-11.2.0 |
|
libdrm
Direct Rendering Manager runtime library.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.4.115-gcccore-12.3.0 |
|
| 2.4.110-gcccore-11.3.0 |
|
| 2.4.107-gcccore-11.2.0-old_libpng |
|
| 2.4.107-gcccore-11.2.0 |
|
| 2.4.107 |
|
| 2.4.106-gcccore-10.3.0 |
|
| 2.4.102-gcccore-10.2.0 |
|
| 2.4.100-gcccore-9.3.0 |
|
| 2.4.99-gcccore-8.3.0 |
|
libdwarf
The DWARF Debugging Information Format is of interest to programmers working on compilers and debuggers (and anyone interested in reading or writing DWARF information))
| Versions | Environment loading command (via Lmod) |
|---|---|
| 20210528-gcccore-11.2.0 |
|
libelf
libelf is a free ELF object file access library
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.8.13-gcccore-11.2.0 |
|
libepoxy
Epoxy is a library for handling OpenGL function pointer management for you
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.5.10-gcccore-12.3.0 |
|
| 1.5.8-gcccore-11.2.0 |
|
| 1.5.8-gcccore-10.3.0 |
|
| 1.5.8 |
|
| 1.5.4-gcccore-10.2.0 |
|
libev
A full-featured and high-performance (see benchmark) event loop that is loosely modelled after libevent, but without its limitations and bugs. It is used in GNU Virtual Private Ethernet, rxvt-unicode, auditd, the Deliantra MORPG Server and Client, and many other programs.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.33-gcc-11.2.0 |
|
libevent
The libevent API provides a mechanism to execute a callback function when a specific event occurs on a file descriptor or after a timeout has been reached. Furthermore, libevent also support callbacks due to signals or regular timeouts.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.1.12-gcccore-13.3.0 |
|
| 2.1.12-gcccore-13.2.0 |
|
| 2.1.12-gcccore-12.3.0 |
|
| 2.1.12-gcccore-12.2.0 |
|
| 2.1.12-gcccore-11.3.0 |
|
| 2.1.12-gcccore-11.2.0 |
|
| 2.1.12-gcccore-10.3.0 |
|
| 2.1.12-gcccore-10.2.0 |
|
| 2.1.12 |
|
libfabric
Libfabric is a core component of OFI. It is the library that defines and exports the user-space API of OFI, and is typically the only software that applications deal with directly. It works in conjunction with provider libraries, which are often integrated directly into libfabric.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.21.0-gcccore-13.3.0 |
|
| 1.19.0-gcccore-13.2.0 |
|
| 1.18.0-gcccore-12.3.0 |
|
| 1.16.1-gcccore-12.2.0 |
|
| 1.15.1-gcccore-11.3.0 |
|
| 1.13.2-gcccore-11.2.0 |
|
| 1.13.2 |
|
| 1.13.0-gcccore-11.2.0 |
|
| 1.12.1-gcccore-10.3.0 |
|
| 1.11.0-gcccore-10.2.0 |
|
libfdf
LibFDF is the official implementation of the FDF specifications for use in client codes.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.5.1-gcc-12.3.0 |
|
libffcall
GNU Libffcall is a collection of four libraries which can be used to build foreign function call interfaces in embedded interpreters
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.5 |
|
libffi
The libffi library provides a portable, high level programming interface to various calling conventions. This allows a programmer to call any function specified by a call interface description at run-time.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.5.1-gcccore-14.3.0 |
|
| 3.4.5-gcccore-13.3.0 |
|
| 3.4.4-gcccore-13.2.0 |
|
| 3.4.4-gcccore-12.3.0 |
|
| 3.4.4-gcccore-12.2.0 |
|
| 3.4.4 |
|
| 3.4.2-gcccore-11.3.0 |
|
| 3.4.2-gcccore-11.2.0 |
|
| 3.4.2 |
|
| 3.3-gcccore-10.3.0 |
|
| 3.3-gcccore-10.2.0 |
|
| 3.3-gcccore-9.3.0 |
|
| 3.2.1-gcccore-8.3.0 |
|
| 3.2.1-gcccore-8.2.0 |
|
libflame
libFLAME is a portable library for dense matrix computations, providing much of the functionality present in LAPACK.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 5.2.0-gcccore-10.2.0 |
|
libgcrypt
Libgcrypt is a general purpose cryptographic library originally based on code from GnuPG
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.9.3-gcccore-11.2.0 |
|
| 1.9.3 |
|
| 1.9.2-gcccore-10.3.0 |
|
libgd
GD is an open source code library for the dynamic creation of images by programmers.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.3.3-gcccore-12.3.0 |
|
| 2.3.3-gcccore-11.3.0 |
|
| 2.3.3-gcccore-11.2.0 |
|
| 2.3.1-gcccore-10.3.0 |
|
| 2.3.0-gcccore-10.2.0 |
|
libgdsii
libGDSII is a C++ library for working with GDSII binary data files, intended primarily for use with the computational electromagnetism codes scuff-em and meep but sufficiently general-purpose to allow other uses as well.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.21-gcccore-11.2.0 |
|
libgeotiff
Library for reading and writing coordinate system information from/to GeoTIFF files
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.7.1-gcccore-12.3.0 |
|
| 1.7.0-gcccore-11.2.0 |
|
| 1.6.0-gcccore-10.3.0 |
|
| 1.6.0-gcccore-10.2.0 |
|
libgit2
libgit2 is a portable, pure C implementation of the Git core methods provided as a re-entrant linkable library with a solid API, allowing you to write native speed custom Git applications in any language which supports C bindings.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.7.1-gcccore-12.3.0 |
|
| 1.4.3-gcccore-11.3.0 |
|
| 1.1.1-gcccore-11.2.0 |
|
| 1.1.0-gcccore-10.3.0 |
|
libglu
The OpenGL Utility Library (GLU) is a computer graphics library for OpenGL.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 9.0.3-gcccore-12.3.0 |
|
| 9.0.2-gcccore-11.3.0 |
|
| 9.0.2-gcccore-11.2.0-old_libpng |
|
| 9.0.2-gcccore-11.2.0 |
|
| 9.0.2 |
|
| 9.0.1-gcccore-10.3.0 |
|
| 9.0.1-gcccore-10.2.0 |
|
| 9.0.1-gcccore-9.3.0 |
|
libglvnd
libglvnd is a vendor-neutral dispatch layer for arbitrating OpenGL API calls between multiple vendors.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.6.0-gcccore-12.3.0 |
|
| 1.4.0-gcccore-11.3.0 |
|
| 1.3.3-gcccore-11.2.0-old_libpng |
|
| 1.3.3-gcccore-11.2.0 |
|
| 1.3.3-gcccore-10.3.0 |
|
| 1.3.3 |
|
| 1.3.2-gcccore-10.2.0 |
|
| 1.2.0-gcccore-9.3.0 |
|
libgpg-error
Libgpg-error is a small library that defines common error values for all GnuPG components.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.42-gcccore-11.2.0 |
|
| 1.42-gcccore-10.3.0 |
|
| 1.42 |
|
libgridxc
A library to compute the exchange and correlation energy and potential in spherical (i.e. atoms) or periodic systems.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.0.2-gompi-2023a |
|
| 2.0.1-iimpi-2021b |
|
| 0.9.6-iimpi-2021b |
|
libharu
libHaru is a free, cross platform, open source library for generating PDF files.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.3.0-gcccore-11.2.0 |
|
libice
X Inter-Client Exchange library for freedesktop.org
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.0.9-foss-2023a |
|
| 1.0.9-foss-2021b |
|
libiconv
Libiconv converts from one character encoding to another through Unicode conversion
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.18-gcccore-14.3.0 |
|
| 1.17-gcccore-13.2.0 |
|
| 1.17-gcccore-12.3.0 |
|
| 1.17-gcccore-12.2.0 |
|
| 1.17-gcccore-11.3.0 |
|
| 1.17 |
|
| 1.16-gcccore-11.2.0 |
|
| 1.16-gcccore-10.3.0 |
|
| 1.16-gcccore-10.2.0 |
|
| 1.16-gcccore-8.3.0 |
|
libidn
GNU Libidn is a fully documented implementation of the Stringprep, Punycode and IDNA specifications. Libidn's purpose is to encode and decode internationalized domain names.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.38-gcccore-11.2.0 |
|
| 1.38 |
|
| 1.36-gcccore-10.3.0 |
|
| 1.34-gcccore-10.3.0 |
|
libidn2
Libidn2 implements the revised algorithm for internationalized domain names called IDNA2008/TR46.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.3.8-gcccore-14.3.0 |
|
| 2.3.2-gcccore-11.2.0 |
|
libint
Libint library is used to evaluate the traditional (electron repulsion) and certain novel two-body matrix elements (integrals) over Cartesian Gaussian functions used in modern atomic and molecular theory.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 9f12ee6-gcc-12.3.0-lmax-10 |
|
| 2.9.0-gcc-12.3.0-lmax-8-psi4-fedora |
|
| 2.7.2-gompi-2021b-lmax-6-cp2k |
|
| 2.7.2-gcc-12.3.0-lmax-10 |
|
| 2.7.2-gcc-12.3.0-lmax-6-cp2k |
|
| 2.7.2-gcc-11.3.0-lmax-6-cp2k |
|
| 2.6.0-iimpi-2021a-lmax-6-cp2k |
|
| 2.6.0-iccifort-2020.4.304-lmax-6-cp2k |
|
| 2.6.0-gompi-2021b-lmax-6-cp2k |
|
| 2.6.0-gcc-10.3.0-lmax-6-cp2k |
|
| 1.1.6-intel-2020a |
|
libjpeg-turbo
libjpeg-turbo is a fork of the original IJG libjpeg which uses SIMD to accelerate baseline JPEG compression and decompression. libjpeg is a library that implements JPEG image encoding, decoding and transcoding.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.0.1-gcccore-13.2.0 |
|
| 2.1.5.1-gcccore-12.3.0 |
|
| 2.1.4-gcccore-12.2.0 |
|
| 2.1.4 |
|
| 2.1.3-gcccore-11.3.0 |
|
| 2.0.6-gcccore-11.2.0 |
|
| 2.0.6-gcccore-10.3.0 |
|
| 2.0.6 |
|
| 2.0.5-gcccore-10.2.0 |
|
| 2.0.4-gcccore-9.3.0 |
|
| 2.0.3-gcccore-8.3.0 |
|
libmad
MAD is a high-quality MPEG audio decoder.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.15.1b-gcccore-12.3.0 |
|
| 0.15.1b-gcccore-11.3.0 |
|
libmatheval
GNU libmatheval is a library (callable from C and Fortran) to parse and evaluate symbolic expressions input as text.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.1.11-gcccore-9.3.0 |
|
libmicrohttpd
GNU libmicrohttpd is a small C library that is supposed to make it easy to run an HTTP server as part of another application.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.9.73-gcccore-11.2.0 |
|
libnsl
The libnsl package contains the public client interface for NIS(YP).
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.3.0-gcccore-11.2.0 |
|
| 1.3.0-gcccore-10.3.0 |
|
libogg
Ogg is a multimedia container format, and the native file and stream format for the Xiph.org multimedia codecs.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.3.5-gcccore-12.3.0 |
|
| 1.3.5-gcccore-11.3.0 |
|
| 1.3.5-gcccore-11.2.0 |
|
| 1.3.4-gcccore-10.3.0 |
|
| 1.3.4-gcccore-10.2.0 |
|
libopus
Opus is a totally open, royalty-free, highly versatile audio codec. Opus is unmatched for interactive speech and music transmission over the Internet, but is also intended for storage and streaming applications. It is standardized by the Internet Engineering Task Force (IETF) as RFC 6716 which incorporated technology from Skype’s SILK codec and Xiph.Org’s CELT codec.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.3.1-gcccore-11.3.0 |
|
libpciaccess
Generic PCI access library.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.18.1-gcccore-13.3.0 |
|
| 0.17-gcccore-13.2.0 |
|
| 0.17-gcccore-12.3.0 |
|
| 0.17-gcccore-12.2.0 |
|
| 0.17 |
|
| 0.16-gcccore-11.3.0 |
|
| 0.16-gcccore-11.2.0 |
|
| 0.16-gcccore-10.3.0 |
|
| 0.16-gcccore-10.2.0 |
|
| 0.16-gcccore-9.3.0 |
|
| 0.16 |
|
| 0.14-gcccore-8.3.0 |
|
| 0.14-gcccore-7.3.0 |
|
libpng
libpng is the official PNG reference library
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.6.40-gcccore-13.2.0 |
|
| 1.6.39-gcccore-12.3.0 |
|
| 1.6.38-gcccore-12.2.0 |
|
| 1.6.38 |
|
| 1.6.37-gcccore-11.3.0 |
|
| 1.6.37-gcccore-11.2.0 |
|
| 1.6.37-gcccore-10.3.0 |
|
| 1.6.37-gcccore-10.2.0 |
|
| 1.6.37-gcccore-9.3.0 |
|
| 1.6.37-gcccore-8.3.0 |
|
| 1.6.37 |
|
| 1.6.36-gcccore-8.2.0 |
|
| 1.5.30 |
|
| 1.4.22-gcccore-11.2.0 |
|
| 1.2.59 |
|
libpsl
C library for the Public Suffix List
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.21.5-gcccore-14.3.0 |
|
| 0.21.1-gcccore-11.2.0 |
|
| 0.21.1-gcccore-10.3.0 |
|
libpsml
A library to handle pseudopotentials in PSML format
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.1.0-gcc-12.3.0 |
|
libpthread-stubs
The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, latency hiding, direct access to the protocol, improved threading support, and extensibility.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.3-foss-2023a |
|
| 0.3-foss-2021b |
|
libreadline
The GNU Readline library provides a set of functions for use by applications that allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. The Readline library includes additional functions to maintain a list of previously-entered command lines, to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 8.2-gcccore-14.3.0 |
|
| 8.2-gcccore-13.3.0 |
|
| 8.2-gcccore-13.2.0 |
|
| 8.2-gcccore-12.3.0 |
|
| 8.2-gcccore-12.2.0 |
|
| 8.2 |
|
| 8.1.2-gcccore-11.3.0 |
|
| 8.1-gcccore-11.2.0 |
|
| 8.1-gcccore-10.3.0 |
|
| 8.1 |
|
| 8.0-gcccore-11.2.0 |
|
| 8.0-gcccore-10.2.0 |
|
| 8.0-gcccore-9.3.0 |
|
| 8.0-gcccore-8.3.0 |
|
| 8.0-gcccore-8.2.0 |
|
| 6.3 |
|
librttopo
The RT Topology Library exposes an API to create and manage standard (ISO 13249 aka SQL/MM) topologies using user-provided data stores.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.1.0-gcc-11.2.0 |
|
libsigc++
The libsigc++ package implements a typesafe callback system for standard C++.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.10.8-gcccore-10.3.0 |
|
libsigsegv
GNU libsigsegv is a library for handling page faults in user mode.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.14 |
|
libsm
X11 Session Management library, which allows for applications to both manage sessions, and make use of session managers to save and restore their state for later use.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.2.2-foss-2023a |
|
| 1.2.2-foss-2021b |
|
libsndfile
Libsndfile is a C library for reading and writing files containing sampled sound (such as MS Windows WAV and the Apple/SGI AIFF format) through one standard library interface.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.1.0-gcccore-11.3.0 |
|
| 1.0.31-gcccore-11.2.0 |
|
| 1.0.31-gcccore-10.3.0 |
|
| 1.0.28-gcccore-10.2.0 |
|
libsodium
Sodium is a modern, easy-to-use software library for encryption, decryption, signatures, password hashing and more.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.0.20-gcccore-14.3.0 |
|
| 1.0.19-gcccore-13.2.0 |
|
| 1.0.18-gcccore-12.3.0 |
|
| 1.0.18-gcccore-11.3.0 |
|
| 1.0.18-gcccore-11.2.0 |
|
| 1.0.18-gcccore-10.3.0 |
|
| 1.0.18-gcccore-10.2.0 |
|
libsoup
libsoup is an HTTP client/server library for GNOME. It uses GObjects and the glib main loop, to integrate well with GNOME applications, and also has a synchronous API, for use in threaded applications.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.0.7-gcc-11.2.0 |
|
| 2.74.0-gcccore-10.3.0 |
|
libspatialindex
C++ implementation of R*-tree, an MVR-tree and a TPR-tree with C API
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.9.3-gcccore-11.2.0 |
|
libspatialite
SpatiaLite is an open source library intended to extend the SQLite core to support fully fledged Spatial SQL capabilities.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 5.0.1-gcc-11.2.0 |
|
libsvm
LIBSVM is an integrated software for support vector classification, (C-SVC, nu-SVC), regression (epsilon-SVR, nu-SVR) and distribution estimation (one-class SVM). It supports multi-class classification.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.36 |
|
libtasn1
Libtasn1 is the ASN.1 library used by GnuTLS, GNU Shishi and some other packages. It was written by Fabio Fiorina, and has been shipped as part of GnuTLS for some time but is now a proper GNU package.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.18.0-gcccore-11.2.0 |
|
| 4.18.0 |
|
| 4.17.0-gcccore-10.3.0 |
|
libtiff
tiff: Library and tools for reading and writing TIFF data files
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.6.0-gcccore-13.2.0 |
|
| 4.5.0-gcccore-12.3.0 |
|
| 4.4.0-gcccore-12.2.0 |
|
| 4.4.0 |
|
| 4.3.0-gcccore-11.3.0 |
|
| 4.3.0-gcccore-11.2.0 |
|
| 4.3.0 |
|
| 4.2.0-gcccore-10.3.0 |
|
| 4.1.0-gcccore-10.2.0 |
|
| 4.1.0-gcccore-9.3.0 |
|
| 4.1.0-gcccore-8.3.0 |
|
libtirpc
Libtirpc is a port of Suns Transport-Independent RPC library to Linux.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.3.3-gcccore-12.3.0 |
|
| 1.3.2-gcccore-11.2.0 |
|
| 1.3.2-gcccore-10.3.0 |
|
| 1.3.1-gcccore-10.2.0 |
|
libtommath
LibTomMath is a free open source portable number theoretic multiple-precision integer (MPI) library written entirely in C.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.3.0-gcccore-14.3.0 |
|
libtool
GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries behind a consistent, portable interface.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.5.4-gcccore-14.3.0 |
|
| 2.4.7-gcccore-13.3.0 |
|
| 2.4.7-gcccore-13.2.0 |
|
| 2.4.7-gcccore-12.3.0 |
|
| 2.4.7-gcccore-12.2.0 |
|
| 2.4.7-gcccore-11.3.0 |
|
| 2.4.7 |
|
| 2.4.6-gcccore-11.2.0 |
|
| 2.4.6-gcccore-10.3.0 |
|
| 2.4.6-gcccore-10.2.0 |
|
| 2.4.6-gcccore-9.3.0 |
|
| 2.4.6-gcccore-8.3.0 |
|
| 2.4.6-gcccore-8.2.0 |
|
| 2.4.6-gcccore-7.3.0 |
|
| 2.4.6 |
|
libunistring
This library provides functions for manipulating Unicode strings and for manipulating C strings according to the Unicode standard.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.3-gcccore-14.3.0 |
|
| 1.0-gcccore-11.2.0 |
|
| 1.0 |
|
| 0.9.10-gcccore-10.3.0 |
|
| 0.9.10-gcccore-9.3.0 |
|
libunwind
The primary goal of libunwind is to define a portable and efficient C programming interface (API) to determine the call-chain of a program. The API additionally provides the means to manipulate the preserved (callee-saved) state of each call-frame and to resume execution at any point in the call-chain (non-local goto). The API supports both local (same-process) and remote (across-process) operation. As such, the API is useful in a number of applications
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.6.2-gcccore-12.3.0 |
|
| 1.6.2-gcccore-11.3.0 |
|
| 1.5.0-gcccore-11.2.0 |
|
| 1.5.0 |
|
| 1.4.0-gcccore-10.3.0 |
|
| 1.4.0-gcccore-10.2.0 |
|
| 1.3.1-gcccore-9.3.0 |
|
| 1.3.1-gcccore-8.3.0 |
|
libvdwxc
libvdwxc is a general library for evaluating energy and potential for exchange-correlation (XC) functionals from the vdW-DF family that can be used with various of density functional theory (DFT) codes.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.4.0-foss-2021a |
|
libvmaf
VMAF is an Emmy-winning perceptual video quality assessment algorithm developed by Netflix.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.3.1-gcccore-11.3.0 |
|
libvorbis
Ogg Vorbis is a fully open, non-proprietary, patent-and-royalty-free, general-purpose compressed audio format
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.3.7-gcccore-12.3.0 |
|
| 1.3.7-gcccore-11.3.0 |
|
| 1.3.7-gcccore-11.2.0 |
|
| 1.3.7-gcccore-10.3.0 |
|
| 1.3.7-gcccore-10.2.0 |
|
libwebp
WebP is a modern image format that provides superior lossless and lossy compression for images on the web. Using WebP, webmasters and web developers can create smaller, richer images that make the web faster.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.3.2-gcccore-13.2.0 |
|
| 1.3.1-gcccore-12.3.0 |
|
| 1.2.0-gcccore-11.2.0 |
|
| 1.2.0-gcccore-10.3.0 |
|
| 1.1.0-gcccore-10.2.0 |
|
libwpe
WPE is the reference WebKit port for embedded and low-consumption computer devices. It has been designed from the ground-up with performance, small footprint, accelerated content rendering, and simplicity of deployment in mind, bringing the excellence of the WebKit engine to countless platforms and target devices.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.13.3-gcccore-11.2.0 |
|
libx11
X11 client-side library
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.8-foss-2023a |
|
| 1.8-foss-2021b |
|
libxau
The libXau package contains a library implementing the X11 Authorization Protocol. This is useful for restricting client access to the display.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.0.8-foss-2023a |
|
| 1.0.8-foss-2021b |
|
libxc
Libxc is a library of exchange-correlation functionals for density-functional theory. The aim is to provide a portable, well tested and reliable set of exchange and correlation functionals.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 6.2.2-intel-compilers-2023.2.1 |
|
| 6.2.2-gcc-12.3.0 |
|
| 6.1.0-intel-compilers-2022.2.1 |
|
| 5.1.6-intel-compilers-2023.1.0 |
|
| 5.1.6-intel-compilers-2021.4.0 |
|
| 5.1.6-gcc-12.3.0 |
|
| 5.1.6-gcc-11.2.0 |
|
| 5.1.5-intel-compilers-2021.2.0 |
|
| 5.1.5-gcc-10.3.0 |
|
| 5.1.3-gcc-12.3.0-8 |
|
| 5.1.2-iccifort-2020.4.304 |
|
| 4.3.4-intel-compilers-2021.4.0 |
|
| 4.3.4-intel-compilers-2021.2.0 |
|
| 4.3.4-iccifort-2020.4.304 |
|
| 4.3.4-iccifort-2020.1.217 |
|
| 4.3.4-iccifort-2019.5.281 |
|
| 4.3.4-gcc-11.2.0 |
|
| 4.3.4-gcc-10.2.0 |
|
| 4.2.3-foss-2019b |
|
libxcb
The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, latency hiding, direct access to the protocol, improved threading support, and extensibility.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.16.1-foss-2023a |
|
| 1.16.1-foss-2021b |
|
libxdmcp
The libXdmcp package contains a library implementing the X Display Manager Control Protocol. This is useful for allowing clients to interact with the X Display Manager.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.1.2-foss-2023a |
|
| 1.1.2-foss-2021b |
|
libxml++
libxml++ is a C++ wrapper for the libxml XML parser library.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.42.1-gcc-10.3.0 |
|
libxml2
Libxml2 is the XML C parser and toolchain developed for the Gnome project (but usable outside of the Gnome platform).
