Dokumentacja PLGrid

Athena

W niektórych przypadkach oprogramowanie z poniższej listy może wymagać posiadania dodatkowej licencji i może nie być ogólnodostępne dla wszystkich użytkowników PLGrid.

ACTC

ACTC converts independent triangles into triangle strips or fans.

Versions Environment loading command (via Lmod)
1.1
GCCcore/11.3.0 ACTC/1.1

AOCL-BLAS

AOCL-BLAS is AMD's optimized version of BLAS targeted for AMD EPYC and Ryzen CPUs.

Versions Environment loading command (via Lmod)
5.0
GCC/14.2.0 AOCL-BLAS/5.0

ASE

ASE is a python package providing an open source Atomic Simulation Environment in the Python scripting language. From version 3.20.1 we also include the ase-ext package, it contains optional reimplementations in C of functions in ASE. ASE uses it automatically when installed.

Versions Environment loading command (via Lmod)
3.22.0
GCC/10.3.0 OpenMPI/4.1.1 ASE/3.22.0

ATK

ATK provides the set of accessibility interfaces that are implemented by other toolkits and applications. Using the ATK interfaces, accessibility tools have full access to view and control running applications.

Versions Environment loading command (via Lmod)
2.38.0
GCCcore/13.2.0 ATK/2.38.0
2.38.0
GCCcore/11.3.0 ATK/2.38.0
2.36.0
GCCcore/11.2.0 ATK/2.36.0
2.36.0
GCCcore/10.3.0 ATK/2.36.0

Abseil

Abseil is an open-source collection of C++ library code designed to augment the C++ standard library. The Abseil library code is collected from Google's own C++ code base, has been extensively tested and used in production, and is the same code we depend on in our daily coding lives.

Versions Environment loading command (via Lmod)
20250512.1
GCCcore/14.2.0 Abseil/20250512.1
20230125.3
GCCcore/12.3.0 Abseil/20230125.3
20230125.2
GCCcore/11.3.0 Abseil/20230125.2

AlphaFold

AlphaFold2

Versions Environment loading command (via Lmod)
3.0.1
AlphaFold/3.0.1
3.0.0
AlphaFold/3.0.0
2.3.2
AlphaFold/2.3.2
2.3.1
AlphaFold/2.3.1

Amber

Amber (originally Assisted Model Building with Energy Refinement) is software for performing molecular dynamics and structure prediction.

Versions Environment loading command (via Lmod)
24.3-AmberTools-24.6
GCC/12.3.0 OpenMPI/4.1.5 Amber/24.3-AmberTools-24.6
22.5-AmberTools-23.6-CUDA-12.1.1.0
GCC/12.3.0 OpenMPI/4.1.5 Amber/22.5-AmberTools-23.6-CUDA-12.1.1.0
22.0-AmberTools-22.3-CUDA-11.6.0
GCC/11.2.0 OpenMPI/4.1.2 Amber/22.0-AmberTools-22.3-CUDA-11.6.0

Armadillo

Armadillo is an open-source C++ linear algebra library (matrix maths) aiming towards a good balance between speed and ease of use. Integer, floating point and complex numbers are supported, as well as a subset of trigonometric and statistics functions.

Versions Environment loading command (via Lmod)
12.6.2
GCC/12.3.0 OpenMPI/4.1.5 Armadillo/12.6.2

Arrow

Apache Arrow (incl. PyArrow Python bindings), a cross-language development platform for in-memory data.

Versions Environment loading command (via Lmod)
21.0.0
GCC/14.2.0 Arrow/21.0.0
17.0.0
GCC/14.2.0 Arrow/17.0.0

Autoconf

Autoconf is an extensible package of M4 macros that produce shell scripts to automatically configure software source code packages. These scripts can adapt the packages to many kinds of UNIX-like systems without manual user intervention. Autoconf creates a configuration script for a package from a template file that lists the operating system features that the package can use, in the form of M4 macro calls.