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.14.3-gcccore-14.3.0 |
|
| 2.12.7-gcccore-13.3.0 |
|
| 2.11.5-gcccore-13.2.0 |
|
| 2.11.4-gcccore-12.3.0 |
|
| 2.10.3-gcccore-12.2.0 |
|
| 2.9.13-gcccore-11.3.0 |
|
| 2.9.10-gcccore-11.2.0 |
|
| 2.9.10-gcccore-10.3.0 |
|
| 2.9.10-gcccore-10.2.0 |
|
| 2.9.10-gcccore-9.3.0 |
|
| 2.9.10 |
|
| 2.9.9-gcccore-8.3.0 |
|
| 2.9.8-gcccore-7.3.0 |
|
libxslt
Libxslt is the XSLT C library developed for the GNOME project (but usable outside of the Gnome platform).
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.1.43-gcccore-14.3.0 |
|
| 1.1.38-gcccore-13.2.0 |
|
| 1.1.38-gcccore-12.3.0 |
|
| 1.1.34-gcccore-11.3.0 |
|
| 1.1.34-gcccore-11.2.0 |
|
| 1.1.34-gcccore-10.3.0 |
|
libxsmm
LIBXSMM is a library for small dense and small sparse matrix-matrix multiplications targeting Intel Architecture (x86).
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.17-gcc-11.2.0 |
|
| 1.16.2-intel-compilers-2021.2.0 |
|
| 1.16.2-gcc-10.3.0 |
|
| 1.16.1-iccifort-2020.4.304 |
|
| 1.16.1-iccifort-2020.1.217 |
|
libxt
libXt provides the X Toolkit Intrinsics, an abstract widget library upon which other toolkits are based. Xt is the basis for many toolkits, including the Athena widgets (Xaw), and LessTif (a Motif implementation).
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.3.0-foss-2023a |
|
| 1.3.0-foss-2021b |
|
libyaml
LibYAML is a YAML parser and emitter written in C.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.2.5-gcccore-14.3.0 |
|
| 0.2.5-gcccore-13.2.0 |
|
| 0.2.5-gcccore-12.3.0 |
|
| 0.2.5-gcccore-11.2.0 |
|
| 0.2.5-gcccore-10.3.0 |
|
| 0.2.5-gcccore-10.2.0 |
|
libzip
libzip is a C library for reading, creating, and modifying zip archives.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.7.3-gcccore-11.2.0 |
|
linaro-forge
Linaro Forge combines Linaro DDT, the leading debugger for time-saving high performance application debugging, Linaro MAP, the trusted performance profiler for invaluable optimization advice across native and Python HPC codes, and Linaro Performance Reports for advanced reporting capabilities.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 23.0.4 |
|
lit
lit is a portable tool for executing LLVM and Clang style test suites, summarizing their results, and providing indication of failures.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 18.1.8-gcccore-13.3.0 |
|
littlecms
Little CMS intends to be an OPEN SOURCE small-footprint color management engine, with special focus on accuracy and performance.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.15-gcccore-13.2.0 |
|
| 2.15-gcccore-12.3.0 |
|
| 2.13.1-gcccore-11.3.0 |
|
| 2.12-gcccore-11.2.0 |
|
| 2.12-gcccore-10.3.0 |
|
| 2.11-gcccore-10.2.0 |
|
llvm
The LLVM Core libraries provide a modern source- and target-independent optimizer, along with code generation support for many popular CPUs (as well as some less common ones!) These libraries are built around a well specified code representation known as the LLVM intermediate representation ("LLVM IR
| Versions | Environment loading command (via Lmod) |
|---|---|
| 16.0.6-gcccore-12.3.0 |
|
| 14.0.3-gcccore-11.3.0 |
|
| 12.0.1-gcccore-11.2.0 |
|
| 12.0.1 |
|
| 11.1.0-gcccore-10.3.0 |
|
| 11.0.0-gcccore-10.2.0 |
|
| 9.0.1-gcccore-9.3.0 |
|
lmdb
LMDB is a fast, memory-efficient database. With memory-mapped files, it has the read performance of a pure in-memory database while retaining the persistence of standard disk-based databases.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.9.29-gcccore-11.3.0 |
|
| 0.9.29-gcccore-11.2.0 |
|
| 0.9.28-gcccore-10.3.0 |
|
| 0.9.24-gcccore-10.2.0 |
|
lmod
Lmod is a Lua based module system. Modules allow for dynamic modification of a user's environment under Unix systems. See www.tacc.utexas.edu/tacc-projects/lmod for a complete description. Lmod is a new implementation that easily handles the MODULEPATH Hierarchical problem. It is drop-in replacement for TCL/C modules and reads TCL modulefiles directly.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 8.5.8 |
|
| 7.3 |
|
locarna
The Vienna RNA Package consists of a C code library and several stand-alone programs for the prediction and comparison of RNA secondary structures.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.9.2.1-foss-2021b |
|
lpsolve
Mixed Integer Linear Programming (MILP) solver
| Versions | Environment loading command (via Lmod) |
|---|---|
| 5.5.2.11-gcc-11.2.0 |
|
| 5.5.2.11-gcc-10.2.0 |
|
lsd2
Least-squares methods to estimate rates and dates from phylogenies
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.4.1-gcccore-12.3.0 |
|
lua
Lua is a powerful, fast, lightweight, embeddable scripting language. Lua combines simple procedural syntax with powerful data description constructs based on associative arrays and extensible semantics. Lua is dynamically typed, runs by interpreting bytecode for a register-based virtual machine, and has automatic memory management with incremental garbage collection, making it ideal for configuration, scripting, and rapid prototyping.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 5.4.6-gcccore-12.3.0 |
|
| 5.4.4-gcccore-11.3.0 |
|
| 5.4.3-gcccore-11.2.0 |
|
| 5.4.3-gcccore-10.3.0 |
|
| 5.4.2-gcccore-10.2.0 |
|
| 5.1.4-8 |
|
lwgrp
The light-weight group library defines data structures and collective operations to group MPI processes as an ordered set. Such groups are useful as substitutes for MPI communicators when the overhead of communicator creation is too costly. For example, certain sorting algorithms recursively divide processes into subgroups as the sort algorithm progresses. These groups may be different with each invocation, so that it is inefficient to create and destroy communicators during the sort routine.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.0.3-gompi-2021b |
|
lxml
The lxml XML toolkit is a Pythonic binding for the C libraries libxml2 and libxslt.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 6.0.0-gcccore-14.3.0 |
|
| 4.9.3-gcccore-13.2.0 |
|
| 4.9.2-gcccore-12.3.0 |
|
| 4.9.1-gcccore-11.3.0 |
|
| 4.6.3-gcccore-11.2.0 |
|
lz4
LZ4 is lossless compression algorithm, providing compression speed at 400 MB/s per core. It features an extremely fast decoder, with speed in multiple GB/s per core.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.10.0-gcccore-14.3.0 |
|
| 1.9.4-gcccore-13.3.0 |
|
| 1.9.4-gcccore-13.2.0 |
|
| 1.9.4-gcccore-12.3.0 |
|
| 1.9.4-gcccore-12.2.0 |
|
| 1.9.4 |
|
| 1.9.3-gcccore-11.3.0 |
|
| 1.9.3-gcccore-11.2.0 |
|
| 1.9.3-gcccore-10.3.0 |
|
| 1.9.3 |
|
| 1.9.2-gcccore-10.2.0 |
|
| 1.9.2-gcccore-9.3.0 |
|
lzo
Portable lossless data compression library
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.10-gcccore-11.2.0 |
|
m4
GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible although it has some extensions (for example, handling more than 9 positional parameters to macros). GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.4.20-gcccore-14.3.0 |
|
| 1.4.20 |
|
| 1.4.19-gcccore-13.3.0 |
|
| 1.4.19-gcccore-13.2.0 |
|
| 1.4.19-gcccore-13.1.0 |
|
| 1.4.19-gcccore-12.3.0 |
|
| 1.4.19-gcccore-12.2.0 |
|
| 1.4.19-gcccore-11.3.0 |
|
| 1.4.19-gcccore-11.2.0 |
|
| 1.4.19 |
|
| 1.4.18-gcccore-11.2.0 |
|
| 1.4.18-gcccore-10.3.0 |
|
| 1.4.18-gcccore-10.2.0 |
|
| 1.4.18-gcccore-9.3.0 |
|
| 1.4.18-gcccore-8.3.0 |
|
| 1.4.18-gcccore-8.2.0 |
|
| 1.4.18-gcccore-7.3.0 |
|
| 1.4.18 |
|
| 1.4.17 |
|
mace-jax
MACE provides fast and accurate machine learning interatomic potentials with higher order equivariant message passing.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4b899de |
|
mace-torch
MACE provides fast and accurate machine learning interatomic potentials with higher order equivariant message passing.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.3.14 |
|
| 0.3.13 |
|
| 0.3.6 |
|
macrodensity
ASE is a python package providing an open source Atomic Simulation Environment in the Python scripting language. From version 3.20.1 we also include the ase-ext package, it contains optional reimplementations in C of functions in ASE. ASE uses it automatically when installed.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1bf513c-intel-2021b |
|
maeparser
maeparser is a parser for Schrodinger Maestro files.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.3.0-iimpi-2021b |
|
| 1.3.0-gompi-2021b |
|
| 1.3.0-gompi-2021a |
|
magma
The MAGMA project aims to develop a dense linear algebra library similar to LAPACK but for heterogeneous/hybrid architectures, starting with current Multicore+GPU systems.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.7.2-foss-2023a-cuda-12.1.1 |
|
| 2.6.1-foss-2021a-cuda-11.3.1 |
|
| 2.5.4-fosscuda-2020b |
|
make
GNU version of make utility
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.4.1-gcccore-13.3.0 |
|
| 4.4.1-gcccore-13.2.0 |
|
| 4.4.1-gcccore-12.3.0 |
|
| 4.3-gcccore-12.2.0 |
|
| 4.3-gcccore-11.2.0 |
|
| 4.3-gcccore-10.3.0 |
|
| 4.3-gcccore-10.2.0 |
|
makedepend
The makedepend package contains a C-preprocessor like utility to determine build-time dependencies.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.0.6-gcccore-11.2.0 |
|
makeinfo
makeinfo is part of the Texinfo project, the official documentation format of the GNU project.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 6.8-gcccore-11.2.0 |
|
| 6.7-gcccore-11.2.0-minimal |
|
| 6.7-gcccore-10.3.0 |
|
| 6.7-gcccore-10.2.0 |
|
| 6.7-gcccore-9.3.0 |
|
| 6.7-gcccore-8.3.0 |
|
mako
A super-fast templating language that borrows the best ideas from the existing templating languages
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.2.4-gcccore-13.2.0 |
|
| 1.2.4-gcccore-12.3.0 |
|
| 1.2.0-gcccore-11.3.0 |
|
| 1.1.4-gcccore-11.2.0 |
|
| 1.1.4-gcccore-10.3.0 |
|
| 1.1.4 |
|
| 1.1.3-gcccore-10.2.0 |
|
| 1.1.2-gcccore-9.3.0 |
|
| 1.1.0-gcccore-8.3.0 |
|
mapdamage
mapDamage2 is a computational framework written in Python and R, which tracks and quantifies DNA damage patterns among ancient DNA sequencing reads generated by Next-Generation Sequencing platforms.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.2.1-foss-2021b |
|
maple
SIMPSON
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2024.0 |
|
| 2022.2 |
|
| 2021.1 |
|
mariadb
MariaDB is an enhanced, drop-in replacement for MySQL. Included engines: myISAM, Aria, InnoDB, RocksDB, TokuDB, OQGraph, Mroonga.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 10.6.4-gcc-11.2.0 |
|
masurca
MaSuRCA is whole genome assembly software. It combines the efficiency of the de Bruijn graph and Overlap-Layout-Consensus (OLC) approaches. MaSuRCA can assemble data sets containing only short reads from Illumina sequencing or a mixture of short reads and long reads (Sanger, 454, Pacbio and Nanopore).
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.1.2-gcc-11.3.0 |
|
| 4.1.0-gcc-11.3.0 |
|
math-complex
Complex numbers and associated mathematical functions and trigonometric functions
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.59 |
|
mathematica
Mathematica is a computational software program used in many scientific, engineering, mathematical and computing fields.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 14.1 |
|
| 14.0 |
|
| 13.3.1 |
|
| 13.1.0 |
|
matio
matio is an C library for reading and writing Matlab MAT files.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.5.17-gcccore-8.3.0 |
|
| 1.5.12-gcccore-8.3.0 |
|
matlab
MATLAB: The Language of Technical Computing
| Versions | Environment loading command (via Lmod) |
|---|---|
| R2024b |
|
| R2023b |
|
| R2023a |
|
| R2022b |
|
| R2021a |
|
matplotlib
matplotlib is a python 2D plotting library which produces publication quality figures in a variety of hardcopy formats and interactive environments across platforms. matplotlib can be used in python scripts, the python and ipython shell, web application servers, and six graphical user interface toolkits.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.8.2-gfbf-2023b |
|
| 3.7.2-gfbf-2023a |
|
| 3.7.0-gfbf-2022b |
|
| 3.5.2-foss-2022a |
|
| 3.4.3-intel-2021b |
|
| 3.4.3-foss-2021b |
|
| 3.4.2-foss-2021a |
|
| 3.3.3-intel-2020b |
|
| 3.3.3-fosscuda-2020b |
|
| 3.0.3-foss-2021b-python-3.9.6 |
|
| 3.0.3-foss-2021a-python-3.9.5 |
|
| 3.0.3-foss-2019b-python-3.7.4 |
|
| 2.2.5-foss-2021b-python-2.7.18 |
|
maturin
This project is meant as a zero configuration replacement for setuptools-rust and milksnake. It supports building wheels for python 3.5+ on windows, linux, mac and freebsd, can upload them to pypi and has basic pypy and graalpy support.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.9.1-gcccore-14.3.0 |
|
| 1.4.0-gcccore-12.3.0-rust-1.75.0 |
|
| 1.3.1-gcccore-13.2.0 |
|
| 1.1.0-gcccore-12.3.0 |
|
maven
Binary maven install, Apache Maven is a software project management and comprehension tool. Based on the concept of a project object model (POM), Maven can manage a project's build, reporting and documentation from a central piece of information.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.9.7 |
|
mbrola
MBROLA is a speech synthesizer based on the concatenation of diphones. It takes a list of phonemes as input, together with prosodic information (duration of phonemes and a piecewise linear description of pitch), and produces speech samples on 16 bits (linear), at the sampling frequency of the diphone database. MBROLA voices project provides list of MBROLA speech synthesizer voices. It is intended to provide easier collaboration and automatic updates for individual users and packagers.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.3-gcccore-12.3.0-voices-20200330 |
|
mcpartools
mcpartools is a software simplifying time consuming simulation of particle transport using Monte Carlo codes (Fluka, SHIELDHIT12A).
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.6.2-gcccore-11.2.0-python-3.9.6 |
|
mcr
The MATLAB Runtime is a standalone set of shared libraries that enables the execution of compiled MATLAB applications or components on computers that do not have MATLAB installed.
| Versions | Environment loading command (via Lmod) |
|---|---|
| r2019b.8 |
|
mctc-lib
Modular computation tool chain library.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.3.1-gcccore-11.2.0 |
|
| 0.3.1-gcc-12.3.0 |
|
mdanalysis
MDAnalysis is an object-oriented Python library to analyze trajectories from molecular dynamics (MD) simulations in many popular formats.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.7.0-foss-2022b |
|
| 2.0.0-intel-2021b |
|
| 2.0.0-foss-2021b |
|
mdtraj
Read, write and analyze MD trajectories with only a few lines of Python code.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.9.9-gfbf-2023a |
|
| 1.9.7-foss-2021b |
|
meeko
Meeko: preparation of small molecules for AutoDock
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.3.3-foss-2021a |
|
meep
Meep (or MEEP) is a free finite-difference time-domain (FDTD) simulation software package developed at MIT to model electromagnetic systems.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.23.0-intel-2021b-python-3.9.6 |
|
megahit
An ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.2.9-gcccore-11.2.0 |
|
megan
MEGAN is a comprehensive toolbox for interactively analyzing microbiome data
| Versions | Environment loading command (via Lmod) |
|---|---|
| 6.24.23-java-17 |
|
mesa
Mesa is an open-source implementation of the OpenGL specification - a system for rendering interactive 3D graphics.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 23.1.4-gcccore-12.3.0 |
|
| 22.0.3-gcccore-11.3.0 |
|
| 21.1.7-gcccore-11.2.0-old_libpng |
|
| 21.1.7-gcccore-11.2.0 |
|
| 21.1.7 |
|
| 21.1.1-gcccore-10.3.0 |
|
| 20.2.1-gcccore-10.2.0 |
|
| 20.0.2-gcccore-9.3.0 |
|
meson
Meson is a cross-platform build system designed to be both as fast and as user friendly as possible.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.8.2-gcccore-14.3.0 |
|
| 1.4.0-gcccore-13.3.0 |
|
| 1.2.3-gcccore-13.2.0 |
|
| 1.1.1-gcccore-12.3.0 |
|
| 0.64.0-gcccore-12.2.0 |
|
| 0.64.0-gcccore-10.3.0 |
|
| 0.62.1-gcccore-11.3.0 |
|
| 0.58.2-gcccore-11.2.0 |
|
| 0.58.2 |
|
| 0.58.0-gcccore-10.3.0 |
|
| 0.55.3-gcccore-10.2.0 |
|
| 0.55.1-gcccore-9.3.0-python-3.8.2 |
|
| 0.51.2-gcccore-8.3.0-python-3.7.4 |
|
meson-python
Python build backend (PEP 517) for Meson projects
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.15.0-gcccore-13.2.0 |
|
| 0.13.2-gcccore-12.3.0 |
|
met
MET is designed to be a highly-configurable, state-of-the-art suite of verification tools. It was developed using output from the Weather Research and Forecasting (WRF) modeling system but may be applied to the output of other modeling systems as well.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 10.1.2-foss-2021b |
|
metaeuk
MetaEuk is a modular toolkit designed for large-scale gene discovery and annotation in eukaryotic metagenomic contigs.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4-gcc-11.2.0 |
|
| 4-gcc-10.2.0 |
|
metis
METIS is a set of serial programs for partitioning graphs, partitioning finite element meshes, and producing fill reducing orderings for sparse matrices. The algorithms implemented in METIS are based on the multilevel recursive-bisection, multilevel k-way, and multi-constraint partitioning schemes.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 5.1.0-gcccore-12.3.0-single |
|
| 5.1.0-gcccore-12.3.0 |
|
| 5.1.0-gcccore-11.3.0 |
|
| 5.1.0-gcccore-11.2.0 |
|
| 5.1.0-gcccore-10.3.0 |
|
| 5.1.0-gcccore-10.2.0 |
|
| 5.1.0-gcccore-8.3.0 |
|
mgltools
The MGLTools software suite can be used for visualization and analysis of molecular structures and comprises the Python Molecular Viewer (PMV, a general purpose molecular viewer), AutoDockTools (ADT, a set of PMV commands specifically developed to support AutoDock users) and Vision (a visual programming environment).
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.5.7 |
|
milo
No description available
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.0.3-gcccore-11.2.0 |
|
miniconda2
Miniconda is a free minimal installer for conda. It is a small, bootstrap version of Anaconda that includes only conda, Python, the packages they depend on, and a small number of other useful packages.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.7.10 |
|
miniconda3
Miniconda is a free minimal installer for conda. It is a small, bootstrap version of Anaconda that includes only conda, Python, the packages they depend on, and a small number of other useful packages.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 24.5.0-0 |
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| 23.5.2-0 |
|
| 23.3.1-0 |
|
| 4.9.2 |
|
minio-client
MinIO Client (mc) provides a modern alternative to UNIX commands like ls, cat, cp, mirror, diff, find etc. It supports filesystems and Amazon S3 compatible cloud storage service (AWS Signature v2 and v4).
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2024-07-31t15-58-33z |
|
| 2022-10-06t01-20-06z |
|
minizip
Mini zip and unzip based on zlib
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.1-gcccore-11.2.0 |
|
mirdeep2
miRDeep2 is a completely overhauled tool which discovers microRNA genes by analyzing sequenced RNAs
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.1.3-foss-2021b-python-3.9.6 |
|
ml_dtypes
ml_dtypes is a stand-alone implementation of several NumPy dtype extensions used in machine learning libraries, including: bfloat16: an alternative to the standard float16 format float8_*: several experimental 8-bit floating point representations including: float8_e4m3b11fnuz float8_e4m3fn float8_e4m3fnuz float8_e5m2 float8_e5m2fnuz
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.3.2-gfbf-2023a |
|
mm-common
The mm-common module provides the build infrastructure and utilities shared among the GNOME C++ binding libraries.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.0.4-gcccore-10.3.0 |
|
mmseqs2
MMseqs2: ultra fast and sensitive search and clustering suite
| Versions | Environment loading command (via Lmod) |
|---|---|
| 17-b804f-gcccore-12.3.0-cuda-12.2.0 |
|
| 17-b804f-gcccore-12.3.0 |
|
| 15-6f452-gompi-2023a |
|
| 15-6f452-gcccore-12.3.0 |
|
mmtk
The Molecular Modelling Toolkit
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.7.13-foss-2021b-python-2.7.18 |
|
moab
MOAB: Mesh-Oriented datABase
| Versions | Environment loading command (via Lmod) |
|---|---|
| 5.5.1-foss-2023a |
|
molpro
Molpro quantum chemistry package ver. 2023.1.0
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2023.1.0-sockets |
|
| 2022.1.2-sockets |
|
| 2022.1.2-mpipr |
|
| 2019.2.3.linux_x86_64_openmp |
|
| 2015.1.44.linux_x86_64_openmp |
|
molscat
MOLSCAT is a general-purpose package for performing non-reactive quantum scattering calculations for atomic and molecular collisions using coupled-channel methods.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2020.0-intel-compilers-2021.4.0 |
|
monai
Medical Open Network for AI
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.0.1 |
|
mopac
MOPAC is a semiempirical quantum chemistry software package for the prediction of chemical properties and modeling of chemical reactions
| Versions | Environment loading command (via Lmod) |
|---|---|
| 22.0.6-intel-2021b |
|
motif
Motif refers to both a graphical user interface (GUI) specification and the widget toolkit for building applications that follow that specification under the X Window System on Unix and other POSIX-compliant systems. It was the standard toolkit for the Common Desktop Environment and thus for Unix.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.3.8-gcccore-11.2.0 |
|
| 2.3.8-gcccore-10.3.0 |
|
motioncor2
MotionCor2 correct anisotropic image motion at the single pixel level across the whole frame, suitable for both single particle and tomographic images. Iterative, patch-based motion detection is combined with spatial and temporal constraints and dose weighting. Cite publication: Shawn Q. Zheng, Eugene Palovcak, Jean-Paul Armache, Yifan Cheng and David A. Agard (2016) Anisotropic Correction of Beam-induced Motion for Improved Single-particle Electron Cryo-microscopy, Nature Methods, submitted. BioArxiv: https://biorxiv.org/content/early/2016/07/04/061960
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.5.0-gcccore-11.3.0 |
|
| 1.4.5-gcccore-11.3.0 |
|
mpb
MPB is a free and open-source software package for computing the band structures, or dispersion relations, and electromagnetic modes of periodic dielectric structures, on both serial and parallel computers. MPB is an acronym for MIT Photonic Bands.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.11.1-intel-2021b-python-3.9.6 |
|
| 1.6.2-intel-2021b-python-3.9.6 |
|
mpc
Gnu Mpc is a C library for the arithmetic of complex numbers with arbitrarily high precision and correct rounding of the result. It extends the principles of the IEEE-754 standard for fixed precision real floating point numbers to complex numbers, providing well-defined semantics for every operation. At the same time, speed of operation at high precision is a major design goal.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.2.1-gcccore-11.2.0 |
|
| 1.2.1-gcccore-10.3.0 |
|
mpfr
The MPFR library is a C library for multiple-precision floating-point computations with correct rounding.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.2.0-gcccore-12.3.0 |
|
| 4.1.0-gcccore-11.3.0 |
|
| 4.1.0-gcccore-11.2.0 |
|
| 4.1.0-gcccore-10.3.0 |
|
| 4.1.0-gcccore-10.2.0 |
|
mpi4py
MPI for Python (mpi4py) provides bindings of the Message Passing Interface (MPI) standard for the Python programming language, allowing any Python program to exploit multiple processors.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.1.5-gompi-2023b |
|
| 3.1.4-gompi-2023a |
|
| 3.1.4-gompi-2022b |
|
mpifileutils
MPI-Based File Utilities For Distributed Systems
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.11.1-gompi-2021b |
|
mrcc
MRCC is a suite of ab initio and density functional quantum chemistry programs for high-accuracy electronic structure calculations developed and maintained by the quantum chemistry research group at the Department of Physical Chemistry and Materials Science, TU Budapest.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2023-08-28-intel-2023b-binary |
|
| 2022-03-18-intel-2021b |
|
| 2018-02-04-intel-compilers-2021.4.0-omp |
|
| 2018-02-04-intel-2021b |
|
mstore
Molecular structure store for testing
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.3.0-gcc-12.3.0 |
|
multiqc
Aggregate results from bioinformatics analyses across many samples into a single report. MultiQC searches a given directory for analysis logs and compiles an HTML report. It's a general use tool, perfect for summarising the output from numerous bioinformatics tools.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.12-foss-2021b |
|
multiwfn
Multiwfn is an extremely powerful program for realizingi electronic wavefunction analysis, which is a key ingredient of quantum chemistry. Multiwfn is free, open-source, high-efficient, very user-friendly and flexible, it supports almost all of the most important wavefunction analysis methods.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.8_dev-intel-2023b |
|
| 3.7-intel-2023b |
|
mumax3
mumax3 is a GPU-accelerated micromagnetic simulation program
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.10-cuda-11.7.0 |
|
mumps
A parallel sparse direct solver
| Versions | Environment loading command (via Lmod) |
|---|---|
| 5.6.1-foss-2023a-metis |
|
| 5.4.1-foss-2021b-metis |
|
muparser
muParser is an extensible high performance math expression parser library written in C++. It works by transforming a mathematical expression into bytecode and precalculating constant parts of the expression.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.3.4-gcccore-11.3.0 |
|
| 2.3.3-gcccore-11.3.0 |
|
| 2.3.3-gcccore-11.2.0 |
|
muscle
MUSCLE is one of the best-performing multiple alignment programs according to published benchmark tests, with accuracy and speed that are consistently better than CLUSTALW. MUSCLE can align hundreds of sequences in seconds. Most users learn everything they need to know about MUSCLE in a few minutes-only a handful of command-line options are needed to perform common alignment tasks.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 5.1-gcccore-11.2.0 |
|
| 3.8.31-gcccore-11.2.0 |
|
mvapich2
This is an MPI 3.0 implementation. It is based on MPICH2 and MVICH.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.3.7-gcc-11.2.0 |
|
| 2.3.6-gcccuda-2020a |
|
mvapich2-gdr
This is an MPI 3.0 implementation. It is based on MPICH2 and MVICH.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.3.6-gcc-7.3.0-cuda-11.2 |
|
namd
NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.0-iomkl-2023a-mpi |
|
| 3.0-gcc-12.3.0-cuda-12.1.1-gpuresident |
|
| 3.0-gcc-12.3.0-cuda-12.1.1 |
|
| 2.14-iomkl-2020b-mpi |
|
| 2.14-intel-2021a-mpi |
|
| 2.14-fosscuda-2020b |
|
nano
GNU nano text editor.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 6.2 |
|
| 5.6.1 |
|
nasm
NASM: General-purpose x86 assembler
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.16.01-gcccore-13.2.0 |
|
| 2.16.01-gcccore-12.3.0 |
|
| 2.15.05-gcccore-12.2.0 |
|
| 2.15.05-gcccore-11.3.0 |
|
| 2.15.05-gcccore-11.2.0 |
|
| 2.15.05-gcccore-10.3.0 |
|
| 2.15.05-gcccore-10.2.0 |
|
| 2.15.05 |
|
| 2.14.02-gcccore-9.3.0 |
|
| 2.14.02-gcccore-8.3.0 |
|
ncbi-vdb
The SRA Toolkit and SDK from NCBI is a collection of tools and libraries for using data in the INSDC Sequence Read Archives.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.11.2-gompi-2021b |
|
| 2.10.9-gompi-2021a |
|
nccl
The NVIDIA Collective Communications Library (NCCL) implements multi-GPU and multi-node collective communication primitives that are performance optimized for NVIDIA GPUs.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.18.3-gcccore-12.3.0-cuda-12.1.1 |
|
| 2.12.12-gcccore-11.3.0-cuda-11.7.0 |
|
| 2.10.3-gcccore-11.2.0-cuda-11.6.0 |
|
| 2.10.3-gcccore-11.2.0-cuda-11.4.1 |
|
| 2.10.3-gcccore-10.3.0-cuda-11.3.1 |
|
| 2.8.3-gcccore-10.2.0-cuda-11.1.1 |
|
| 2.8.3-cuda-11.1.1 |
|
nciplot
NCIPLOT is a program for revealing non covalent interactions based on the reduced density gradient.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.2-20221021-gcc-11.2.0 |
|
| 4.0-20200624-gcc-11.2.0 |
|
| 3.0-gcc-11.2.0 |
|
ncl
NCL is an interpreted language designed specifically for scientific data analysis and visualization.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 6.6.2-foss-2021b |
|
nco
The NCO toolkit manipulates and analyzes data stored in netCDF-accessible formats, including DAP, HDF4, and HDF5.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 5.1.9-foss-2023a |
|
ncurses
The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 6.5-gcccore-14.3.0 |
|
| 6.5-gcccore-13.3.0 |
|
| 6.5-gcccore-13.2.0 |
|
| 6.5 |
|
| 6.4-gcccore-13.2.0 |
|
| 6.4-gcccore-12.3.0 |
|
| 6.4 |
|
| 6.3-gcccore-12.2.0 |
|
| 6.3-gcccore-11.3.0 |
|
| 6.3 |
|
| 6.2-gcccore-11.2.0 |
|
| 6.2-gcccore-10.3.0 |
|
| 6.2-gcccore-10.2.0 |
|
| 6.2-gcccore-9.3.0 |
|
| 6.2 |
|
| 6.1-gcccore-8.3.0 |
|
| 6.1-gcccore-8.2.0 |
|
| 6.1 |
|
| 6.0-gcccore-9.3.0 |
|
| 6.0 |
|
| 5.9 |
|
netcdf
NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.9.2-gompi-2023a |
|
| 4.9.0-gompi-2022a |
|
| 4.8.1-iimpi-2021b |
|
| 4.8.1-gompi-2021b-hdf5-1.10.8 |
|
| 4.8.1-gompi-2021b-hdf4-4.2.15 |
|
| 4.8.1-gompi-2021b |
|
| 4.8.0-iimpi-2021a |
|
| 4.8.0-gompi-2021a |
|
| 4.7.4-iimpi-2020b |
|
| 4.7.4-gompic-2020b |
|
| 4.7.4-gompi-2020b |
|
| 4.7.1-gompi-2019b |
|
netcdf-c++4
NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.3.1-gompi-2023a |
|
| 4.3.1-gompi-2021b-hdf5-1.10.8 |
|
| 4.3.1-gompi-2021b |
|
netcdf-fortran
NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.6.1-gompi-2023a |
|
| 4.5.3-iimpi-2021b |
|
| 4.5.3-iimpi-2020b |
|
| 4.5.3-gompic-2020b |
|
| 4.5.3-gompi-2021b-hdf5-1.10.8 |
|
| 4.5.3-gompi-2021b |
|
| 4.5.3-gompi-2021a |
|
| 4.5.2-gompi-2019b |
|
nettle
Nettle is a cryptographic library that is designed to fit easily in more or less any context: In crypto toolkits for object-oriented languages (C++, Python, Pike, ...), in applications like LSH or GNUPG, or even in kernel space.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.9.1-gcccore-12.3.0 |
|
| 3.8-gcccore-11.3.0 |
|
| 3.7.3-gcccore-11.2.0 |
|
| 3.7.3 |
|
| 3.7.2-gcccore-10.3.0 |
|
| 3.6-gcccore-10.2.0 |
|
| 3.5.1-gcccore-8.3.0 |
|
networkx
NetworkX is a Python package for the creation, manipulation, and study of the structure, dynamics, and functions of complex networks.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.1-gfbf-2023a |
|
| 3.0-gfbf-2022b |
|
| 2.8.4-foss-2022a |
|
| 2.6.3-intel-2021b |
|
| 2.6.3-foss-2021b |
|
| 2.5-intel-2020b |
|
| 2.5-fosscuda-2020b |
|
newton-x
Newton-X is a general-purpose program package for simulating the dynamics of electronically excited molecules and molecular assemblies.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.0.1-gcc-11.2.0-07d573bc |
|
nextflow
Nextflow is a reactive workflow framework and a programming DSL that eases writing computational pipelines with complex data
| Versions | Environment loading command (via Lmod) |
|---|---|
| 24.04.2 |
|
nextpolish
NextPolish
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.4.1 |
|
nextpolish2
NextPolish2
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.2.0 |
|
nfft
The NFFT (nonequispaced fast Fourier transform or nonuniform fast Fourier transform) is a C subroutine library for computing the nonequispaced discrete Fourier transform (NDFT) and its generalisations in one or more dimensions, of arbitrary input size, and of complex data.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.5.2-foss-2021b |
|
nghttp2
This is an implementation of the Hypertext Transfer Protocol version 2 in C. The framing layer of HTTP/2 is implemented as a reusable C library. On top of that, we have implemented an HTTP/2 client, server and proxy. We have also developed load test and benchmarking tools for HTTP/2. An HPACK encoder and decoder are available as a public API.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.48.0-gcc-11.2.0 |
|
nghttp3
nghttp3 is an implementation of RFC 9114 HTTP/3 mapping over QUIC and RFC 9204 QPACK in C. It does not depend on any particular QUIC transport implementation.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.6.0-gcccore-11.2.0 |
|
nglview
IPython widget to interactively view molecular structures and trajectories.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.1.0-intel-2021b |
|
| 3.1.0-foss-2021b |
|
| 3.1.0 |
|
ngs
NGS is a new, domain-specific API for accessing reads, alignments and pileups produced from Next Generation Sequencing.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.11.2-gcccore-11.2.0 |
|
| 2.10.9-gcccore-10.3.0 |
|
ngsrelate
Program for analysing NGS data.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.0-gcc-11.2.0-ec95c8f |
|
| 2.0-gcc-11.2.0 |
|
ngtcp2
'Call it TCP/2. One More Time.' ngtcp2 project is an effort to implement RFC9000 QUIC protocol.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.7.0-gcc-11.2.0 |
|
nibabel
NiBabel provides read/write access to some common medical and neuroimaging file formats, including: ANALYZE (plain, SPM99, SPM2 and later), GIFTI, NIfTI1, NIfTI2, MINC1, MINC2, MGH and ECAT as well as Philips PAR/REC. We can read and write Freesurfer geometry, and read Freesurfer morphometry and annotation files. There is some very limited support for DICOM. NiBabel is the successor of PyNIfTI.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.2.1-foss-2021a |
|
ninja
Ninja is a small build system with a focus on speed.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.13.0-gcccore-14.3.0 |
|
| 1.12.1-gcccore-13.3.0 |
|
| 1.11.1-gcccore-13.2.0 |
|
| 1.11.1-gcccore-12.3.0 |
|
| 1.11.1-gcccore-12.2.0 |
|
| 1.10.2-gcccore-11.3.0 |
|
| 1.10.2-gcccore-11.2.0 |
|
| 1.10.2-gcccore-10.3.0 |
|
| 1.10.2 |
|
| 1.10.1-gcccore-10.2.0 |
|
| 1.10.0-gcccore-9.3.0 |
|
| 1.9.0-gcccore-8.3.0 |
|
nlohmann_json
JSON for Modern C++
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.11.2-gcccore-12.3.0 |
|
nlopt
NLopt is a free/open-source library for nonlinear optimization, providing a common interface for a number of different free optimization routines available online as well as original implementations of various other algorithms.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.7.1-gcccore-11.3.0 |
|
| 2.7.0-gcccore-11.2.0 |
|
| 2.7.0-gcccore-10.3.0 |
|
| 2.6.2-gcccore-10.2.0 |
|
nodejs
Node.js is a platform built on Chrome's JavaScript runtime for easily building fast, scalable network applications. Node.js uses an event-driven, non-blocking I/O model that makes it lightweight and efficient, perfect for data-intensive real-time applications that run across distributed devices.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 20.9.0-gcccore-13.2.0 |
|
| 18.17.1-gcccore-12.3.0 |
|
| 16.15.1-gcccore-11.3.0 |
|
| 14.17.6-gcccore-11.2.0 |
|
| 14.17.0-gcccore-10.3.0 |
|
| 12.19.0-gcccore-10.2.0 |
|
novoplasty
NOVOPlasty is a de novo assembler and heteroplasmy/variance caller for short circular genomes.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.3.3-gcccore-11.2.0 |
|
nspr
Netscape Portable Runtime (NSPR) provides a platform-neutral API for system level and libc-like functions.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.35-gcccore-12.3.0 |
|
| 4.34-gcccore-11.3.0 |
|
| 4.32-gcccore-11.2.0 |
|
| 4.30-gcccore-10.3.0 |
|
| 4.29-gcccore-10.2.0 |
|
nss
Network Security Services (NSS) is a set of libraries designed to support cross-platform development of security-enabled client and server applications.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.89.1-gcccore-12.3.0 |
|
| 3.79-gcccore-11.3.0 |
|
| 3.69-gcccore-11.2.0 |
|
| 3.65-gcccore-10.3.0 |
|
| 3.57-gcccore-10.2.0 |
|
nsync
nsync is a C library that exports various synchronization primitives, such as mutexes
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.26.0-gcccore-12.3.0 |
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| 1.25.0-gcccore-11.3.0 |
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| 1.24.0-gcccore-11.2.0 |
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| 1.24.0-gcccore-10.3.0 |
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| 1.24.0-gcccore-10.2.0 |
|
ntpoly
is a massively parallel library for computing the functions of sparse, symmetric matrices based on polynomial expansions. For sufficiently sparse matrices, most of the matrix functions in NTPoly can be computed in linear time.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.7.1-intel-2021b |
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| 2.7.0-intel-2021b |
|
| 2.7.0-intel-2021a |
|
numactl
The numactl program allows you to run your application program on specific cpu's and memory nodes. It does this by supplying a NUMA memory policy to the operating system before running your program. The libnuma library provides convenient ways for you to add NUMA memory policies into your own program.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.0.18-gcccore-13.3.0 |
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| 2.0.16-gcccore-13.2.0 |
|
| 2.0.16-gcccore-12.3.0 |
|
| 2.0.16-gcccore-12.2.0 |
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| 2.0.14-gcccore-11.3.0 |
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| 2.0.14-gcccore-11.2.0 |
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| 2.0.14-gcccore-10.3.0 |
|
| 2.0.14 |
|
| 2.0.13-gcccore-10.2.0 |
|
| 2.0.13-gcccore-9.3.0 |
|
| 2.0.12-gcccore-8.3.0 |
|
| 2.0.11-gcccore-7.3.0 |
|
numatop
NumaTOP is an observation tool for runtime memory locality characterization and analysis of processes and threads running on a NUMA system.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.3-gcc-11.2.0 |
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numba
Numba is an Open Source NumPy-aware optimizing compiler for Python sponsored by Continuum Analytics, Inc. It uses the remarkable LLVM compiler infrastructure to compile Python syntax to machine code.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.54.1-intel-2021b |
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| 0.54.1-foss-2021b |
|
nvbowtie
nvBowtie is a GPU-accelerated re-engineering of Bowtie2, a very widely used short-read aligner. While being completely rewritten from scratch, nvBowtie reproduces many (though not all) of the features of Bowtie2. The source code has been taken from NVBIO version updated to support CUDA 12 by https://github.com/FranckRICHARD01 https://github.com/FranckRICHARD01/RbowtieCuda/tree/main/src
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.1.50-gcc-12.3.0 |
|
nvhpc
C, C++ and Fortran compilers included with the NVIDIA HPC SDK (previously: PGI)
| Versions | Environment loading command (via Lmod) |
|---|---|
| 24.5-cuda-12.4.0 |
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| 23.7-cuda-12.2.0 |
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| 23.7-cuda-12.1.1 |
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| 22.11-cuda-11.7.0 |
|
| 22.7-cuda-11.7.0 |
|
| 22.7 |
|
| 22.3 |
|
nvompic
NVHPC based compiler toolchain, including OpenMPI for MPI support.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2022a |
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| 2021b |
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nvtop
htop-like GPU usage monitor
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.0.2-gcccore-11.3.0 |
|
nwchem
NWChem aims to provide its users with computational chemistry tools that are scalable both in their ability to treat large scientific computational chemistry problems efficiently, and in their use of available parallel computing resources from high-performance parallel supercomputers to conventional workstation clusters. NWChem software can handle: biomolecules, nanostructures, and solid-state; from quantum to classical, and all combinations; Gaussian basis functions or plane-waves; scaling from one to thousands of processors; properties and relativity.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 7.2.3-intel-2023a |
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| 7.2.2-intel-2023a |
|
obspy
ObsPy is an open-source project dedicated to provide a Python framework for processing seismological data.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.4.1-gfbf-2023a-python-3.11.3 |
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| 1.4.0-gcccore-11.2.0-python-3.9.6 |
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occt
Open CASCADE Technology (OCCT) is an object-oriented C++ class library designed for rapid production of sophisticated domain-specific CAD/CAM/CAE applications.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 7.5.0p1-foss-2021b |
|
octave
GNU Octave is a high-level interpreted language, primarily intended for numerical computations.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 8.2.0-foss-2021b |
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| 7.1.0-foss-2021b |
|
octopus
xtb - An extended tight-binding semi-empirical program package.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 16.0-foss-2023a |
|
ogre
Ogre is written in Python and interfaces with the FHI-aims code to calculate surface energies at the level of density functional theory (DFT).