Versions Environment loading command (via Lmod)
2.72
GCCcore/14.3.0 Autoconf/2.72
2.72
GCCcore/14.2.0 Autoconf/2.72
2.72
GCCcore/13.3.0 Autoconf/2.72
2.71
GCCcore/13.2.0 Autoconf/2.71
2.71
GCCcore/12.3.0 Autoconf/2.71
2.71
GCCcore/12.2.0 Autoconf/2.71
2.71
GCCcore/11.3.0 Autoconf/2.71
2.71
GCCcore/11.2.0 Autoconf/2.71
2.71
GCCcore/10.3.0 Autoconf/2.71
2.71
Autoconf/2.71
2.69
Autoconf/2.69

Automake

Automake: GNU Standards-compliant Makefile generator

Versions Environment loading command (via Lmod)
1.18
GCCcore/14.3.0 Automake/1.18
1.17
GCCcore/14.2.0 Automake/1.17
1.16.5
GCCcore/13.3.0 Automake/1.16.5
1.16.5
GCCcore/13.2.0 Automake/1.16.5
1.16.5
GCCcore/12.3.0 Automake/1.16.5
1.16.5
GCCcore/12.2.0 Automake/1.16.5
1.16.5
GCCcore/11.3.0 Automake/1.16.5
1.16.5
Automake/1.16.5
1.16.4
GCCcore/11.2.0 Automake/1.16.4
1.16.3
GCCcore/10.3.0 Automake/1.16.3
1.15.1
Automake/1.15.1

Autotools

This bundle collect the standard GNU build tools: Autoconf, Automake and libtool

Versions Environment loading command (via Lmod)
20250527
GCCcore/14.3.0 Autotools/20250527
20240712
GCCcore/14.2.0 Autotools/20240712
20231222
GCCcore/13.3.0 Autotools/20231222
20220317
GCCcore/13.2.0 Autotools/20220317
20220317
GCCcore/12.3.0 Autotools/20220317
20220317
GCCcore/12.2.0 Autotools/20220317
20220317
GCCcore/11.3.0 Autotools/20220317
20220317
Autotools/20220317
20210726
GCCcore/11.2.0 Autotools/20210726
20210128
GCCcore/10.3.0 Autotools/20210128

BEEF

BEEF is a library-based implementation of the Bayesian Error Estimation Functional, suitable for linking against by Fortran- or C-based DFT codes. A description of BEEF can be found at http://dx.doi.org/10.1103/PhysRevB.85.235149.

Versions Environment loading command (via Lmod)
0.1.1
intel-compilers/2022.1.0 BEEF/0.1.1

BLIS

BLIS is a portable software framework for instantiating high-performance BLAS-like dense linear algebra libraries.

Versions Environment loading command (via Lmod)
1.1
GCC/14.2.0 BLIS/1.1
0.9.0
GCC/13.2.0 BLIS/0.9.0
0.9.0
GCC/12.3.0 BLIS/0.9.0
0.9.0
GCC/12.2.0 BLIS/0.9.0
0.9.0
GCC/11.3.0 BLIS/0.9.0
0.8.1
GCC/11.2.0 BLIS/0.8.1
0.8.1
GCC/10.3.0 BLIS/0.8.1

Bazel

Bazel is a build tool that builds code quickly and reliably. It is used to build the majority of Google's software.

Versions Environment loading command (via Lmod)
6.3.1
GCCcore/12.3.0 Bazel/6.3.1
5.1.1
GCCcore/11.3.0 Bazel/5.1.1
5.1.1
GCCcore/11.2.0 Bazel/5.1.1
4.2.2
GCCcore/11.2.0 Bazel/4.2.2
3.7.2
GCCcore/11.2.0 Bazel/3.7.2
3.7.2
GCCcore/10.3.0 Bazel/3.7.2

BeautifulSoup

Beautiful Soup is a Python library designed for quick turnaround projects like screen-scraping.

Versions Environment loading command (via Lmod)
4.14.2
GCCcore/14.3.0 BeautifulSoup/4.14.2
4.12.2
GCCcore/13.2.0 BeautifulSoup/4.12.2
4.12.2
GCCcore/12.3.0 BeautifulSoup/4.12.2
4.10.0
GCCcore/11.3.0 BeautifulSoup/4.10.0

Bison

Bison is a general-purpose parser generator that converts an annotated context-free grammar into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.