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.0 |
|
omnisolver
Omnisolver is a collection of Binary Quadratic Model solvers and a framework for implementing them.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.0.3-foss-2021b-python-3.9.6 |
|
oneclient
oneclient is a command line Onedata client. It provides a POSIX interface to user's files in Onedata system.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 21.02.3 |
|
opari2
OPARI2, the successor of Forschungszentrum Juelich's OPARI, is a source-to-source instrumentation tool for OpenMP and hybrid codes. It surrounds OpenMP directives and runtime library calls with calls to the POMP2 measurement interface.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.0.7-gcccore-11.2.0 |
|
openbabel
Open Babel is a chemical toolbox designed to speak the many languages of chemical data. It's an open, collaborative project allowing anyone to search, convert, analyze, or store data from molecular modeling, chemistry, solid-state materials, biochemistry, or related areas.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.1.1-iimpi-2021b |
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| 3.1.1-gompi-2021b |
|
| 3.1.1-gompi-2021a |
|
openblas
OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.3.27-gcc-13.3.0 |
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| 0.3.24-gcc-13.2.0 |
|
| 0.3.23-gcc-12.3.0 |
|
| 0.3.21-gcc-12.2.0 |
|
| 0.3.20-gcc-11.3.0 |
|
| 0.3.17-gcc-11.2.0 |
|
| 0.3.15-gcc-10.3.0 |
|
| 0.3.12-gcc-10.2.0 |
|
| 0.3.9-gcc-9.3.0 |
|
| 0.3.7-gcc-8.3.0 |
|
| 0.3.5-gcc-8.2.0-2.31.1 |
|
opencfs
openCFS (Coupled Field Simulation) is a finite element-based multi-physics modelling and simulation tool.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2022w-gcccore-11.2.0 |
|
opencv
OpenCV (Open Source Computer Vision Library) is an open source computer vision and machine learning software library. OpenCV was built to provide a common infrastructure for computer vision applications and to accelerate the use of machine perception in the commercial products. Includes extra modules for OpenCV from the contrib repository.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.5.1-fosscuda-2020b-contrib |
|
opencv-python
Pre-built CPU-only OpenCV packages for Python.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.6.0.66-foss-2020b |
|
openexr
OpenEXR is a high dynamic-range (HDR) image file format developed by Industrial Light & Magic for use in computer imaging applications
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.1.7-gcccore-12.3.0 |
|
| 3.1.5-gcccore-11.3.0 |
|
| 2.5.5-gcccore-10.2.0 |
|
openfoam
OpenFOAM is a free, open source CFD software package. OpenFOAM has an extensive range of features to solve anything from complex fluid flows involving chemical reactions, turbulence and heat transfer, to solid dynamics and electromagnetics.
| Versions | Environment loading command (via Lmod) |
|---|---|
| v2406-foss-2023a |
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| v2206-foss-2021b |
|
| v2112-foss-2021b |
|
| v2106-foss-2021a |
|
| 10-foss-2022a-20230119 |
|
| 9-foss-2021b |
|
openjpeg
OpenJPEG is an open-source JPEG 2000 codec written in C language. It has been developed in order to promote the use of JPEG 2000, a still-image compression standard from the Joint Photographic Experts Group (JPEG). Since may 2015, it is officially recognized by ISO/IEC and ITU-T as a JPEG 2000 Reference Software.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.5.0-gcccore-13.2.0 |
|
| 2.5.0-gcccore-12.3.0 |
|
| 2.4.0-gcccore-11.2.0 |
|
| 2.4.0-gcccore-10.3.0 |
|
openmc
OpenMC Monte Carlo Particle Transport Code
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.15.2-foss-2023a-diagmc |
|
| 0.15.2-foss-2023a |
|
openmm
OpenMM is a toolkit for molecular simulation.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 8.0.0-intel-2022a |
|
| 8.0.0-foss-2022a |
|
openmolcas
OpenMolcas is a quantum chemistry software package.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 25.10-intel-2023b |
|
| 23.10-intel-2022a |
|
openmpi
The Open MPI Project is an open source MPI-3 implementation.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 5.0.2-gcc-13.2.0 |
|
| 4.1.6-gcc-13.2.0 |
|
| 4.1.5-intel-compilers-2023.1.0 |
|
| 4.1.5-gcc-12.3.0 |
|
| 4.1.4-nvhpc-22.11-cuda-11.7.0 |
|
| 4.1.4-nvhpc-22.7-cuda-11.7.0 |
|
| 4.1.4-gcc-12.2.0 |
|
| 4.1.4-gcc-11.3.0 |
|
| 4.1.4-gcc-11.2.0 |
|
| 4.1.2-nvhpc-22.7 |
|
| 4.1.2-nvhpc-22.3 |
|
| 4.1.2-intel-compilers-2021.4.0 |
|
| 4.1.2-gcc-11.2.0-cuda-11.4.1 |
|
| 4.1.2-gcc-11.2.0 |
|
| 4.1.1-intel-compilers-2021.2.0 |
|
| 4.1.1-gcc-11.2.0 |
|
| 4.1.1-gcc-10.3.0 |
|
| 4.0.5-iccifort-2020.4.304 |
|
| 4.0.5-gcccuda-2020b |
|
| 4.0.5-gcc-10.2.0 |
|
| 4.0.3-gcc-9.3.0 |
|
| 3.1.4-gcc-8.3.0 |
|
| 3.1.3-gcc-8.2.0-2.31.1 |
|
| 2.1.2-intel-compilers-2021.2.0 |
|
| 1.10.4-gcc-10.3.0 |
|
openmx
OpenMX (Open source package for Material eXplorer) is a software package for nano-scale material simulations based on density functional theories (DFT), norm-conserving pseudopotentials, and pseudo-atomic localized basis functions.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.9.9-iomkl-2021b |
|
openpgm
OpenPGM is an open source implementation of the Pragmatic General Multicast (PGM) specification in RFC 3208 available at www.ietf.org. PGM is a reliable and scalable multicast protocol that enables receivers to detect loss, request retransmission of lost data, or notify an application of unrecoverable loss. PGM is a receiver-reliable protocol, which means the receiver is responsible for ensuring all data is received, absolving the sender of reception responsibility.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 5.2.122-gcccore-14.3.0 |
|
| 5.2.122-gcccore-13.2.0 |
|
| 5.2.122-gcccore-12.3.0 |
|
| 5.2.122-gcccore-11.3.0 |
|
| 5.2.122-gcccore-11.2.0 |
|
| 5.2.122-gcccore-10.3.0 |
|
| 5.2.122-gcccore-10.2.0 |
|
openqp
Open Quantum Platform (OpenQP) is a quantum chemical platform featuring cutting-edge capabilities like Mixed-Reference Spin-Flip (MRSF)-TDDFT with an emphasis on open-source ecosystem.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.0-foss-2023a |
|
openssl
The OpenSSL Project is a collaborative effort to develop a robust, commercial-grade, full-featured, and Open Source toolchain implementing the Secure Sockets Layer (SSL v2/v3) and Transport Layer Security (TLS v1) protocols as well as a full-strength general purpose cryptography library.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3 |
|
| 1.1.1k-gcccore-11.2.0 |
|
| 1.1 |
|
| 1.0.2o-gcccore-11.2.0 |
|
orbkit
ORBKIT is a parallel Python program package for post-processing wave function data from output files of quantum chemical programs.
| Versions | Environment loading command (via Lmod) |
|---|---|
| dcfcc20-foss-2023a |
|
orca
ORCA is a flexible, efficient and easy-to-use general purpose tool for quantum chemistry with specific emphasis on spectroscopic properties of open-shell molecules. It features a wide variety of standard quantum chemical methods ranging from semiempirical methods to DFT to single- and multireference correlated ab initio methods. It can also treat environmental and relativistic effects.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 6.1.0-gompi-2023b |
|
| 6.0.1-gompi-2023b |
|
| 6.0.0-openmpi-4.1.5 |
|
| 5.0.4-openmpi-4.1.4 |
|
| 5.0.3-openmpi-4.1.2 |
|
| 5.0.2-openmpi-4.1.1 |
|
| 5.0.1-openmpi-4.1.1 |
|
| 5.0.0-openmpi-4.1.1 |
|
| 4.2.1-gompi-2019b |
|
osprey
Open-Source Protein Redesign For You
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.3 |
|
osprey-server
IPython provides a rich architecture for interactive computing with: Powerful interactive shells (terminal and Qt-based). A browser-based notebook with support for code, text, mathematical expressions, inline plots and other rich media. Support for interactive data visualization and use of GUI toolkits. Flexible, embeddable interpreters to load into your own projects. Easy to use, high performance tools for parallel computing.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.0.2-python-3.9.6 |
|
osu-micro-benchmarks
OSU Micro-Benchmarks
| Versions | Environment loading command (via Lmod) |
|---|---|
| 7.3-iimpi-2023a |
|
| 7.3-iimpi-2021b |
|
| 7.3-gompi-2023a |
|
| 5.9-gompi-2021b-cuda-11.4.1 |
|
| 5.7-gompi-2020b |
|
| 5.7-gcccuda-2020a-mvapich2-2.3.6 |
|
| 5.7-gcccuda-2020a |
|
otf2
The Open Trace Format 2 is a highly scalable, memory efficient event trace data format plus support library. It is the new standard trace format for Scalasca, Vampir, and TAU and is open for other tools.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.0.2-gcccore-11.2.0 |
|
p11-kit
Provides a way to load and enumerate PKCS#11 modules. Provides a standard configuration setup for installing PKCS#11 modules in such a way that they're discoverable. Also solves problems with coordinating the use of PKCS#11 by different components or libraries living in the same process.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.24.1-gcccore-11.2.0 |
|
| 0.24.1 |
|
p7zip
p7zip is a quick port of 7z.exe and 7za.exe (CLI version of 7zip) for Unix. 7-Zip is a file archiver with highest compression ratio.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 17.04-gcccore-11.2.0 |
|
packmol
Packing Optimization for Molecular Dynamics Simulations
| Versions | Environment loading command (via Lmod) |
|---|---|
| 20.14.4-gcc-12.3.0 |
|
pandoc
If you need to convert files from one markup format into another, pandoc is your swiss-army knife
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.1.2 |
|
pango
Pango is a library for laying out and rendering of text, with an emphasis on internationalization. Pango can be used anywhere that text layout is needed, though most of the work on Pango so far has been done in the context of the GTK+ widget toolkit. Pango forms the core of text and font handling for GTK+-2.x.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.50.14-gcccore-12.3.0 |
|
| 1.50.7-gcccore-11.3.0 |
|
| 1.48.8-gcccore-11.2.0 |
|
| 1.48.8 |
|
| 1.48.5-gcccore-10.3.0 |
|
| 1.47.0-gcccore-10.2.0 |
|
papi
PAPI provides the tool designer and application engineer with a consistent interface and methodology for use of the performance counter hardware found in most major microprocessors. PAPI enables software engineers to see, in near real time, the relation between software performance and processor events. In addition Component PAPI provides access to a collection of components that expose performance measurement opportunites across the hardware and software stack.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 6.0.0.1-gcccore-11.2.0 |
|
parallel
parallel: Build and execute shell commands in parallel
| Versions | Environment loading command (via Lmod) |
|---|---|
| 20210722-gcccore-11.2.0 |
|
| 20210322-gcccore-10.2.0 |
|
paraview
ParaView is a scientific parallel visualizer.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 5.11.2-foss-2023a |
|
| 5.11.1-foss-2021b-mpi |
|
| 5.10.1-foss-2022a-mpi |
|
| 5.9.1-foss-2021b-mpi |
|
| 5.9.1-foss-2021a-mpi |
|
| 5.8.1-foss-2020b-mpi |
|
pari-gp
PARI/GP is a widely used computer algebra system designed for fast computations in number theory (factorizations, algebraic number theory, elliptic curves...), but also contains a large number of other useful functions to compute with mathematical entities such as matrices, polynomials, power series, algebraic numbers etc., and a lot of transcendental functions. PARI is also available as a C library to allow for faster computations.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.14.0-gcccore-10.3.0-dev-omp |
|
| 2.14.0-foss-2021a-dev-mpi |
|
| 2.13.2-gcccore-10.3.0-omp |
|
| 2.13.2-foss-2021a-mpi |
|
parmetis
ParMETIS is an MPI-based parallel library that implements a variety of algorithms for partitioning unstructured graphs, meshes, and for computing fill-reducing orderings of sparse matrices. ParMETIS extends the functionality provided by METIS and includes routines that are especially suited for parallel AMR computations and large scale numerical simulations. The algorithms implemented in ParMETIS are based on the parallel multilevel k-way graph-partitioning, adaptive repartitioning, and parallel multi-constrained partitioning schemes.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.0.3-iimpi-2021b |
|
| 4.0.3-gompi-2019b |
|
patchelf
PatchELF is a small utility to modify the dynamic linker and RPATH of ELF executables.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.18.0-gcccore-14.3.0 |
|
| 0.18.0-gcccore-13.3.0 |
|
| 0.18.0-gcccore-13.2.0 |
|
| 0.18.0-gcccore-12.3.0 |
|
| 0.15.0-gcccore-11.3.0 |
|
pblat
When the query file format is fasta, you can specify many threads to process it. It can reduce run time linearly, and use almost equal memory as the original blat program. This is useful when you blat a big query file to a huge reference like human whole genome sequence.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.5.1-foss-2021b |
|
pcmsolver
An API for the Polarizable Continuum Model.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.2.3-iimpi-2023b-python-3.11.5 |
|
| 1.2.3-iimpi-2021b-python-3.9.6 |
|
| 1.2.3-iimpi-2020b-python-3.8.6 |
|
| 1.2.3-gompi-2021b-python-3.9.6 |
|
pcre
The PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl 5.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 8.45-gcccore-12.3.0 |
|
| 8.45-gcccore-11.3.0 |
|
| 8.45-gcccore-11.2.0 |
|
| 8.45 |
|
| 8.44-gcccore-10.3.0 |
|
| 8.44-gcccore-10.2.0 |
|
| 8.43-gcccore-8.3.0 |
|
pcre2
The PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl 5.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 10.42-gcccore-13.2.0 |
|
| 10.42-gcccore-12.3.0 |
|
| 10.40-gcccore-11.3.0 |
|
| 10.37-gcccore-11.2.0 |
|
| 10.36-gcccore-10.3.0 |
|
| 10.35-gcccore-10.2.0 |
|
pdal
PDAL - Point Data Abstraction Library
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.8.2-foss-2023a |
|
| 2.6.2-foss-2021b |
|
pdt
Program Database Toolkit (PDT) is a framework for analyzing source code written in several programming languages and for making rich program knowledge accessible to developers of static and dynamic analysis tools. PDT implements a standard program representation, the program database (PDB), that can be accessed in a uniform way through a class library supporting common PDB operations.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.25.1-gcccore-11.2.0 |
|
peridigm
Peridigm is an open-source computational peridynamics code developed at Sandia National Laboratories for massively-parallel multi-physics simulations.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.5.0-foss-2019b |
|
perl
Larry Wall's Practical Extraction and Report Language Includes a small selection of extra CPAN packages for core functionality.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 5.40.2-gcccore-14.3.0 |
|
| 5.38.2-gcccore-13.3.0 |
|
| 5.38.0-gcccore-13.2.0 |
|
| 5.38.0 |
|
| 5.36.1-gcccore-12.3.0 |
|
| 5.36.0-gcccore-12.2.0 |
|
| 5.34.1-gcccore-11.3.0-minimal |
|
| 5.34.1-gcccore-11.3.0 |
|
| 5.34.0-gcccore-11.2.0-minimal |
|
| 5.34.0-gcccore-11.2.0 |
|
| 5.34.0 |
|
| 5.32.1-gcccore-10.3.0 |
|
| 5.32.0-gcccore-10.2.0 |
|
| 5.30.2-gcccore-9.3.0 |
|
| 5.30.0-gcccore-8.3.0 |
|
| 5.28.1-gcccore-8.2.0 |
|
| 5.28.0-gcccore-7.3.0 |
|
perl-bundle-cpan
A set of common packages from CPAN
| Versions | Environment loading command (via Lmod) |
|---|---|
| 5.38.0-gcccore-13.2.0 |
|
| 5.38.0 |
|
| 5.36.1-gcccore-12.3.0 |
|
petsc
PETSc, pronounced PET-see (the S is silent), is a suite of data structures and routines for the scalable (parallel) solution of scientific applications modeled by partial differential equations.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.18.4-foss-2021b |
|
| 3.18.2-foss-2021b |
|
| 3.11.0-foss-2021b-downloaded-deps |
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| 2.3.3-foss-2021b |
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pgi
C, C++ and Fortran compilers from The Portland Group - PGI
| Versions | Environment loading command (via Lmod) |
|---|---|
| 18.10-gcc-10.2.0-2.35 |
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pgplot
The PGPLOT Graphics Subroutine Library is a Fortran- or C-callable, device-independent graphics package for making simple scientific graphs. It is intended for making graphical images of publication quality with minimum effort on the part of the user. For most applications, the program can be device-independent, and the output can be directed to the appropriate device at run time.
| Versions | Environment loading command (via Lmod) |
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| 5.2.2-gcccore-11.2.0 |
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phonopy
Phonopy is an open source package of phonon calculations based on the supercell approach.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.20.0-foss-2023a |
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php
A popular general-purpose scripting language that is especially suited to web development.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 8.1.10 |
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picard
A set of tools (in Java) for working with next generation sequencing data in the BAM format.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.26.0-java-11 |
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| 2.25.1-java-11 |
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pigz
pigz, which stands for parallel implementation of gzip, is a fully functional replacement for gzip that exploits multiple processors and multiple cores to the hilt when compressing data. pigz was written by Mark Adler, and uses the zlib and pthread libraries.
| Versions | Environment loading command (via Lmod) |
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| 2.7-gcccore-11.3.0 |
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pillow
Pillow is the 'friendly PIL fork' by Alex Clark and Contributors. PIL is the Python Imaging Library by Fredrik Lundh and Contributors.
| Versions | Environment loading command (via Lmod) |
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| 10.2.0-gcccore-13.2.0 |
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| 10.0.0-gcccore-12.3.0 |
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| 9.4.0-gcccore-12.2.0 |
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| 9.1.1-gcccore-11.3.0 |
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| 9.1.1-gcccore-11.2.0 |
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| 8.3.2-gcccore-11.2.0 |
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| 8.2.0-gcccore-10.3.0 |
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| 8.0.1-gcccore-10.2.0 |
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pillow-simd
Pillow is the 'friendly PIL fork' by Alex Clark and Contributors. PIL is the Python Imaging Library by Fredrik Lundh and Contributors.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 9.5.0-gcccore-12.3.0 |
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| 8.2.0-gcccore-10.3.0 |
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pint
Pint is a Python package to define, operate and manipulate physical quantities: the product of a numerical value and a unit of measurement. It allows arithmetic operations between them and conversions from and to different units.
| Versions | Environment loading command (via Lmod) |
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| 0.23-gcccore-12.3.0 |
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| 0.14-gcccore-11.2.0-python-3.9.6 |
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| 0.14-gcccore-10.2.0-python-3.8.6 |
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pionier-lab-qcg-pilotjob
QCG-PilotJob is a flexible service for execution of many computing tasks inside one allocation.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.14.0 |
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pixman
Pixman is a low-level software library for pixel manipulation, providing features such as image compositing and trapezoid rasterization. Important users of pixman are the cairo graphics library and the X server.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.42.2-gcccore-12.3.0 |
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| 0.42.2 |
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| 0.40.0-gcccore-11.3.0 |
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| 0.40.0-gcccore-11.2.0 |
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| 0.40.0-gcccore-10.3.0 |
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| 0.40.0-gcccore-10.2.0 |
|
| 0.40.0 |
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| 0.38.4-gcccore-8.3.0 |
|
pkg-config
pkg-config is a helper tool used when compiling applications and libraries. It helps you insert the correct compiler options on the command line so an application can use gcc -o test test.c `pkg-config --libs --cflags glib-2.0` for instance, rather than hard-coding values on where to find glib (or other libraries).
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.29.2-gcccore-13.2.0 |
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| 0.29.2-gcccore-12.3.0 |
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| 0.29.2-gcccore-11.3.0 |
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| 0.29.2-gcccore-11.2.0 |
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| 0.29.2-gcccore-10.3.0 |
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| 0.29.2-gcccore-10.2.0 |
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| 0.29.2-gcccore-9.3.0 |
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| 0.29.2-gcccore-8.3.0 |
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| 0.29.2-gcccore-8.2.0 |
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| 0.29.2 |
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pkgconf
pkgconf is a program which helps to configure compiler and linker flags for development libraries. It is similar to pkg-config from freedesktop.org.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.4.3-gcccore-14.3.0 |
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| 2.2.0-gcccore-13.3.0 |
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| 2.2.0-gcccore-13.2.0 |
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| 2.0.3-gcccore-13.2.0 |
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| 1.9.5-gcccore-12.3.0 |
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| 1.9.3-gcccore-12.2.0 |
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| 1.9.3 |
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| 1.8.0-gcccore-11.3.0 |
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| 1.8.0-gcccore-11.2.0 |
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| 1.8.0 |
|
pkgconfig
pkgconfig is a Python module to interface with the pkg-config command line tool
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.5.5-gcccore-12.3.0-python |
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| 1.5.5-gcccore-12.2.0-python |
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| 1.5.5-gcccore-11.3.0-python |
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| 1.5.5-gcccore-11.2.0-python |
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| 1.5.4-gcccore-10.3.0-python |
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| 1.5.1-gcccore-10.2.0-python |
|
plink
Whole-genome association analysis toolset
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.00a3.1-gcc-11.2.0 |
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| 1.9b_6.21-x86_64 |
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plumed
PLUMED is an open source library for free energy calculations in molecular systems which works together with some of the most popular molecular dynamics engines. Free energy calculations can be performed as a function of many order parameters with a particular focus on biological problems, using state of the art methods such as metadynamics, umbrella sampling and Jarzynski-equation based steered MD. The software, written in C++, can be easily interfaced with both fortran and C/C++ codes.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.9b-foss-2021b |
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| 2.9.3-foss-2023a |
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| 2.9.2-foss-2021bfix-gh1172 |
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| 2.9.2-foss-2021b-fix-gh1172 |
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| 2.9.2-foss-2021b |
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| 2.8.2-foss-2021b |
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| 2.8.1-foss-2021b |
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| 2.8.0-foss-2021b-serial |
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| 2.8.0-foss-2021b |
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| 2.7.2-iomkl-2021a |
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| 2.7.2-intel-2021a |
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| 2.7.2-intel-2020b |
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| 2.7.1-intel-2020b |
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| 2.6.0-intel-2020a-python-3.8.2 |
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| 2.6.0-intel-2020a |
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| 2.5.2-iomkl-2021a |
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pmdtools
Compute postmortem damage patterns and decontaminate ancient genomes.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.60-foss-2021b |
|
pmix
Process Management for Exascale Environments PMI Exascale (PMIx) represents an attempt to provide an extended version of the PMI standard specifically designed to support clusters up to and including exascale sizes. The overall objective of the project is not to branch the existing pseudo-standard definitions - in fact, PMIx fully supports both of the existing PMI-1 and PMI-2 APIs - but rather to (a) augment and extend those APIs to eliminate some current restrictions that impact scalability, and (b) provide a reference implementation of the PMI-server that demonstrates the desired level of scalability.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 5.0.2-gcccore-13.3.0 |
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| 5.0.2-gcccore-13.2.0 |
|
| 4.2.6-gcccore-13.2.0 |
|
| 4.2.4-gcccore-12.3.0 |
|
| 4.2.2-gcccore-12.2.0 |
|
| 4.1.2-gcccore-11.3.0 |
|
| 4.1.0-gcccore-11.2.0 |
|
| 4.1.0 |
|
| 3.2.3-gcccore-10.3.0 |
|
| 3.1.5-gcccore-10.2.0 |
|
pnetcdf
Parallel netCDF: A Parallel I/O Library for NetCDF File Access
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.12.3-gompi-2023a |
|
| 1.12.3-gompi-2021b |
|
| 1.12.2-iimpi-2021b |
|
| 1.12.2-gompic-2020b |
|
| 1.12.2-gompi-2021b |
|
| 1.12.1-iimpi-2021a |
|
| 1.12.1-iimpi-2020b |
|
| 1.12.1-gompi-2019b |
|
pocl
Pocl is a portable open source (MIT-licensed) implementation of the OpenCL standard
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.8-gcc-11.2.0 |
|
poco
POCO (Portable Components) C++ Libraries
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.12.4-gcccore-11.3.0 |
|
poetry
Python packaging and dependency management made easy. Poetry helps you declare, manage and install dependencies of Python projects, ensuring you have the right stack everywhere.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.1.3-gcccore-14.3.0 |
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| 1.8.3-gcccore-13.3.0 |
|
| 1.8.3-gcccore-12.3.0 |
|
| 1.7.1-gcccore-12.3.0 |
|
| 1.6.1-gcccore-13.2.0 |
|
| 1.5.1-gcccore-12.3.0 |
|
poppler
Poppler is a PDF rendering library
| Versions | Environment loading command (via Lmod) |
|---|---|
| 22.01.0-gcc-11.2.0 |
|
popt
Popt is a C library for parsing command line parameters.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.19-gcc-12.3.0 |
|
postgresql
PostgreSQL is a powerful, open source object-relational database system. It is fully ACID compliant, has full support for foreign keys, joins, views, triggers, and stored procedures (in multiple languages). It includes most SQL:2008 data types, including INTEGER, NUMERIC, BOOLEAN, CHAR, VARCHAR, DATE, INTERVAL, and TIMESTAMP. It also supports storage of binary large objects, including pictures, sounds, or video. It has native programming interfaces for C/C++, Java, .Net, Perl, Python, Ruby, Tcl, ODBC, among others, and exceptional documentation.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 16.1-gcccore-13.2.0 |
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| 16.1-gcccore-12.3.0 |
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| 13.4-gcccore-11.2.0 |
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pov-ray
The Persistence of Vision Raytracer, or POV-Ray, is a ray tracing program which generates images from a text-based scene description, and is available for a variety of computer platforms. POV-Ray is a high-quality, Free Software tool for creating stunning three-dimensional graphics. The source code is available for those wanting to do their own ports.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.7.0.10-gcc-11.3.0 |
|
| 3.7.0.10-gcc-11.2.0 |
|
| 3.7.0.8-iccifort-2020.4.304 |
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precice
preCICE (Precise Code Interaction Coupling Environment) is a coupling library for partitioned multi-physics simulations, including, but not restricted to fluid-structure interaction and conjugate heat transfer simulations. Partitioned means that preCICE couples existing programs (solvers) capable of simulating a subpart of the complete physics involved in a simulation. This allows for the high flexibility that is needed to keep a decent time-to-solution for complex multi-physics scenarios.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.5.0-foss-2021b-python-3.9.6 |
|
pro-viz
pro-viz env setter
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.10.1 |
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| 1.10.0 |
|
| 1.9.4 |
|
| 1.9.3 |
|
| 1.9.2 |
|
| 1.9.1 |
|
| 1.9.0 |
|
prodigal
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a microbial (bacterial and archaeal) gene finding program developed at Oak Ridge National Laboratory and the University of Tennessee.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.6.3-gcccore-11.2.0 |
|
| 2.6.3-gcccore-10.2.0 |
|
proj
Program proj is a standard Unix filter function which converts geographic longitude and latitude coordinates into cartesian coordinates
| Versions | Environment loading command (via Lmod) |
|---|---|
| 9.2.0-gcccore-12.3.0 |
|
| 8.1.0-gcccore-11.2.0 |
|
| 8.0.1-gcccore-10.3.0 |
|
| 7.2.1-gcccore-10.2.0 |
|
prokka
Prokka is a software tool for the rapid annotation of prokaryotic genomes.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.14.6-gompi-2021a |
|
| 1.14.6 |
|
protein-bert
ProteinBERT is a protein language model pretrained on ~106M proteins from UniRef90.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.0.1-foss-2021b-cuda-11.4.1 |
|
protobuf
Protocol Buffers (a.k.a., protobuf) are Google's language-neutral, platform-neutral, extensible mechanism for serializing structured data.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 24.0-gcccore-12.3.0 |
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| 3.19.4-gcccore-11.3.0 |
|
| 3.17.3-gcccore-11.2.0 |
|
| 3.17.3-gcccore-10.3.0 |
|
| 3.14.0-gcccore-10.2.0 |
|
protobuf-python
Python Protocol Buffers runtime library.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.24.0-gcccore-12.3.0 |
|
| 3.19.4-gcccore-11.3.0 |
|
| 3.17.3-gcccore-11.2.0 |
|
| 3.17.3-gcccore-10.3.0 |
|
| 3.14.0-gcccore-10.2.0 |
|
proxygen
Proxygen: Facebooks C++ HTTP Libraries
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2023.08.07.00-gcc-11.3.0 |
|
| 2021.12.13.00-gcc-11.3.0 |
|
| 2021.11.29.00-gcc-11.3.0 |
|
prrte
PRRTE is the PMIx Reference RunTime Environment
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.0.5-gcccore-13.3.0 |
|
| 3.0.5-gcc-13.2.0 |
|
psi4
PSI4 is an open-source suite of ab initio quantum chemistry programs designed for efficient, high-accuracy simulations of a variety of molecular properties. We can routinely perform computations with more than 2500 basis functions running serially or in parallel.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.9.1-foss-2023a-lmax-10 |
|
| 1.9.1 |
|
| 1.8.1 |
|
| 1.3.2-intel-2020b-python-3.8.6 |
|
| 1.3.2-foss-2021b-python-3.9.6 |
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| 1.3.2 |
|
pstack
JSON-C implements a reference counting object model that allows you to easily construct JSON objects in C, output them as JSON formatted strings and parse JSON formatted strings back into the C representation of JSON objects.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.14-gcccore-11.2.0 |
|
psutil
A cross-platform process and system utilities module for Python
| Versions | Environment loading command (via Lmod) |
|---|---|
| 6.0.0-gcccore-13.3.0 |
|
| 5.9.5-gcccore-12.2.0 |
|
psycopg
Psycopg is the most popular PostgreSQL adapter for the Python programming language.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.1.18-gcccore-13.2.0 |
|
psycopg2
Psycopg is the most popular PostgreSQL adapter for the Python programming language.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.9.9-gcccore-12.3.0 |
|
pugixml
pugixml is a light-weight C++ XML processing library
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.12.1-gcccore-11.2.0 |
|
py-cpuinfo
py-cpuinfo gets CPU info with pure Python.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 9.0.0-gcccore-12.3.0 |
|
py4vasp
py4vasp is a python interface to extract data from VASP calculations
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.7.3 |
|
pyadf
PyADF - A scripting framework for multiscale quantum chemistry (public release versions)
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.4-intel-2021b |
|
pybind11
pybind11 is a lightweight header-only library that exposes C++ types in Python and vice versa, mainly to create Python bindings of existing C++ code.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.11.1-gcccore-13.2.0 |
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| 2.11.1-gcccore-12.3.0 |
|
| 2.10.3-gcccore-12.2.0 |
|
| 2.9.2-gcccore-11.3.0 |
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| 2.7.1-gcccore-11.2.0-python-2.7.18 |
|
| 2.7.1-gcccore-11.2.0 |
|
| 2.6.2-gcccore-10.3.0 |
|
| 2.6.0-gcccore-10.2.0 |
|
| 2.4.3-gcccore-9.3.0-python-3.8.2 |
|
pycairo
Python bindings for the cairo library
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.25.0-gcccore-12.3.0 |
|
pycbc
PyCBC is a software package used to explore astrophysical sources of gravitational waves.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.2.2 |
|
pycomplexes
Monte-Carlo engine to run simulations
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4183ef6-foss-2021b |
|
pycurl
PycURL is a Python interface to libcurl. PycURL can be used to fetch objects identified by a URL from a Python program, similar to the urllib Python module. PycURL is mature, very fast, and supports a lot of features.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 7.45.3-gcccore-13.2.0 |
|
| 7.45.2-gcccore-12.3.0 |
|
pycvodes
pycvodes provides a Python binding to the Ordinary Differential Equation integration routines from cvodes in the SUNDIALS suite
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.14.1 |
|
pydamage
Pydamage, is a Python software to automate the process of contig damage identification and estimation.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.70-intel-2021b-python-3.9.6 |
|
pydantic
Data validation and settings management using Python type hinting.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.5.3-gcccore-12.3.0 |
|
| 1.6.1-gcccore-11.2.0-python-3.9.6 |
|
| 1.6.1-gcccore-10.2.0-python-3.8.6 |
|
pydicom
Pure python package for DICOM medical file reading and writing.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.2.2-gcccore-10.3.0 |
|
pygobject
PyGObject is a Python package which provides bindings for GObject based libraries such as GTK, GStreamer, WebKitGTK, GLib, GIO and many more.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.46.0-gcccore-12.3.0 |
|
pygraphviz
PyGraphviz is a Python interface to the Graphviz graph layout and visualization package. With PyGraphviz you can create, edit, read, write, and draw graphs using Python to access the Graphviz graph data structure and layout algorithms.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.10-gcccore-11.2.0 |
|
pymchelper
pymchelper is a toolkit for aiding users of the particle transport codes, such as FLUKA and SHIELD-HIT12A.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.7.6-foss-2021b-python-3.9.6 |
|
pymcubes
Python extension for computing string edit distances and similarities.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.1.4-foss-2021b-74fcdbc |
|
pymol
PyMOL is a Python-enhanced molecular graphics tool. It excels at 3D visualization of proteins, small molecules, density, surfaces, and trajectories. It also includes molecular editing, ray tracing, and movies. Open Source PyMOL is free to everyone!
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.5.0-foss-2021b |
|
pyproj
Python interface to PROJ4 library for cartographic transformations
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.6.0-gcccore-12.3.0 |
|
pyqt5
PyQt5 is a set of Python bindings for v5 of the Qt application framework from The Qt Company. This bundle includes PyQtWebEngine, a set of Python bindings for The Qt Company’s Qt WebEngine framework.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 5.15.4-gcccore-11.2.0 |
|
| 5.15.4-gcccore-10.3.0 |
|
pysam
Pysam is a python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.22.0-gcc-12.3.0 |
|
| 0.21.0-gcc-12.2.0 |
|
| 0.18.0-intel-2021b |
|
| 0.17.0-gcc-11.2.0-python-2.7.18 |
|
| 0.17.0-gcc-11.2.0 |
|
pytest
The pytest framework makes it easy to write small, readable tests, and can scale to support complex functional testing for applications and libraries.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 7.4.2-gcccore-12.3.0 |
|
| 7.2.2-gcccore-11.2.0 |
|
pytest-flakefinder
Runs tests multiple times to expose flakiness.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.1.0-gcccore-12.3.0 |
|
pytest-rerunfailures
pytest plugin to re-run tests to eliminate flaky failures.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 12.0-gcccore-12.3.0 |
|
pytest-shard
pytest plugin to support parallelism across multiple machines. Shards tests based on a hash of their test name enabling easy parallelism across machines, suitable for a wide variety of continuous integration services. Tests are split at the finest level of granularity, individual test cases, enabling parallelism even if all of your tests are in a single file (or even single parameterized test method).
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.1.2-gcccore-12.3.0 |
|
pytest-xdist
xdist: pytest distributed testing plugin The pytest-xdist plugin extends pytest with some unique test execution modes: * test run parallelization: if you have multiple CPUs or hosts you can use those for a combined test run. This allows to speed up development or to use special resources of remote machines. * --looponfail: run your tests repeatedly in a subprocess. After each run pytest waits until a file in your project changes and then re-runs the previously failing tests. This is repeated until all tests pass after which again a full run is performed. * Multi-Platform coverage: you can specify different Python interpreters or different platforms and run tests in parallel on all of them. Before running tests remotely, pytest efficiently “rsyncs” your program source code to the remote place. All test results are reported back and displayed to your local terminal. You may specify different Python versions and interpreters.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.5.0-gcccore-11.2.0 |
|
| 2.3.0-gcccore-10.3.0 |
|
python
Python is a programming language that lets you work more quickly and integrate your systems more effectively.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.13.5-gcccore-14.3.0 |
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| 3.12.3-gcccore-13.3.0 |
|
| 3.11.5-gcccore-13.2.0 |
|
| 3.11.3-gcccore-12.3.0 |
|
| 3.10.8-gcccore-12.2.0-bare |
|
| 3.10.8-gcccore-12.2.0 |
|
| 3.10.4-gcccore-11.3.0-bare |
|
| 3.10.4-gcccore-11.3.0 |
|
| 3.9.6-gcccore-13.2.0-bare |
|
| 3.9.6-gcccore-11.2.0-bare |
|
| 3.9.6-gcccore-11.2.0 |
|
| 3.9.6-bare |
|
| 3.9.6 |
|
| 3.9.5-gcccore-10.3.0-bare |
|
| 3.9.5-gcccore-10.3.0 |
|
| 3.8.6-gcccore-10.2.0 |
|
| 3.8.2-gcccore-9.3.0 |
|
| 3.7.4-gcccore-8.3.0 |
|
| 3.7.2-gcccore-8.3.0 |
|
| 3.7.2-gcccore-8.2.0 |
|
| 2.7.18-gcccore-11.3.0-bare |
|
| 2.7.18-gcccore-11.2.0-bare |
|
| 2.7.18-gcccore-11.2.0 |
|
| 2.7.18-gcccore-10.3.0-bare |
|
| 2.7.18-gcccore-10.3.0 |
|
| 2.7.18-gcccore-10.2.0 |
|
| 2.7.18-gcccore-9.3.0 |
|
| 2.7.16-gcccore-8.3.0 |
|
| 2.7.15-gcccore-8.3.0 |
|
| 2.7.15-gcccore-8.2.0 |
|
python-bundle-pypi
Bundle of Python packages from PyPI
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2025.07-gcccore-14.3.0 |
|
| 2023.10-gcccore-13.2.0 |
|
| 2023.06-gcccore-12.3.0 |
|
python-isal
Faster zlib and gzip compatible compression and decompression by providing python bindings for the isa-l library.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.11.1-gcccore-11.2.0 |
|
python-levenshtein
Python extension for computing string edit distances and similarities.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.12.1-foss-2021b |
|
python-topaz
Topaz - a pipeline for particle detection in cryo-electron microscopy images using convolutional neural networks trained from positive and unlabeled examples.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.2.4 |
|
pytorch
Tensors and Dynamic neural networks in Python with strong GPU acceleration. PyTorch is a deep learning framework that puts Python first.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.12.1-foss-2021a-cuda-11.3.1 |
|
| 1.10.0-foss-2021a-cuda-11.3.1 |
|
| 1.9.0-fosscuda-2020b-imkl |
|
pyyaml
PyYAML is a YAML parser and emitter for the Python programming language.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 6.0.2-gcccore-14.3.0 |
|
| 6.0.1-gcccore-13.2.0 |
|
| 6.0-gcccore-12.3.0 |
|
| 5.4.1-gcccore-11.2.0 |
|
| 5.4.1-gcccore-10.3.0 |
|
| 5.3.1-gcccore-10.2.0 |
|
pyzmq
Python bindings for ZeroMQ
| Versions | Environment loading command (via Lmod) |
|---|---|
| 27.1.0-gcccore-14.3.0 |
|
| 25.1.2-gcccore-13.2.0 |
|
| 25.1.1-gcccore-12.3.0 |
|
q5
Version control for Q. Version 5.06. EVB, FEP and LIE simulator.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 20170225-gompi-2021b |
|
q6
EVB, FEP and LIE simulator.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 20230414-gompi-2021b |
|
qca
Taking a hint from the similarly-named Java Cryptography Architecture, QCA aims to provide a straightforward and cross-platform crypto API, using Qt datatypes and conventions. QCA separates the API from the implementation, using plugins known as Providers. The advantage of this model is to allow applications to avoid linking to or explicitly depending on any particular cryptographic library. This allows one to easily change or upgrade crypto implementations without even needing to recompile the application! QCA should work everywhere Qt does, including Windows/Unix/MacOSX.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.3.5-gcccore-11.2.0 |
|
qchem
Q-Chem 6.3
| Versions | Environment loading command (via Lmod) |
|---|---|
| 6.3-smp |
|
| 6.2-smp |
|
| 6.1-smp |
|
| 6.0.1-smp |
|
| 5.1 |
|
qcint
libcint is an open source library for analytical Gaussian integrals.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 6.1.2-gfbf-2023a |
|
qd
Quad Double computation package
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.3.34 |
|
qdp-jit
QDP-JIT
| Versions | Environment loading command (via Lmod) |
|---|---|
| 82973e9-gcc-11.3.0-cuda-11.7.0 |
|
| 82973e9-foss-2022a-cuda-11.7.0 |
|
qgis
QGIS is a user friendly Open Source Geographic Information System (GIS)
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.28.1-foss-2021b |
|
qhull
Qhull computes the convex hull, Delaunay triangulation, Voronoi diagram, halfspace intersection about a point, furthest-site Delaunay triangulation, and furthest-site Voronoi diagram. The source code runs in 2-d, 3-d, 4-d, and higher dimensions. Qhull implements the Quickhull algorithm for computing the convex hull.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2020.2-gcccore-13.2.0 |
|
| 2020.2-gcccore-12.3.0 |
|
| 2020.2-gcccore-12.2.0 |
|
| 2020.2-gcccore-11.3.0 |
|
| 2020.2-gcccore-11.2.0 |
|
| 2020.2-gcccore-10.3.0 |
|
qiime2
QIIME is an open-source bioinformatics pipeline for performing microbiome analysis from raw DNA sequencing data.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2023.9 |
|
qmp
QMP implementation over MPICH and single node
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3010fef-gcc-11.3.0-cuda-11.7.0 |
|
| 3010fef-foss-2022a-cuda-11.7.0 |
|
qrupdate
qrupdate is a Fortran library for fast updates of QR and Cholesky decompositions.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.1.2-gcccore-11.2.0 |
|
qscintilla
QScintilla is a port to Qt of Neil Hodgson's Scintilla C++ editor control
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.11.6-gcccore-11.2.0 |
|
qsource
Version control for Q. Version 5.06. EVB, FEP and LIE simulator.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 20170225-gompi-2021b |
|
qt5
Qt is a comprehensive cross-platform C++ application framework.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 5.15.10-gcccore-12.3.0 |
|
| 5.15.5-gcccore-11.3.0 |
|
| 5.15.2-gcccore-11.2.0 |
|
| 5.15.2-gcccore-10.3.0 |
|
| 5.14.2-gcccore-10.2.0 |
|
qt5webkit
Qt Port of WebKit. WebKit is an open source web browser engine.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 5.212.0-alpha4-gcccore-11.2.0 |
|
qtkeychain
Platform-independent Qt API for storing passwords securely.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.13.2-gcccore-11.2.0 |
|
quantumespresso
Quantum ESPRESSO is an integrated suite of computer codes for electronic-structure calculations and materials modeling at the nanoscale. It is based on density-functional theory, plane waves, and pseudopotentials (both norm-conserving and ultrasoft).