Versions Environment loading command (via Lmod)
3.8.2
GCCcore/14.3.0 Bison/3.8.2
3.8.2
GCCcore/14.2.0 Bison/3.8.2
3.8.2
GCCcore/13.3.0 Bison/3.8.2
3.8.2
GCCcore/13.2.0 Bison/3.8.2
3.8.2
GCCcore/12.3.0 Bison/3.8.2
3.8.2
GCCcore/12.2.0 Bison/3.8.2
3.8.2
GCCcore/11.3.0 Bison/3.8.2
3.8.2
Bison/3.8.2
3.7.6
GCCcore/11.2.0 Bison/3.7.6
3.7.6
GCCcore/10.3.0 Bison/3.7.6

Blender

Blender is the free and open source 3D creation suite. It supports the entirety of the 3D pipeline-modeling, rigging, animation, simulation, rendering, compositing and motion tracking, even video editing and game creation.

Versions Environment loading command (via Lmod)
3.5.0-linux-x86_64-CUDA-11.7.0
Blender/3.5.0-linux-x86_64-CUDA-11.7.0
3.3.2-linux-x86_64-CUDA-11.7.0
Blender/3.3.2-linux-x86_64-CUDA-11.7.0

Blitz++

Blitz++ is a (LGPLv3+) licensed meta-template library for array manipulation in C++ with a speed comparable to Fortran implementations, while preserving an object-oriented interface

Versions Environment loading command (via Lmod)
1.0.2
GCCcore/11.3.0 Blitz++/1.0.2

Boost

Boost provides free peer-reviewed portable C++ source libraries.

Versions Environment loading command (via Lmod)
1.88.0
GCC/14.2.0 Boost/1.88.0
1.85.0
GCC/12.3.0 Boost/1.85.0
1.83.0
GCC/13.2.0 Boost/1.83.0
1.82.0
GCC/12.3.0 Boost/1.82.0
1.79.0
GCC/11.3.0 Boost/1.79.0
1.77.0
GCC/11.2.0 Boost/1.77.0

Boost.MPI

Boost provides free peer-reviewed portable C++ source libraries.

Versions Environment loading command (via Lmod)
1.79.0-mpi-thread-multiple
GCC/11.3.0 OpenMPI/4.1.4-mpi-thread-multiple Boost.MPI/1.79.0-mpi-thread-multiple

Brotli

Brotli is a generic-purpose lossless compression algorithm that compresses data using a combination of a modern variant of the LZ77 algorithm, Huffman coding and 2nd order context modeling, with a compression ratio comparable to the best currently available general-purpose compression methods. It is similar in speed with deflate but offers more dense compression. The specification of the Brotli Compressed Data Format is defined in RFC 7932.

Versions Environment loading command (via Lmod)
1.1.0
GCCcore/14.2.0 Brotli/1.1.0
1.1.0
GCCcore/13.3.0 Brotli/1.1.0
1.1.0
GCCcore/13.2.0 Brotli/1.1.0
1.0.9
GCCcore/12.3.0 Brotli/1.0.9
1.0.9
GCCcore/11.3.0 Brotli/1.0.9
1.0.9
GCCcore/11.2.0 Brotli/1.0.9
1.0.9
GCCcore/10.3.0 Brotli/1.0.9
1.0.9
Brotli/1.0.9

Brunsli

Brunsli is a lossless JPEG repacking library.

Versions Environment loading command (via Lmod)
0.1
GCCcore/12.3.0 Brunsli/0.1

CFITSIO

CFITSIO is a library of C and Fortran subroutines for reading and writing data files in FITS (Flexible Image Transport System) data format.

Versions Environment loading command (via Lmod)
4.3.0
GCCcore/12.3.0 CFITSIO/4.3.0

CGAL

The goal of the CGAL Open Source Project is to provide easy access to efficient and reliable geometric algorithms in the form of a C++ library.

Versions Environment loading command (via Lmod)
5.6
GCCcore/12.3.0 CGAL/5.6
4.14.3
GCC/11.3.0 OpenMPI/4.1.4 CGAL/4.14.3

CMake

CMake, the cross-platform, open-source build system. CMake is a family of tools designed to build, test and package software.