| Versions | Environment loading command (via Lmod) |
|---|---|
| 7.3-intel-2021b |
|
| 7.2-intel-2021b |
|
| 7.1-intel-2021b |
|
| 7.0-intel-2021a |
|
| 7.0-foss-2021a |
|
| 6.7-intel-2021a |
|
| 6.7-foss-2020b |
|
quast
QUAST evaluates genome assemblies by computing various metrics. It works both with and without reference genomes. The tool accepts multiple assemblies, thus is suitable for comparison.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 5.2.0-foss-2022a |
|
quda
QUDA is a library for performing calculations in lattice QCD on graphics processing units (GPUs), leveraging NVIDIA's CUDA platform.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.1.0-gcc-11.3.0-e23cd7e |
|
quickvina-w
Accurately speed up AutoDock Vina, the famous molecular docking tool.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.2-gcc-11.2.0-b6adc70 |
|
qutip
QuTiP is open-source software for simulating the dynamics of open quantum systems.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.7.1-foss-2021b |
|
qwt
The Qwt library contains GUI Components and utility classes which are primarily useful for programs with a technical background.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 6.3.0-gcccore-12.3.0 |
|
| 6.2.0-gcccore-11.2.0 |
|
| 6.2.0-gcccore-10.3.0 |
|
r
R is a free software environment for statistical computing and graphics.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.4.2-foss-2023a |
|
| 4.3.2-foss-2023a |
|
| 4.2.0-foss-2021b |
|
| 4.1.2-foss-2021b |
|
randfold
Minimum free energy of folding randomization test software
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.0.1-foss-2021b |
|
ranger-fm
ranger is a console file manager with VI key bindings.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.9.3 |
|
rapidjson
A fast JSON parser/generator for C++ with both SAX/DOM style API
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.1.0-gcccore-11.2.0 |
|
| 1.1.0-gcccore-10.3.0 |
|
raspa2
RASPA is a software package for simulating adsorption and diffusion of molecules in flexible nanoporous materials.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.0.47-foss-2021b |
|
rclone
Rclone is a command line program to sync files and directories to and from a variety of online storage services
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.67.0 |
|
| 1.60.1 |
|
| 1.57.0 |
|
rcorrector
Rcorrector(RNA-seq error CORRECTOR) is a kmer-based error correction method for RNA-seq data.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.0.4-foss-2021b |
|
rdkit
RDKit is a collection of cheminformatics and machine-learning software written in C++ and Python.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2022.03.5-foss-2021b |
|
| 2021.03.4-foss-2021a |
|
rdock
A Fast, Versatile and Open Source Program for Docking Ligands to Proteins and Nucleic Acids
| Versions | Environment loading command (via Lmod) |
|---|---|
| 24.03.192-gcc-12.3.0 |
|
re2
RE2 is a fast, safe, thread-friendly alternative to backtracking regular expression engines like those used in PCRE, Perl, and Python. It is a C++ library.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2023-08-01-gcccore-12.3.0 |
|
| 2022-02-01-gcccore-10.3.0 |
|
re2c
re2c is a free and open-source lexer generator for C and C++. Its main goal is generating fast lexers: at least as fast as their reasonably optimized hand-coded counterparts. Instead of using traditional table-driven approach, re2c encodes the generated finite state automata directly in the form of conditional jumps and comparisons.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.1-gcccore-12.3.0 |
|
| 2.2-gcccore-11.3.0 |
|
| 2.2-gcccore-11.2.0 |
|
| 2.1.1-gcccore-10.3.0 |
|
| 2.0.3-gcccore-10.2.0 |
|
reframe
ReFrame is a framework for writing regression tests for HPC systems.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.3.3 |
|
relion
RELION (for REgularised LIkelihood OptimisatioN, pronounce rely-on) is a stand-alone computer program that employs an empirical Bayesian approach to refinement of (multiple) 3D reconstructions or 2D class averages in electron cryo-microscopy (cryo-EM).
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.0.0-foss-2021b-cuda-11.6.0 |
|
| 3.1.3-foss-2021b-cuda-11.4.1 |
|
| 3.1.2-intelcuda-2020a |
|
rldock
RLDOCK is a open source program for predicting the RNA-ligand binding site and binding pose.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2d506ba-gcc-11.2.0 |
|
rnaeditingindexer
No description available
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4d79d77-git |
|
rocky
Ansys Rocky version: 2023 R2
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2023R2 |
|
| 2021R2 |
|
root
The ROOT system provides a set of OO frameworks with all the functionality needed to handle and analyze large amounts of data in a very efficient way.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 6.32.02-foss-2023a |
|
| 6.24.06-foss-2021b |
|
| 6.20.08-foss-2021b |
|
rosetta
Rosetta is the premier software suite for modeling macromolecular structures. As a flexible, multi-purpose application, it includes tools for structure prediction, design, and remodeling of proteins and nucleic acids.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.13-intel-2021a-mpi |
|
| 3.12 |
|
rsem
RNA-Seq by Expectation-Maximization
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.3.3-foss-2021b |
|
| 1.3.3-foss-2021a |
|
rstudio-server
This is the RStudio Server version. RStudio is a set of integrated tools designed to help you be more productive with R. The server can be started with: rserver --server-daemonize=0 --www-port 8787 --rsession-which-r=$(which R)
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2022.12.0+353-foss-2021b-java-11-r-4.2.0 |
|
ruamel.yaml
ruamel.yaml is a YAML 1.2 loader/dumper package for Python.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.17.32-gcccore-12.3.0 |
|
ruby
Ruby is a dynamic, open source programming language with a focus on simplicity and productivity. It has an elegant syntax that is natural to read and easy to write.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.0.1-gcccore-11.2.0 |
|
| 3.0.1-gcccore-10.3.0 |
|
rust
Rust is a systems programming language that runs blazingly fast, prevents segfaults, and guarantees thread safety.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.88.0-gcccore-14.3.0 |
|
| 1.88.0-gcccore-13.3.0 |
|
| 1.83.0-gcccore-13.3.0 |
|
| 1.78.0-gcccore-13.3.0 |
|
| 1.76.0-gcccore-13.2.0 |
|
| 1.75.0-gcccore-12.3.0 |
|
| 1.73.0-gcccore-13.2.0 |
|
| 1.70.0-gcccore-12.3.0 |
|
| 1.65.0-gcccore-12.2.0 |
|
| 1.63.0-gcccore-10.3.0 |
|
| 1.60.0-gcccore-11.3.0 |
|
| 1.54.0-gcccore-11.2.0 |
|
| 1.54.0 |
|
| 1.52.1-gcccore-10.3.0 |
|
saga
System for Automated Geoscientific Analyses
| Versions | Environment loading command (via Lmod) |
|---|---|
| 9.6.2-foss-2023a |
|
| 8.5.1-gcc-11.2.0 |
|
sagemath
Free open-source mathematics software system licensed under the GPL
| Versions | Environment loading command (via Lmod) |
|---|---|
| 9.5-foss-2021b |
|
salmon
Salmon is a wicked-fast program to produce a highly-accurate, transcript-level quantification estimates from RNA-seq data.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.5.2-gompi-2021b |
|
| 1.5.2-gompi-2021a |
|
| 1.4.0-gcc-11.2.0 |
|
| 0.12.0 |
|
| 0.8.2 |
|
samtools
SAM Tools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.16.1-gcc-11.3.0 |
|
| 1.14-gcc-11.2.0 |
|
| 1.13-intel-compilers-2021.4.0 |
|
| 1.13-gcc-11.2.0 |
|
| 1.13-gcc-10.3.0 |
|
| 1.11-gcc-10.2.0 |
|
| 1.8-gcc-11.2.0 |
|
sbcl
Steel Bank Common Lisp (SBCL) is a high performance Common Lisp compiler. It is open source / free software, with a permissive license. In addition to the compiler and runtime system for ANSI Common Lisp, it provides an interactive environment including a debugger, a statistical profiler, a code coverage tool, and many other extensions.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.5.5 |
|
scalapack
The ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines redesigned for distributed memory MIMD parallel computers.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.2.0-gompi-2023b-fb |
|
| 2.2.0-gompi-2023a-fb |
|
| 2.2.0-gompi-2022b-fb |
|
| 2.2.0-gompi-2022a-fb |
|
| 2.1.0-gompic-2020b |
|
| 2.1.0-gompi-2021b-fb |
|
| 2.1.0-gompi-2021a-fb |
|
| 2.1.0-gompi-2021.07-fb |
|
| 2.1.0-gompi-2020b-bf |
|
| 2.1.0-gompi-2020b |
|
| 2.0.2-gompi-2019b |
|
schrodinger
No description available
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2016.4 |
|
scikit-build
Scikit-Build, or skbuild, is an improved build system generator for CPython C/C++/Fortran/Cython extensions.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.18.1-gcccore-14.3.0 |
|
| 0.17.6-gcccore-13.3.0 |
|
| 0.17.6-gcccore-13.2.0 |
|
| 0.17.6-gcccore-12.3.0 |
|
| 0.15.0-gcccore-11.3.0 |
|
| 0.11.1-gcccore-11.2.0 |
|
| 0.11.1-fosscuda-2020b |
|
scikit-build-core
Scikit-build-core is a complete ground-up rewrite of scikit-build on top of modern packaging APIs. It provides a bridge between CMake and the Python build system, allowing you to make Python modules with CMake.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.11.5-gcccore-14.3.0 |
|
| 0.5.0-gcccore-12.3.0 |
|
scikit-learn
Scikit-learn integrates machine learning algorithms in the tightly-knit scientific Python world, building upon numpy, scipy, and matplotlib. As a machine-learning module, it provides versatile tools for data mining and analysis in any field of science and engineering. It strives to be simple and efficient, accessible to everybody, and reusable in various contexts.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.4.2-gfbf-2023a |
|
scipy-bundle
Bundle of Python packages for scientific software
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2023.11-gfbf-2023b |
|
| 2023.07-iimkl-2023a |
|
| 2023.07-gfbf-2023a |
|
| 2023.02-gfbf-2022b |
|
| 2022.05-intel-2022a |
|
| 2022.05-foss-2022a |
|
| 2021.10-intel-2021b |
|
| 2021.10-foss-2021b-python-2.7.18 |
|
| 2021.10-foss-2021b |
|
| 2021.05-intel-2021a |
|
| 2021.05-foss-2021a |
|
| 2020.11-intel-2020b |
|
| 2020.11-fosscuda-2020b |
|
| 2020.11-foss-2020b |
|
| 2020.03-intel-2020b-python-2.7.18 |
|
| 2020.03-intel-2020a-python-3.8.2 |
|
| 2019.10-foss-2019b-python-3.7.4 |
|
| 2019.03-foss-2019b |
|
scons
SCons is a software construction tool.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.2.0-gcccore-11.2.0 |
|
| 4.1.0.post1-gcccore-10.3.0 |
|
| 4.1.0.post1-foss-2021a |
|
score-p
The Score-P measurement infrastructure is a highly scalable and easy-to-use tool suite for profiling, event tracing, and online analysis of HPC applications.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 8.0-gompi-2021b |
|
scotch
Software package and libraries for sequential and parallel graph partitioning, static mapping, and sparse matrix block ordering, and sequential mesh and hypergraph partitioning.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 7.0.3-gompi-2023a |
|
| 7.0.1-gompi-2022a |
|
| 7.0.1-gompi-2021b |
|
| 6.1.2-iimpi-2021b |
|
| 6.1.2-gompi-2021b |
|
| 6.1.0-iimpi-2021a |
|
| 6.1.0-gompi-2021a |
|
| 6.0.9-gompi-2019b |
|
sdl2
SDL: Simple DirectMedia Layer, a cross-platform multimedia library
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.28.2-gcccore-12.3.0 |
|
| 2.0.22-gcccore-11.3.0 |
|
| 2.0.20-gcccore-11.2.0 |
|
| 2.0.20 |
|
| 2.0.14-gcccore-10.3.0 |
|
| 2.0.14-gcccore-10.2.0 |
|
seaborn
Seaborn is a Python visualization library based on matplotlib. It provides a high-level interface for drawing attractive statistical graphics.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.13.2-gfbf-2023a |
|
sentencepiece
Unsupervised text tokenizer for Neural Network-based text generation.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.1.96-gcc-10.3.0 |
|
sepp
SATe-enabled Phylogenetic Placement - addresses the problem of phylogenetic placement of short reads into reference alignments and trees.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.5.1-foss-2021b |
|
| 4.4.0-foss-2020b |
|
seqkit
SeqKit - a cross-platform and ultrafast toolkit for FASTA/Q file manipulation
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.3.1 |
|
seqtk
Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format. It seamlessly parses both FASTA and FASTQ files which can also be optionally compressed by gzip.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.3-gcc-11.2.0 |
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serenity
Serenity is a quantum chemistry code originally developed in the group of Johannes Neugebauer at the University of Münster.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.6.1-intel-2021b |
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serestipy
Serestipy is a Python API for the quantum chemistry code serestipy originally developed in the group of Johannes Neugebauer at the WWU Munster. whatis([==[Homepage: https://github.com/qcserestipy/serestipy
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.1.2-alpha-intel-2021b |
|
setuptools-rust
setuptools-rust is a plugin for setuptools to build Rust Python extensions implemented with PyO3 or rust-cpython.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.11.0-gcccore-14.3.0 |
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| 1.8.0-gcccore-13.3.0 |
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| 1.8.0-gcccore-13.2.0 |
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| 1.6.0-gcccore-12.3.0 |
|
shengbte
A solver for the Boltzmann transport equation for phonons.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.2.0-foss-2021b |
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shfmt
A shell parser, formatter, and interpreter.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.12.0 |
|
shieldhit
SHIELD-HIT12A is a Monte Carlo particle transport program which is modified for proton and heavy ion particle therapy research
| Versions | Environment loading command (via Lmod) |
|---|---|
| current |
|
siesta
SIESTA is both a method and its computer program implementation, to perform efficient electronic structure calculations and ab initio molecular dynamics simulations of molecules and solids.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 5.4.0-foss-2023a |
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| 5.2.0-intel-2021b |
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| 5.0.2-intel-2021b |
|
| 4.1.5-intel-2021b-oneapi |
|
| 4.1.5-intel-2021b |
|
| 4.1.5-foss-2021b |
|
| 4.1.5-foss-2021a |
|
simbody
Simbody is useful for internal coordinate and coarse grained molecule modeling, large scale mechanical models like skeletons, and anything else that can be modeled as bodies interconnected by joints, acted upon by forces, and restricted by constraints.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.7-foss-2021b |
|
simple-dftd3
Reimplementation of the D3 dispersion correction. The s-dftd3 project aims to provide a user-friendly and uniform interface to the D3 dispersion model and for the calculation of DFT-D3 dispersion corrections.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.2.1-gfbf-2023a |
|
simpson
SIMPSON is a general-purpose software package for simulation virtually all kinds of solid-state NMR experiments. Just set up the spin system, pulse sequence, and run the simulation.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.2.2-intel-2021b-ea65a09 |
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| 4.2.2-intel-2021b |
|
sionlib
SIONlib is a scalable I/O library for parallel access to task-local files. The library not only supports writing and reading binary data to or from several thousands of processors into a single or a small number of physical files, but also provides global open and close functions to access SIONlib files in parallel. This package provides a stripped-down installation of SIONlib for use with performance tools (e.g., Score-P), with renamed symbols to avoid conflicts when an application using SIONlib itself is linked against a tool requiring a different SIONlib version.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.7.7-gcccore-11.2.0-tools |
|
slepc
SLEPc (Scalable Library for Eigenvalue Problem Computations) is a software library for the solution of large scale sparse eigenvalue problems on parallel computers. It is an extension of PETSc and can be used for either standard or generalized eigenproblems, with real or complex arithmetic. It can also be used for computing a partial SVD of a large, sparse, rectangular matrix, and to solve quadratic eigenvalue problems.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.18.2-foss-2021b |
|
snappy
Snappy is a compression/decompression library. It does not aim for maximum compression, or compatibility with any other compression library; instead, it aims for very high speeds and reasonable compression.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.1.10-gcccore-12.3.0 |
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| 1.1.9-gcccore-11.3.0 |
|
| 1.1.9-gcccore-11.2.0 |
|
| 1.1.8-gcccore-10.3.0 |
|
| 1.1.8-gcccore-10.2.0 |
|
soci
SOCI is a database access library for C++ that makes the illusion of embedding SQL queries in the regular C++ code, staying entirely within the Standard C++.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.0.3-gcc-11.2.0 |
|
sonic
Sonic is a simple algorithm for speeding up or slowing down speech. However, it's optimized for speed ups of over 2X, unlike previous algorithms for changing speech rate. The Sonic library is a very simple ANSI C library that is designed to easily be integrated into streaming voice applications, like TTS back ends.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 20180202-gfbf-2023a |
|
sox
Sound eXchange, the Swiss Army knife of audio manipulation
| Versions | Environment loading command (via Lmod) |
|---|---|
| 14.4.2-gcccore-12.3.0 |
|
| 14.4.2-gcccore-11.3.0 |
|
spades
Genome assembler for single-cell and isolates data sets
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.15.3-gcc-11.2.0 |
|
spark
Spark is Hadoop MapReduce done in memory
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.3.2-hadoop-3.2-java-11 |
|
sparsehash
An extremely memory-efficient hash_map implementation. 2 bits/entry overhead! The SparseHash library contains several hash-map implementations, including implementations that optimize for space or speed.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.0.4-gcccore-11.3.0 |
|
| 2.0.4-gcccore-11.2.0 |
|
spdlog
Very fast, header-only/compiled, C++ logging library.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.11.0-gcccore-11.3.0 |
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| 1.10.0-gcccore-11.2.0 |
|
speex
Speex is an Open Source/Free Software patent-free audio compression format designed for speech.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.2.1-gcccore-10.3.0 |
|
spglib
Spglib is a C library for finding and handling crystal symmetries.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.5.0-gcccore-12.3.0 |
|
| 1.16.2-gcccore-11.2.0 |
|
| 1.16.1-gcccore-10.3.0 |
|
spglib-python
Spglib for Python. Spglib is a library for finding and handling crystal symmetries written in C.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.1.0-gfbf-2023a |
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| 2.0.0-foss-2022a |
|
| 1.16.3-intel-2021b |
|
| 1.16.1-intel-2021b |
|
| 1.16.1-foss-2021a |
|
spooles
SPOOLES is a library for solving sparse real and complex linear systems of equations, written in the C language using object oriented design.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.2-gompi-2021b |
|
sqlalchemy
SQLAlchemy is the Python SQL toolkit and Object Relational Mapper that gives application developers the full power and flexibility of SQL. SQLAlchemy provides a full suite of well known enterprise-level persistence patterns, designed for efficient and high-performing database access, adapted into a simple and Pythonic domain language.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.0.29-gcccore-13.2.0 |
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| 2.0.25-gcccore-12.3.0 |
|
| 1.4.46-gcccore-12.3.0 |
|
| 1.4.46-gcccore-11.2.0-python-3.9.6 |
|
sqlite
SQLite: SQL Database Engine in a C Library
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.50.1-gcccore-14.3.0 |
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| 3.45.3-gcccore-13.3.0 |
|
| 3.43.1-gcccore-13.2.0 |
|
| 3.42.0-gcccore-12.3.0 |
|
| 3.39.4-gcccore-12.2.0 |
|
| 3.38.3-gcccore-11.3.0 |
|
| 3.36-gcccore-11.2.0 |
|
| 3.36 |
|
| 3.35.4-gcccore-10.3.0 |
|
| 3.33.0-gcccore-10.2.0 |
|
| 3.31.1-gcccore-9.3.0 |
|
| 3.29.0-gcccore-8.3.0 |
|
| 3.27.2-gcccore-8.2.0 |
|
sra-toolkit
The SRA Toolkit, and the source-code SRA System Development Kit (SDK), will allow you to programmatically access data housed within SRA and convert it from the SRA format
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.0.0-centos_linux64 |
|
stacks
Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and conducting population genomics and phylogeography.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.65-foss-2022a |
|
| 2.62-foss-2022a |
|
star
STAR aligns RNA-seq reads to a reference genome using uncompressed suffix arrays.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.7.9a-gcc-11.2.0 |
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| 2.7.8a-gcc-10.3.0 |
|
star-fusion
STAR-Fusion
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.11.0 |
|
| 1.9.1 |
|
statsmodels
Statsmodels is a Python module that allows users to explore data, estimate statistical models, and perform statistical tests.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.13.1-intel-2021b |
|
suitesparse
SuiteSparse is a collection of libraries manipulate sparse matrices.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 5.10.1-intel-2021b-metis-5.1.0 |
|
| 5.10.1-foss-2021b-metis-5.1.0 |
|
| 5.8.1-foss-2020b-metis-5.1.0 |
|
| 5.6.0-foss-2019b-metis-5.1.0 |
|
sundials
SUNDIALS: SUite of Nonlinear and DIfferential/ALgebraic Equation Solvers
| Versions | Environment loading command (via Lmod) |
|---|---|
| 6.4.0-intel-2021b |
|
| 6.3.0-intel-2021b |
|
| 5.7.0-intel-2021b |
|
superlu_dist
SuperLU is a general purpose library for the direct solution of large, sparse, nonsymmetric systems of linear equations on high performance machines.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 8.1.0-intel-2021b |
|
svt-av1
Scalable Video Technology for AV1 (SVT-AV1 Encoder and Decoder)
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.6.0-gcccore-11.3.0 |
|
| 1.4.1-gcccore-11.3.0 |
|
swig
SWIG is a software development tool that connects programs written in C and C++ with a variety of high-level programming languages.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.1.1-gcccore-12.3.0 |
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| 4.0.2-gcccore-11.3.0 |
|
| 4.0.2-gcccore-11.2.0 |
|
| 4.0.2-gcccore-10.3.0 |
|
| 4.0.1-gcccore-8.3.0 |
|
| 3.0.12-gcccore-11.2.0 |
|
| 3.0.12-gcccore-8.3.0 |
|
| 3.0.12-foss-2021b-python-3.9.6 |
|
sympy
SymPy is a Python library for symbolic mathematics. It aims to become a full-featured computer algebra system (CAS) while keeping the code as simple as possible in order to be comprehensible and easily extensible. SymPy is written entirely in Python and does not require any external libraries.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.9-intel-2021b |
|
| 1.9-foss-2021b |
|
synapseclient
The synapseclient package provides an interface to Synapse, a collaborative, open-source research platform that allows teams to share data, track analyses, and collaborate, providing support for: - integrated presentation of data, code and text - fine grained access control - provenance tracking
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.7.2-foss-2022b-python-3.10.8 |
|
| 2.7.2-foss-2022a-python-3.10.4 |
|
szip
Szip compression software, providing lossless compression of scientific data
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.1.1-gcccore-13.2.0 |
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| 2.1.1-gcccore-12.3.0 |
|
| 2.1.1-gcccore-12.2.0 |
|
| 2.1.1-gcccore-11.3.0 |
|
| 2.1.1-gcccore-11.2.0 |
|
| 2.1.1-gcccore-10.3.0 |
|
| 2.1.1-gcccore-10.2.0 |
|
| 2.1.1-gcccore-9.3.0 |
|
| 2.1.1-gcccore-8.3.0 |
|
tabix
Generic indexer for TAB-delimited genome position files
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.2.6-gcccore-11.2.0 |
|
tal_sh
TAL-SH: Tensor Algebra Library for Shared Memory Computers: Nodes equipped with multicore CPU, NVIDIA GPU, AMD GPU, and Intel Xeon Phi. The library implements basic tensor algebra operations with interfaces to C, C++11, and Fortran 90+.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3cefc21-intel-2021b |
|
tar
GNU Tar provides the ability to create tar archives, as well as various other kinds of manipulation.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.27.1-lustre |
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| 1.27.1-gcccore-11.2.0 |
|
tau
TAU (Tuning and Analysis Utilities) is capable of gathering performance information through instrumentation of functions, methods, basic blocks, and statements as well as event-based sampling. All C++ language features are supported including templates and namespaces. The API also provides selection of profiling groups for organizing and controlling instrumentation. The instrumentation can be inserted in the source code using an automatic instrumentor tool based on the Program Database Toolkit (PDT), dynamically using DyninstAPI, at runtime in the Java Virtual Machine, or manually using the instrumentation API.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.32-intel-2021b |
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| 2.32-foss-2021b |
|
tbb
Intel(R) Threading Building Blocks (Intel(R) TBB) lets you easily write parallel C++ programs that take full advantage of multicore performance, that are portable, composable and have future-proof scalability.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2021.5.0-gcccore-11.3.0 |
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| 2021.4.0-gcccore-11.2.0 |
|
| 2020.3-gcccore-11.3.0 |
|
| 2020.3-gcccore-11.2.0 |
|
| 2020.3-gcccore-10.3.0 |
|
| 2020.3-gcccore-10.2.0 |
|
tcl
Tcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, suitable for a very wide range of uses, including web and desktop applications, networking, administration, testing and many more.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 9.0.1-gcccore-14.3.0 |
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| 8.6.14-gcccore-13.3.0 |
|
| 8.6.13-gcccore-13.2.0 |
|
| 8.6.13-gcccore-12.3.0 |
|
| 8.6.12-gcccore-12.2.0 |
|
| 8.6.12-gcccore-11.3.0 |
|
| 8.6.11-gcccore-11.2.0 |
|
| 8.6.11-gcccore-10.3.0 |
|
| 8.6.11 |
|
| 8.6.10-gcccore-10.2.0 |
|
| 8.6.10-gcccore-9.3.0 |
|
| 8.6.9-gcccore-8.3.0 |
|
| 8.6.9-gcccore-8.2.0 |
|
tcsh
Tcsh is an enhanced, but completely compatible version of the Berkeley UNIX C shell (csh). It is a command language interpreter usable both as an interactive login shell and a shell script command processor. It includes a command-line editor, programmable word completion, spelling correction, a history mechanism, job control and a C-like syntax.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 6.24.10-gcccore-12.3.0 |
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| 6.24.01-gcccore-11.2.0 |
|
| 6.24.01 |
|
| 6.22.04-gcccore-10.3.0 |
|
| 6.22.03-gcccore-10.3.0 |
|
| 6.22.02-gcccore-8.3.0 |
|
tedna
Tedna is a simple transposable elements assembler. It reads one or two FASTQ files, representing (possibly paired-end) DNA-Seq data, and produces a FASTA file with the transposable elements it has assembled.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.3.1-gcc-11.2.0 |
|
tensorflow
An open-source software library for Machine Intelligence
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.8.0-fosscuda-2020b |
|
| 2.7.1-foss-2021b-cuda-11.4.1 |
|
| 2.7.0-fosscuda-2020b |
|
| 2.5.3-foss-2021a-cuda-11.3.1 |
|
| 2.5.0-fosscuda-2020b |
|
| 2.4.1-fosscuda-2020b |
|
terachem
TeraChem is general purpose quantum chemistry software designed to run on NVIDIA GPU architectures under a 64-bit Linux operating system.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.95 |
|
test-drive
This project offers a lightweight, procedural unit testing framework based on nothing but standard Fortran.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.5.0-gcc-12.3.0 |
|
texinfo
Texinfo is the official documentation format of the GNU project.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 6.7-gcccore-11.2.0 |
|
texlive
TeX is a typesetting language. Instead of visually formatting your text, you enter your manuscript text intertwined with TeX commands in a plain text file. You then run TeX to produce formatted output, such as a PDF file. Thus, in contrast to standard word processors, your document is a separate file that does not pretend to be a representation of the final typeset output, and so can be easily edited and manipulated.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 20230313-gcc-11.2.0 |
|
theodore
The TheoDORE (Theoretical Density, Orbital Relaxation and Exciton analysis) package is a program suite for the analysis of excited states obtained from quantum chemical excited state calculations.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.1.1-foss-2021b |
|
| 3.0-foss-2021b |
|
time
The `time' command runs another program, then displays information about the resources used by that program, collected by the system while the program was running.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.9-gcccore-10.3.0 |
|
| 1.9-gcccore-8.3.0 |
|
timm
PyTorch Image Models (timm) is a collection of image models, layers, utilities, optimizers, schedulers, data-loaders / augmentations, and reference training / validation scripts that aim to pull together a wide variety of SOTA models with ability to reproduce ImageNet training results.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.6.7-foss-2021a-cuda-11.3.1-pytorch-1.10.0-tensorflow-2.5.3 |
|
tinker-hp
Tinker-HP: High Performance Massively Parallel Evolution of Tinker
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.2-nvhpc-22.3 |
|
| 1.2-iomkl-2021b-debug |
|
| 1.2-iomkl-2021b-18f554a |
|
| 1.2-iomkl-2021b-3af68bd |
|
| 1.2-iomkl-2021b |
|
tinker9
Tinker9 is a complete rewrite and extension of the canonical Tinker software, currently Tinker8.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.3.1-nvhpc-22.7-65d3279 |
|
tk
Tk is an open source, cross-platform widget toolchain that provides a library of basic elements for building a graphical user interface (GUI) in many different programming languages.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 8.6.13-gcccore-13.2.0 |
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| 8.6.13-gcccore-12.3.0 |
|
| 8.6.12-gcccore-12.2.0 |
|
| 8.6.12-gcccore-11.3.0 |
|
| 8.6.11-gcccore-11.2.0 |
|
| 8.6.11-gcccore-10.3.0 |
|
| 8.6.10-gcccore-10.2.0 |
|
| 8.6.9-gcccore-8.3.0 |
|
tkinter
Tkinter module, built with the Python buildsystem
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.11.5-gcccore-13.2.0 |
|
| 3.11.3-gcccore-12.3.0 |
|
| 3.10.8-gcccore-12.2.0 |
|
| 3.10.4-gcccore-11.3.0 |
|
| 3.9.6-gcccore-11.2.0 |
|
| 3.9.5-gcccore-10.3.0 |
|
| 3.8.6-gcccore-10.2.0 |
|
| 3.7.4-gcccore-8.3.0 |
|
| 2.7.18-gcccore-11.2.0 |
|
tmux
tmux is a terminal multiplexer: it enables a number of terminals to be created, accessed, and controlled from a single screen. tmux may be detached from a screen and continue running in the background, then later reattached.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.4 |
|
toml-fortran
TOML parser for Fortran projects
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.4.2-gcc-12.3.0 |
|
tonto
Tonto is a free library dedicated to quantum crystallography and quantum chemistry. It can refine crystal structures using ab initio wavefunctions. It can also fit electronic wavefunctions to X-ray diffraction data.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 17.04-foss-2019b |
|
torch-dftd
MACE provides fast and accurate machine learning interatomic potentials with higher order equivariant message passing.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.5.0 |
|
torchani
TorchANI is a PyTorch implementation of ANI (http://pubs.rsc.org/en/Content/ArticleLanding/2017/SC/C6SC05720A#!divAbstract), created and maintained by the Roitberg group (https://roitberg.chem.ufl.edu/).
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.2.4 |
|
torchtext
Data loaders and abstractions for text and NLP
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.13.0-foss-2021a-pytorch-1.12.1-cuda-11.3.1 |
|
torchvision
Datasets, Transforms and Models specific to Computer Vision
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.11.1-foss-2021a-cuda-11.3.1 |
|
tornado
Tornado is a Python web framework and asynchronous networking library.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 6.5.1-gcccore-14.3.0 |
|
| 6.4-gcccore-13.2.0 |
|
| 6.3.2-gcccore-12.3.0 |
|
tqdm
A fast, extensible progress bar for Python and CLI
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.64.1-gcccore-12.2.0 |
|
| 4.62.3-gcccore-11.2.0 |
|
| 4.61.2-gcccore-10.3.0 |
|
| 4.60.0-gcccore-10.2.0 |
|
| 4.47.0-gcccore-9.3.0 |
|
transformers
State-of-the-art Natural Language Processing for PyTorch and TensorFlow 2.0
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.2.1-intel-2020a-python-3.8.2 |
|
| 4.2.1-fosscuda-2020b-python-3.8.6 |
|
transrate
Command-line tools used by transrate for processing bam files.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.0.3 |
|
travis
TRAVIS is a free tool for analyzing and visualizing trajectories from all kinds of Molecular Dynamics or Monte Carlo simulations. It is intended to be easy to install and easy to use.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 220729-gcc-13.2.0 |
|
trilinos
The Trilinos Project is an effort to develop algorithms and enabling technologies within an object-oriented software framework for the solution of large-scale, complex multi-physics engineering and scientific problems. A unique design feature of Trilinos is its focus on packages.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 13.4.0-foss-2019b-python-3.7.4 |
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| 12.12.1-foss-2019b-python-3.7.4 |
|
trimmomatic
Trimmomatic performs a variety of useful trimming tasks for illumina paired-end and single ended data.The selection of trimming steps and their associated parameters are supplied on the command line.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.39-java-17 |
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trinity
Trinity represents a novel method for the efficient and robust de novo reconstruction of transcriptomes from RNA-Seq data. Trinity combines three independent software modules: Inchworm, Chrysalis, and Butterfly, applied sequentially to process large volumes of RNA-Seq reads.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.15.1-foss-2021b |
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| 2.14.0-foss-2021b-python-3.9.6 |
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| 2.13.1-foss-2021a-python-3.9.5 |
|
turbomole
TURBOMOLE v 7.8.1 quantum chemistry chemistry package, SMP version
| Versions | Environment loading command (via Lmod) |
|---|---|
| 7.9-smp |
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| 7.8.1-smp |
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| 7.8.1-mpi |
|
| 7.8-smp |
|
| 7.8-mpi |
|
| 7.7.1-smp |
|
| 7.7.1-mpi |
|
| 7.5.1-smp |
|
| 7.5.1-mpi |
|
turbovnc
TurboVNC is a derivative of VNC (Virtual Network Computing) that is tuned to provide peak performance for 3D and video workloads.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.2.6-gcccore-11.2.0 |
|
| 2.2.6-gcccore-10.3.0 |
|
| 2.2.6 |
|
typing-extensions
Typing Extensions - Backported and Experimental Type Hints for Python
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.10.0-gcccore-13.2.0 |
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| 4.9.0-gcccore-12.3.0 |
|
| 3.10.0.2-gcccore-11.2.0 |
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| 3.10.0.0-gcccore-10.3.0 |
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| 3.7.4.3-gcccore-10.2.0 |
|
ucc
UCC (Unified Collective Communication) is a collective communication operations API and library that is flexible, complete, and feature-rich for current and emerging programming models and runtimes.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.3.0-gcccore-13.3.0 |
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| 1.2.0-gcccore-13.2.0 |
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| 1.2.0-gcccore-12.3.0 |
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| 1.1.0-gcccore-12.2.0 |
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| 1.0.0-gcccore-11.3.0 |
|
ucc-cuda
UCC (Unified Collective Communication) is a collective communication operations API and library that is flexible, complete, and feature-rich for current and emerging programming models and runtimes. This module adds the UCC CUDA support.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.0.0-gcccore-11.3.0-cuda-11.7.0 |
|
ucx
Unified Communication X An open-source production grade communication framework for data centric and high-performance applications
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.16.0-gcccore-13.3.0 |
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| 1.15.0-gcccore-13.2.0 |
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| 1.14.1-gcccore-12.3.0 |
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| 1.13.1-gcccore-12.2.0 |
|
| 1.13.0-gcccore-11.3.0 |
|
| 1.12.1-gcccore-11.3.0 |
|
| 1.12.1-gcccore-11.2.0 |
|
| 1.11.2-gcccore-11.2.0 |
|
| 1.11.2 |
|
| 1.11.0-gcccore-11.2.0 |
|
| 1.10.0-gcccore-10.3.0 |
|
| 1.10.0-gcccore-10.2.0 |
|
| 1.9.0-gcccore-10.2.0-cuda-11.1.1 |
|
| 1.9.0-gcccore-10.2.0 |
|
| 1.9.0--cuda-11.1.1-gcccore-10.2.0 |
|
| 1.8.0-gcccore-9.3.0 |
|
ucx-cuda
Unified Communication X An open-source production grade communication framework for data centric and high-performance applications This module adds the UCX CUDA support.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.15.0-gcccore-13.2.0-cuda-12.4.0 |
|
| 1.14.1-gcccore-12.3.0-cuda-12.1.1 |
|
| 1.12.1-gcccore-11.3.0-cuda-11.7.0 |
|
| 1.12.1-gcccore-11.2.0-cuda-11.6.0 |
|
| 1.12.1-gcccore-11.2.0-cuda-11.4.1 |
|
| 1.11.2-gcccore-11.2.0-cuda-11.4.1 |
|
| 1.10.0-gcccore-10.3.0-cuda-11.3.1 |
|
udunits
UDUNITS supports conversion of unit specifications between formatted and binary forms, arithmetic manipulation of units, and conversion of values between compatible scales of measurement.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.2.28-gcccore-12.3.0 |
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| 2.2.28-gcccore-11.3.0 |
|
| 2.2.28-gcccore-11.2.0 |
|
| 2.2.28-gcccore-10.3.0 |
|
| 2.2.26-gcccore-10.2.0 |
|
uintah
The Uintah software suite is a set of libraries and applications for simulating and analyzing complex chemical and physical reactions.