Versions Environment loading command (via Lmod)
4.0.3
GCCcore/14.3.0 CMake/4.0.3
3.31.3
GCCcore/14.2.0 CMake/3.31.3
3.29.3
GCCcore/13.3.0 CMake/3.29.3
3.27.6
GCCcore/13.2.0 CMake/3.27.6
3.26.3
GCCcore/12.3.0 CMake/3.26.3
3.24.3
GCCcore/12.2.0 CMake/3.24.3
3.24.3
GCCcore/11.3.0 CMake/3.24.3
3.23.1
GCCcore/11.3.0 CMake/3.23.1
3.23.1
CMake/3.23.1
3.22.1
GCCcore/11.2.0 CMake/3.22.1
3.21.1
GCCcore/11.2.0 CMake/3.21.1
3.21.1
CMake/3.21.1
3.20.1
GCCcore/10.3.0 CMake/3.20.1

COSTA

COSTA is a communication-optimal, highly-optimised algorithm for data redistribution accross multiple processors, using MPI and OpenMP and offering the possibility to transpose and scale some or all data.

Versions Environment loading command (via Lmod)
2.2.2
GCC/11.3.0 OpenMPI/4.1.4 COSTA/2.2.2

CP2K

CP2K is a freely available (GPL) program, written in Fortran 95, to perform atomistic and molecular simulations of solid state, liquid, molecular and biological systems. It provides a general framework for different methods such as e.g. density functional theory (DFT) using a mixed Gaussian and plane waves approach (GPW), and classical pair and many-body potentials.

Versions Environment loading command (via Lmod)
2022.2
GCC/11.3.0 OpenMPI/4.1.4 CP2K/2022.2
9.1-CUDA-11.6.0-noplumed
GCC/11.2.0 OpenMPI/4.1.2 CP2K/9.1-CUDA-11.6.0-noplumed

CUDA

CUDA (formerly Compute Unified Device Architecture) is a parallel computing platform and programming model created by NVIDIA and implemented by the graphics processing units (GPUs) that they produce. CUDA gives developers access to the virtual instruction set and memory of the parallel computational elements in CUDA GPUs.

Versions Environment loading command (via Lmod)
12.8.0
CUDA/12.8.0
12.4.0
CUDA/12.4.0
12.3.0
CUDA/12.3.0
12.2.0
CUDA/12.2.0
12.1.1
CUDA/12.1.1
12.0.0
CUDA/12.0.0
11.8.0
CUDA/11.8.0
11.7.0
CUDA/11.7.0
11.6.0
CUDA/11.6.0
11.4.1
CUDA/11.4.1
11.3.1
CUDA/11.3.1
10.0.130
CUDA/10.0.130

CUTLASS

CUTLASS is a collection of CUDA C++ template abstractions for implementing high-performance matrix-matrix multiplication (GEMM) and related computations at all levels and scales within CUDA. It incorporates strategies for hierarchical decomposition and data movement similar to those used to implement cuBLAS and cuDNN. CUTLASS decomposes these "moving parts" into reusable, modular software components abstracted by C++ template classes. Primitives for different levels of a conceptual parallelization hierarchy can be specialized and tuned via custom tiling sizes, data types, and other algorithmic policy. The resulting flexibility simplifies their use as building blocks within custom kernels and applications.

Versions Environment loading command (via Lmod)
3.6.0-CUDA-12.4.0
GCC/12.3.0 OpenMPI/4.1.5 CUTLASS/3.6.0-CUDA-12.4.0
3.4.0-CUDA-12.1.1
GCC/12.3.0 OpenMPI/4.1.5 CUTLASS/3.4.0-CUDA-12.1.1

Catch2

A modern, C++-native, header-only, test framework for unit-tests, TDD and BDD - using C++11, C++14, C++17 and later

Versions Environment loading command (via Lmod)
2.13.10
GCCcore/14.2.0 Catch2/2.13.10
2.13.9
Catch2/2.13.9

Clang

C, C++, Objective-C compiler, based on LLVM. Does not include C++ standard library -- use libstdc++ from GCC.

Versions Environment loading command (via Lmod)
17.0.6-CUDA-12.4.0
GCCcore/13.2.0 Clang/17.0.6-CUDA-12.4.0
16.0.6
GCCcore/12.3.0 Clang/16.0.6
13.0.1-CUDA-11.4.1
GCCcore/11.2.0 Clang/13.0.1-CUDA-11.4.1
13.0.1
GCCcore/11.3.0 Clang/13.0.1

CppUnit

CppUnit is the C++ port of the famous JUnit framework for unit testing.

Versions Environment loading command (via Lmod)
1.15.1
GCCcore/11.3.0 CppUnit/1.15.1

CuPy

CuPy is an open-source array library accelerated with NVIDIA CUDA.

Versions Environment loading command (via Lmod)
12.1.0-CUDA-12.0.0
GCC/12.2.0 OpenMPI/4.1.4 CuPy/12.1.0-CUDA-12.0.0

Cython

Cython is an optimising static compiler for both the Python programming language and the extended Cython programming language (based on Pyrex).

Versions Environment loading command (via Lmod)
3.1.2
GCCcore/14.3.0 Cython/3.1.2
3.1.1
GCCcore/14.2.0 Cython/3.1.1
3.0.8
GCCcore/12.3.0 Cython/3.0.8

DB

Berkeley DB enables the development of custom data management solutions, without the overhead traditionally associated with such custom projects.

Versions Environment loading command (via Lmod)
18.1.40
GCCcore/12.2.0 DB/18.1.40
18.1.40
GCCcore/11.3.0 DB/18.1.40
18.1.40
GCCcore/11.2.0 DB/18.1.40
18.1.40
GCCcore/10.3.0 DB/18.1.40
18.1.40
DB/18.1.40

DBus

D-Bus is a message bus system, a simple way for applications to talk to one another. In addition to interprocess communication, D-Bus helps coordinate process lifecycle; it makes it simple and reliable to code a "single instance" application or daemon, and to launch applications and daemons on demand when their services are needed.

Versions Environment loading command (via Lmod)
1.15.8
GCCcore/13.2.0 DBus/1.15.8
1.15.4
GCCcore/12.3.0 DBus/1.15.4
1.14.0
GCCcore/11.3.0 DBus/1.14.0
1.13.18
GCCcore/11.2.0 DBus/1.13.18
1.13.18
GCCcore/10.3.0 DBus/1.13.18

DFTB+

DFTB+ is a fast and efficient versatile quantum mechanical simulation package. It is based on the Density Functional Tight Binding (DFTB) method, containing almost all of the useful extensions which have been developed for the DFTB framework so far. Using DFTB+ you can carry out quantum mechanical simulations like with ab-initio density functional theory based packages, but in an approximate way gaining typically around two order of magnitude in speed.

Versions Environment loading command (via Lmod)
24.1-CUDA-11.7.0
GCC/11.3.0 OpenMPI/4.1.4 DFTB+/24.1-CUDA-11.7.0

Doxygen

Doxygen is a documentation system for C++, C, Java, Objective-C, Python, IDL (Corba and Microsoft flavors), Fortran, VHDL, PHP, C#, and to some extent D.

Versions Environment loading command (via Lmod)
1.14.0
GCCcore/14.2.0 Doxygen/1.14.0
1.11.0
GCCcore/13.3.0 Doxygen/1.11.0
1.9.8
GCCcore/13.2.0 Doxygen/1.9.8
1.9.7
GCCcore/12.3.0 Doxygen/1.9.7
1.9.4
GCCcore/11.3.0 Doxygen/1.9.4
1.9.1
GCCcore/11.2.0 Doxygen/1.9.1

ELPA

Eigenvalue SoLvers for Petaflop-Applications.

Versions Environment loading command (via Lmod)
2022.05.001-CUDA-11.7.0-silent
GCC/11.3.0 OpenMPI/4.1.4 ELPA/2022.05.001-CUDA-11.7.0-silent
2022.05.001-CUDA-11.7.0
GCC/11.3.0 OpenMPI/4.1.4 ELPA/2022.05.001-CUDA-11.7.0
2021.11.001-CUDA-11.6.0
GCC/11.2.0 OpenMPI/4.1.2 ELPA/2021.11.001-CUDA-11.6.0

ELSI

ELSI provides and enhances scalable, open-source software library solutions for electronic structure calculations in materials science, condensed matter physics, chemistry, and many other fields. ELSI focuses on methods that solve or circumvent eigenvalue problems in electronic structure theory. The ELSI infrastructure should also be useful for other challenging eigenvalue problems.