| Versions | Environment loading command (via Lmod) |
|---|---|
| fb07d58-foss-2023a |
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| fb07d58-foss-2021b |
|
umi-tools
Tools for handling Unique Molecular Identifiers in NGS data sets
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.1.2-foss-2021b-python-3.9.6 |
|
uncertainties
Transparent calculations with uncertainties on the quantities involved (aka error propagation); fast calculation of derivatives
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.1.7-foss-2023a |
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| 3.1.7-foss-2021b |
|
unzip
UnZip is an extraction utility for archives compressed in .zip format (also called "zipfiles
| Versions | Environment loading command (via Lmod) |
|---|---|
| 6.0-gcccore-14.3.0 |
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| 6.0-gcccore-13.3.0 |
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| 6.0-gcccore-13.2.0 |
|
| 6.0-gcccore-12.3.0 |
|
| 6.0-gcccore-12.2.0 |
|
| 6.0-gcccore-11.3.0 |
|
| 6.0-gcccore-11.2.0 |
|
| 6.0-gcccore-10.3.0 |
|
| 6.0-gcccore-10.2.0 |
|
| 6.0-gcccore-9.3.0 |
|
| 6.0 |
|
utf8proc
utf8proc is a small, clean C library that provides Unicode normalization, case-folding, and other operations for data in the UTF-8 encoding.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.6.1-gcccore-10.3.0 |
|
util-linux
Set of Linux utilities
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.41-gcccore-14.3.0 |
|
| 2.39-gcccore-13.2.0 |
|
| 2.39-gcccore-12.3.0 |
|
| 2.38.1-gcccore-12.2.0 |
|
| 2.38-gcccore-11.3.0 |
|
| 2.37-gcccore-11.2.0 |
|
| 2.37 |
|
| 2.36-gcccore-10.3.0 |
|
| 2.36-gcccore-10.2.0 |
|
| 2.35-gcccore-9.3.0 |
|
| 2.34-gcccore-8.3.0 |
|
valgrind
Valgrind: Debugging and profiling tools
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.18.1-iimpi-2021b |
|
| 3.18.1-gompi-2021b |
|
vampire
The Vampire Theorem Prover.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 6.0-foss-2021b |
|
vasp
The Vienna Ab initio Simulation Package (VASP) is a computer program for atomic scale materials modelling, e.g. electronic structure calculations and quantum-mechanical molecular dynamics, from first principles.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 6.4.3-intel-2023b-vtst |
|
| 6.4.3-intel-2023b |
|
| 6.4.2-intel-2021b-vtst |
|
| 6.4.2-intel-2021b |
|
| 6.3.2-intel-2023b-vaspsol-vtst |
|
| 6.3.2-intel-2021b-vaspsol |
|
| 6.3.2-intel-2021b |
|
| 6.3.0-nvhpc-22.3 |
|
| 6.3.0-intel-2021a |
|
| 6.1.1-intel-2021a |
|
| 5.4.4-intel-2021b-vtst |
|
| 5.4.4-intel-2021b-vaspsol |
|
vaspgibbs
VaspGibbs: A simple way to obtain Gibbs free energy from Vasp calculations
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.0.1-intel-2021b |
|
vcftools
The aim of VCFtools is to provide easily accessible methods for working with complex genetic variation data in the form of VCF files.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.1.16-gcc-11.2.0 |
|
vermouth-martinize
Martinize2 and vermouth: The ultimate resolution transformation tools Martinize2 is aimed at producing coarse-grained structures and topologies from an atomistic structure. Martinize is primarily developed for the Martini coarse-grained force field and the Gromacs simulation engine. Vermouth (for VERsatile, MOdular, and Universal Tranformation Helper) is the python library that powers Martinize2. It allows to describe and apply transformation on molecular structures and topologies using graph algorithms.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.13.0-foss-2023a-python-3.11.3 |
|
viennarna
The Vienna RNA Package consists of a C code library and several stand-alone programs for the prediction and comparison of RNA secondary structures.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.6.4-foss-2021b-python-3.9.6 |
|
| 2.5.0-foss-2021b-python-3.9.6 |
|
vina-carb
Modified AutoDock Vina 1.1.2 which now include the CHI energy functions and called Vina-Carb 1.0.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.0-foss-2021a |
|
vina-gpu+
Vina-GPU+ further accelerates Vina-GPU and facilitates single receptor-multi-ligand docking.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.1-gcc-11.2.0-53ef662 |
|
virtualenv
A tool for creating isolated virtual python environments.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 20.32.0-gcccore-14.3.0 |
|
| 20.24.6-gcccore-13.3.0 |
|
| 20.24.6-gcccore-13.2.0 |
|
| 20.23.1-gcccore-12.3.0 |
|
virtualgl
VirtualGL is an open source toolkit that gives any Linux or Unix remote display software the ability to run OpenGL applications with full hardware acceleration.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.0-gcccore-10.3.0 |
|
| 3.0-gcc-11.2.0 |
|
| 2.6.5-gcccore-10.3.0 |
|
visit
VisIt is an Open Source, interactive, scalable, visualization, animation and analysis tool. From Unix, Windows or Mac workstations, users can interactively visualize and analyze data ranging in scale from small (105 core) leadership-class computing facility simulation campaigns. Users can quickly generate visualizations, animate them through time, manipulate them with a variety of operators and mathematical expressions, and save the resulting images and animations for presentations. VisIt contains a rich set of visualization features to enable users to view a wide variety of data including scalar and vector fields defined on two- and three-dimensional (2D and 3D) structured, adaptive and unstructured meshes. Owing to its customizeable plugin design, VisIt is capabable of visualizing data from over 120 different scientific data formats.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.4.1-foss-2023a |
|
| 3.2.2-foss-2019b |
|
vmd
VMD is a molecular visualization program for displaying, animating, and analyzing large biomolecular systems using 3-D graphics and built-in scripting.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.9.4a57-foss-2022a |
|
| 1.9.4a57-binary |
|
| 1.9.3-intel-2020b-python-2.7.18 |
|
vscode
Visual Studio Code is a lightweight but powerful source code editor which runs on your desktop and is available for Windows, macOS and Linux. It comes with built-in support for JavaScript, TypeScript and Node.js and has a rich ecosystem of extensions for other languages and runtimes (such as C++, C#, Java, Python, PHP, Go, .NET). Begin your journey with VS Code with these introductory videos.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 20240129-insiders |
|
| 1.92 |
|
| 1.86.1 |
|
vtk
The Visualization Toolkit (VTK) is an open-source, freely available software system for 3D computer graphics, image processing and visualization. VTK consists of a C++ class library and several interpreted interface layers including Tcl/Tk, Java, and Python. VTK supports a wide variety of visualization algorithms including: scalar, vector, tensor, texture, and volumetric methods; and advanced modeling techniques such as: implicit modeling, polygon reduction, mesh smoothing, cutting, contouring, and Delaunay triangulation.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 9.2.6-foss-2023a |
|
| 9.1.0-foss-2021b |
|
| 9.0.1-foss-2021a |
|
vtune
Intel VTune Amplifier XE is the premier performance profiler for C, C++, C#, Fortran, Assembly and Java.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2022.0.0 |
|
wangle
Wangle is a library that makes it easy to build protocols, application clients, and application servers.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2023.08.07.00-gcc-11.3.0 |
|
| 2021.12.13.00-gcc-11.3.0 |
|
| 2021.11.29.00-gcc-11.3.0 |
|
wannier90
A tool for obtaining maximally-localised Wannier functions
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.1.0-intel-2023b |
|
| 3.1.0-intel-2021b |
|
| 3.1.0-intel-2021a |
|
| 3.1.0-intel-2020b |
|
| 2.1.0-iomkl-2020b |
|
| 2.1.0-intel-2021b |
|
| 2.1.0-intel-2021a |
|
| 2.1.0-intel-2020b |
|
wayland
Wayland is a project to define a protocol for a compositor to talk to its clients as well as a library implementation of the protocol. The compositor can be a standalone display server running on Linux kernel modesetting and evdev input devices, an X application, or a wayland client itself. The clients can be traditional applications, X servers (rootless or fullscreen) or other display servers.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.22.0-gcccore-12.3.0 |
|
| 1.21.0-gcccore-11.2.0 |
|
waylandpp
Wayland is an object oriented display protocol, which features request and events. Requests can be seen as method calls on certain objects, whereas events can be seen as signals of an object. This makes the Wayland protocol a perfect candidate for a C++ binding. The goal of this library is to create such a C++ binding for Wayland using the most modern C++ technology currently available, providing an easy to use C++ API to Wayland.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.0.0-gcccore-11.2.0 |
|
webkitgtk+
WebKitGTK+ is a full-featured port of the WebKit rendering engine, suitable for projects requiring any kind of web integration, from hybrid HTML/CSS applications to full-fledged web browsers. It offers WebKit's full functionality and is useful in a wide range of systems from desktop computers to embedded systems like phones, tablets, and televisions.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.37.1-gcc-11.2.0 |
|
| 2.27.4-gcc-10.3.0 |
|
wget
GNU Wget is a free software package for retrieving files using HTTP, HTTPS and FTP, the most widely-used Internet protocols. It is a non-interactive commandline tool, so it may easily be called from scripts, cron jobs, terminals without X-Windows support, etc.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.21.2-gcccore-11.2.0 |
|
wise2
Wise2
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.4.1-gcccore-11.2.0 |
|
wpebackend-fdo
WPE WebKit allows embedders to create simple and performant systems based on Web platform technologies. It is a WebKit port designed with flexibility and hardware acceleration in mind, leveraging common 3D graphics APIs for best performance.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.13.1-gcccore-11.2.0 |
|
wrf
The Weather Research and Forecasting (WRF) Model is a next-generation mesoscale numerical weather prediction system designed to serve both operational forecasting and atmospheric research needs.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.3-foss-2021a-dmpar |
|
| 4.1.3-foss-2019b-dmpar |
|
wxpython
Wraps the wxWidgets C++ toolkit and provides access to the user interface portions of the wxWidgets API, enabling Python applications to have a native GUI on Windows, Macs or Unix systems, with a native look and feel and requiring very little (if any) platform specific code.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.2.0-foss-2021b |
|
| 4.1.1-foss-2021a |
|
wxwidgets
wxWidgets is a C++ library that lets developers create applications for Windows, Mac OS X, Linux and other platforms with a single code base. It has popular language bindings for Python, Perl, Ruby and many other languages, and unlike other cross-platform toolkits, wxWidgets gives applications a truly native look and feel because it uses the platform's native API rather than emulating the GUI.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.2.2.1-gcc-12.3.0 |
|
| 3.2.0-gcc-11.2.0 |
|
| 3.1.5-gcc-11.2.0 |
|
x11
The X Window System (X11) is a windowing system for bitmap displays
| Versions | Environment loading command (via Lmod) |
|---|---|
| 20231019-gcccore-13.2.0 |
|
| 20230603-gcccore-12.3.0 |
|
| 20221110-gcccore-12.2.0 |
|
| 20220504-gcccore-11.3.0 |
|
| 20210802-gcccore-11.2.0-old_libpng |
|
| 20210802-gcccore-11.2.0 |
|
| 20210802 |
|
| 20210518-gcccore-10.3.0 |
|
| 20201008-gcccore-10.2.0 |
|
| 20200222-gcccore-9.3.0 |
|
| 20190717-gcccore-8.3.0 |
|
x264
x264 is a free software library and application for encoding video streams into the H.264/MPEG-4 AVC compression format, and is released under the terms of the GNU GPL.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 20230226-gcccore-12.3.0 |
|
| 20220620-gcccore-11.3.0 |
|
| 20210613-gcccore-11.2.0 |
|
| 20210414-gcccore-10.3.0 |
|
| 20201026-gcccore-10.2.0 |
|
x265
x265 is a free software library and application for encoding video streams into the H.265 AVC compression format, and is released under the terms of the GNU GPL.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.5-gcccore-12.3.0 |
|
| 3.5-gcccore-11.3.0 |
|
| 3.5-gcccore-11.2.0 |
|
| 3.5-gcccore-10.3.0 |
|
| 3.3-gcccore-10.2.0 |
|
xcb-proto
The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, latency hiding, direct access to the protocol, improved threading support, and extensibility.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.17.0 |
|
| 1.13 |
|
xcfun
Arbitrary order exchange-correlation functional library
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.1.1-gcccore-11.2.0 |
|
xerces-c++
Xerces-C++ is a validating XML parser written in a portable subset of C++. Xerces-C++ makes it easy to give your application the ability to read and write XML data. A shared library is provided for parsing, generating, manipulating, and validating XML documents using the DOM, SAX, and SAX2 APIs.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.2.4-gcccore-12.3.0 |
|
| 3.2.4-gcccore-11.3.0 |
|
| 3.2.3-gcccore-11.2.0 |
|
xextproto
XExtProto protocol headers.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 7.3.0-foss-2023a |
|
| 7.3.0-foss-2021b |
|
xharpy
XHARPy (X-ray diffraction data Hirshfeld Atom Refinement in Python) is a pure Python library that enables refinement with custom atomic form factors from various sources.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 336fa9c-intel-2021b |
|
| 336fa9c-foss-2021a |
|
| 7a37147-intel-2021b |
|
| 7a37147-foss-2021a |
|
xml-libxml
Perl binding for libxml2
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.0207-gcccore-10.3.0 |
|
| 2.0206-gcccore-10.2.0 |
|
xmlf90
A fast XML parser and generator in Fortran
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.6.3-gcc-12.3.0 |
|
xorg-macros
X.org macros utilities.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.20.1-gcccore-13.3.0 |
|
| 1.20.0-gcccore-13.2.0 |
|
| 1.20.0-gcccore-12.3.0 |
|
| 1.19.3-gcccore-12.2.0 |
|
| 1.19.3-gcccore-11.3.0 |
|
| 1.19.3-gcccore-11.2.0 |
|
| 1.19.3-gcccore-10.3.0 |
|
| 1.19.3 |
|
| 1.19.2-gcccore-10.2.0 |
|
| 1.19.2-gcccore-9.3.0 |
|
| 1.19.2-gcccore-8.3.0 |
|
| 1.19.2-gcccore-7.3.0 |
|
xpdf
GNU nano text editor.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.04-gcccore-11.2.0 |
|
xprop
The xprop utility is for displaying window and font properties in an X server. One window or font is selected using the command line arguments or possibly in the case of a window, by clicking on the desired window. A list of properties is then given, possibly with formatting information.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.2.5-gcccore-11.3.0 |
|
| 1.2.5-gcccore-11.2.0 |
|
| 1.2.5-gcccore-10.2.0 |
|
| 1.2.4-gcccore-9.3.0 |
|
| 1.2.4-gcccore-8.3.0 |
|
xproto
X protocol and ancillary headers
| Versions | Environment loading command (via Lmod) |
|---|---|
| 7.0.31-gcccore-12.3.0 |
|
| 7.0.31-gcccore-11.2.0 |
|
xtb
xtb - An extended tight-binding semi-empirical program package.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 6.7.1-gfbf-2023a-ec4f388 |
|
| 6.6.1-intel-2023a |
|
| 6.6.1-gfbf-2023a |
|
| 6.5.0-intel-2021b |
|
| 6.4.1-intel-2021a |
|
xtbiff
xtb-IFF program developed by the Grimme group in Bonn
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.1 |
|
xtrans
xtrans includes a number of routines to make X implementations transport-independent; at time of writing, it includes support for UNIX sockets, IPv4, IPv6, and DECnet.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.3.5-foss-2023a |
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| 1.3.5-foss-2021b |
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xvfb
Xvfb is an X server that can run on machines with no display hardware and no physical input devices. It emulates a dumb framebuffer using virtual memory.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 21.1.8-gcccore-12.3.0 |
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| 21.1.3-gcccore-11.3.0 |
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| 1.20.13-gcccore-11.2.0 |
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| 1.20.11-gcccore-10.3.0 |
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| 1.20.9-gcccore-10.2.0 |
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xxd
xxd is part of the VIM package and this will only install xxd, not vim! xxd converts to/from hexdumps of binary files.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 9.0.2112-gcccore-12.3.0 |
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| 8.2.4220-gcccore-11.2.0 |
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xz
xz: XZ utilities
| Versions | Environment loading command (via Lmod) |
|---|---|
| 5.8.1-gcccore-14.3.0 |
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| 5.4.5-gcccore-13.3.0 |
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| 5.4.5-gcccore-13.2.0 |
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| 5.4.4-gcccore-13.2.0 |
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| 5.4.2-gcccore-12.3.0 |
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| 5.2.7-gcccore-12.2.0 |
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| 5.2.7 |
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| 5.2.5-gcccore-11.3.0 |
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| 5.2.5-gcccore-11.2.0 |
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| 5.2.5-gcccore-10.3.0 |
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| 5.2.5-gcccore-10.2.0 |
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| 5.2.5-gcccore-9.3.0 |
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| 5.2.5 |
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| 5.2.4-gcccore-11.2.0 |
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| 5.2.4-gcccore-8.3.0 |
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| 5.2.4-gcccore-8.2.0 |
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| 5.2.4-gcccore-7.3.0 |
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yambo
Yambo is a FORTRAN/C code for Many-Body calculations in solid state and molecular physics. Yambo relies on the Kohn-Sham wavefunctions generated by two DFT public codes: abinit, and PWscf.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 5.3.0-foss-2021b-slepc-nohdf5 |
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| 5.3.0-foss-2021b-slepc-call-warning |
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| 5.3.0-foss-2021b-slepc |
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| 5.2.1-foss-2021b-slepc |
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| 5.2.1-foss-2021b |
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| 5.1.2-intel-2021b |
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| 5.1.1-intel-2021b-no-time-profile |
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| 5.1.1-intel-2021b |
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| 4.5.3-intel-2021b |
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yaml-cpp
yaml-cpp is a YAML parser and emitter in C++ matching the YAML 1.2 spec.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.6.3-foss-2021b |
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| 0.6.3-foss-2019b |
|
yasm
Yasm: Complete rewrite of the NASM assembler with BSD license
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.3.0-gcccore-12.3.0 |
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| 1.3.0-gcccore-11.3.0 |
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| 1.3.0-gcccore-11.2.0 |
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| 1.3.0-gcccore-10.3.0 |
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| 1.3.0-gcccore-10.2.0 |
|
z3
Z3 is a theorem prover from Microsoft Research with support for bitvectors, booleans, arrays, floating point numbers, strings, and other data types. This module includes z3-solver, the Python interface of Z3.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.13.0-gcccore-13.3.0 |
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| 4.12.2-gcccore-12.3.0 |
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| 4.10.2-gcccore-11.3.0 |
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| 4.8.12-gcccore-11.2.0 |
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| 4.8.10-gcccore-10.2.0 |
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zeromq
ZeroMQ looks like an embeddable networking library but acts like a concurrency framework. It gives you sockets that carry atomic messages across various transports like in-process, inter-process, TCP, and multicast. You can connect sockets N-to-N with patterns like fanout, pub-sub, task distribution, and request-reply. It's fast enough to be the fabric for clustered products. Its asynchronous I/O model gives you scalable multicore applications, built as asynchronous message-processing tasks. It has a score of language APIs and runs on most operating systems.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.3.5-gcccore-14.3.0 |
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| 4.3.5-gcccore-13.2.0 |
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| 4.3.4-gcccore-12.3.0 |
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| 4.3.4-gcccore-11.3.0 |
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| 4.3.4-gcccore-11.2.0 |
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| 4.3.4-gcccore-10.3.0 |
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| 4.3.3-gcccore-10.2.0 |
|
zip
Zip is a compression and file packaging/archive utility. Although highly compatible both with PKWARE's PKZIP and PKUNZIP utilities for MS-DOS and with Info-ZIP's own UnZip, our primary objectives have been portability and other-than-MSDOS functionality
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.0-gcccore-12.3.0 |
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| 3.0-gcccore-11.3.0 |
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| 3.0-gcccore-11.2.0 |
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| 3.0-gcccore-10.3.0 |
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| 3.0-gcccore-10.2.0 |
|
zlib
zlib is designed to be a free, general-purpose, legally unencumbered -- that is, not covered by any patents -- lossless data-compression library for use on virtually any computer hardware and operating system.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.3.1-gcccore-14.3.0 |
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| 1.3.1-gcccore-13.3.0 |
|
| 1.3.1-gcccore-13.2.0 |
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| 1.3.1 |
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| 1.2.13-gcccore-13.2.0 |
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| 1.2.13-gcccore-13.1.0 |
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| 1.2.13-gcccore-12.3.0 |
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| 1.2.13 |
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| 1.2.12-gcccore-12.2.0 |
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| 1.2.12-gcccore-11.3.0 |
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| 1.2.12 |
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| 1.2.11-gcccore-11.2.0 |
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| 1.2.11-gcccore-10.3.0 |
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| 1.2.11-gcccore-10.2.0 |
|
| 1.2.11-gcccore-9.3.0 |
|
| 1.2.11-gcccore-8.3.0 |
|
| 1.2.11-gcccore-8.2.0 |
|
| 1.2.11-gcccore-7.3.0 |
|
| 1.2.11 |
|
| 1.2.8 |
|
zsh
Zsh is a shell designed for interactive use, although it is also a powerful scripting language.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 5.9 |
|
zstd
Zstandard is a real-time compression algorithm, providing high compression ratios. It offers a very wide range of compression/speed trade-off, while being backed by a very fast decoder. It also offers a special mode for small data, called dictionary compression, and can create dictionaries from any sample set.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.5.7-gcccore-14.3.0 |
|
| 1.5.6-gcccore-13.3.0 |
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| 1.5.5-gcccore-13.2.0 |
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| 1.5.5-gcccore-12.3.0 |
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| 1.5.2-gcccore-12.2.0 |
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| 1.5.2-gcccore-11.3.0 |
|
| 1.5.2 |
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| 1.5.0-gcccore-11.2.0 |
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| 1.5.0 |
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| 1.4.9-gcccore-10.3.0 |
|
| 1.4.5-gcccore-10.2.0 |
|
| 1.4.4-gcccore-9.3.0 |
|
Ostatnia aktualizacja: 7 listopada 2025