Versions Environment loading command (via Lmod)
2.7.1-CUDA-11.7.0-silent
GCC/11.3.0 OpenMPI/4.1.4 ELSI/2.7.1-CUDA-11.7.0-silent
2.7.1-CUDA-11.7.0
GCC/11.3.0 OpenMPI/4.1.4 ELSI/2.7.1-CUDA-11.7.0
2.7.1-CUDA-11.6.0
GCC/11.2.0 OpenMPI/4.1.2 ELSI/2.7.1-CUDA-11.6.0

ESMFold

Evolutionary Scale Modeling

Versions Environment loading command (via Lmod)
2.0.1
ESMFold/2.0.1

EXP-T

The EXP-T program package is designed for high-precision modeling of molecular electronic structure using the relativistic Fock space multireference coupled cluster method (FS-RCC).

Versions Environment loading command (via Lmod)
e3753ab-CUDA-12.4.0
GCC/13.2.0 EXP-T/e3753ab-CUDA-12.4.0

Eigen

Eigen is a C++ template library for linear algebra: matrices, vectors, numerical solvers, and related algorithms.

Versions Environment loading command (via Lmod)
3.4.0
GCCcore/14.2.0 Eigen/3.4.0
3.4.0
GCCcore/12.3.0 Eigen/3.4.0
3.4.0
GCCcore/12.2.0 Eigen/3.4.0
3.4.0
GCCcore/11.3.0 Eigen/3.4.0
3.4.0
GCCcore/11.2.0 Eigen/3.4.0
3.3.9
GCCcore/11.2.0 Eigen/3.3.9
3.3.9
GCCcore/10.3.0 Eigen/3.3.9

Emacs

GNU Emacs is an extensible, customizable text editor--and more. At its core is an interpreter for Emacs Lisp, a dialect of the Lisp programming language with extensions to support text editing.

Versions Environment loading command (via Lmod)
29.1
Emacs/29.1

ErlangOTP

Erlang is a general-purpose concurrent, garbage-collected programming language and runtime system.

Versions Environment loading command (via Lmod)
27.3.3
ErlangOTP/27.3.3
27.1.2
ErlangOTP/27.1.2
26.2.5.11
ErlangOTP/26.2.5.11
26.2.5.4
ErlangOTP/26.2.5.4

EternaFold

EternaFold performs multitask learning to improve RNA structure prediction. Its training tasks include 1) predicting single structures, 2) maximizing the likelihood of structure probing data, 3) predicting experimentally-measured affinities of RNA molecules to proteins and small molecules.

Versions Environment loading command (via Lmod)
1.3.1
GCC/13.2.0 OpenMPI/4.1.6 EternaFold/1.3.1

FFTW

FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data.

Versions Environment loading command (via Lmod)
3.3.10
NVHPC/24.5-CUDA-12.4.0 FFTW/3.3.10
3.3.10
NVHPC/22.11-CUDA-11.7.0 OpenMPI/4.1.4-CUDA-11.7.0 FFTW/3.3.10
3.3.10
NVHPC/22.11-CUDA-11.7.0 OpenMPI/4.1.4 FFTW/3.3.10
3.3.10
intel-compilers/2022.1.0 impi/2021.6.0 FFTW/3.3.10
3.3.10
GCC/14.2.0 FFTW/3.3.10
3.3.10
GCC/13.2.0 FFTW/3.3.10
3.3.10
GCC/12.3.0 FFTW/3.3.10
3.3.10
GCC/12.2.0 FFTW/3.3.10
3.3.10
GCC/11.3.0 FFTW/3.3.10
3.3.10
GCC/11.2.0 OpenMPI/4.1.2 FFTW/3.3.10
3.3.9
GCC/10.3.0 OpenMPI/4.1.1 FFTW/3.3.9

FFTW.MPI

FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data.

Versions Environment loading command (via Lmod)
3.3.10
GCC/14.2.0 OpenMPI/5.0.7 FFTW.MPI/3.3.10
3.3.10
GCC/13.2.0 OpenMPI/4.1.6 FFTW.MPI/3.3.10
3.3.10
GCC/12.3.0 OpenMPI/4.1.5 FFTW.MPI/3.3.10
3.3.10
GCC/12.2.0 OpenMPI/4.1.4 FFTW.MPI/3.3.10
3.3.10
GCC/11.3.0 OpenMPI/4.1.4 FFTW.MPI/3.3.10

FFmpeg

A complete, cross-platform solution to record, convert and stream audio and video.

Versions Environment loading command (via Lmod)
6.0
GCCcore/13.2.0 FFmpeg/6.0
6.0
GCCcore/12.3.0 FFmpeg/6.0
4.4.2
GCCcore/11.3.0 FFmpeg/4.4.2
4.3.2
GCCcore/10.3.0 FFmpeg/4.3.2

FLAC

FLAC stands for Free Lossless Audio Codec, an audio format similar to MP3, but lossless, meaning that audio is compressed in FLAC without any loss in quality.

Versions Environment loading command (via Lmod)
1.4.2
GCCcore/12.3.0 FLAC/1.4.2
1.3.4
GCCcore/11.3.0 FLAC/1.3.4

FLAMEGPU2

FLAME GPU is a GPU accelerated agent-based simulation library for domain independent complex systems simulations

Versions Environment loading command (via Lmod)
2c565e2
GCCcore/11.2.0 FLAMEGPU2/2c565e2

FLTK

FLTK is a cross-platform C++ GUI toolkit for UNIX/Linux (X11), Microsoft Windows, and MacOS X. FLTK provides modern GUI functionality without the bloat and supports 3D graphics via OpenGL and its built-in GLUT emulation.

Versions Environment loading command (via Lmod)
1.3.9
GCCcore/13.2.0 FLTK/1.3.9
1.3.8
GCCcore/11.3.0 FLTK/1.3.8

Flask

Flask is a lightweight WSGI web application framework. It is designed to make getting started quick and easy, with the ability to scale up to complex applications. This module includes the Flask extensions: Flask-Cors

Versions Environment loading command (via Lmod)
1.1.4
GCCcore/10.3.0 Flask/1.1.4

FlexiBLAS

FlexiBLAS is a wrapper library that enables the exchange of the BLAS and LAPACK implementation used by a program without recompiling or relinking it.

Versions Environment loading command (via Lmod)
3.4.5
GCC/14.2.0 FlexiBLAS/3.4.5
3.3.1
NVHPC/24.5-CUDA-12.4.0 FlexiBLAS/3.3.1
3.3.1
GCC/13.2.0 FlexiBLAS/3.3.1
3.3.1
GCC/12.3.0 FlexiBLAS/3.3.1
3.2.1
GCC/12.2.0 FlexiBLAS/3.2.1
3.2.0
GCC/11.3.0 FlexiBLAS/3.2.0
3.0.4
GCC/11.2.0 FlexiBLAS/3.0.4
3.0.4
GCC/10.3.0 FlexiBLAS/3.0.4

FriBidi

The Free Implementation of the Unicode Bidirectional Algorithm.

Versions Environment loading command (via Lmod)
1.0.15
GCCcore/13.3.0 FriBidi/1.0.15
1.0.13
GCCcore/13.2.0 FriBidi/1.0.13
1.0.12
GCCcore/12.3.0 FriBidi/1.0.12
1.0.12
GCCcore/11.3.0 FriBidi/1.0.12
1.0.10
GCCcore/11.2.0 FriBidi/1.0.10
1.0.10
GCCcore/10.3.0 FriBidi/1.0.10

GCC

The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).

Versions Environment loading command (via Lmod)
14.2.0
GCC/14.2.0
13.2.0
GCC/13.2.0
12.3.0
GCC/12.3.0
12.2.0
GCC/12.2.0
11.3.0
GCC/11.3.0
11.2.0
GCC/11.2.0
10.3.0
GCC/10.3.0

GCCcore

The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).

Versions Environment loading command (via Lmod)
14.3.0
GCCcore/14.3.0
14.2.0
GCCcore/14.2.0
13.3.0
GCCcore/13.3.0
13.2.0
GCCcore/13.2.0
12.3.0
GCCcore/12.3.0
12.2.0
GCCcore/12.2.0
11.3.0
GCCcore/11.3.0
11.2.0
GCCcore/11.2.0
10.3.0
GCCcore/10.3.0

GDAL

GDAL is a translator library for raster geospatial data formats that is released under an X/MIT style Open Source license by the Open Source Geospatial Foundation. As a library, it presents a single abstract data model to the calling application for all supported formats. It also comes with a variety of useful commandline utilities for data translation and processing.

Versions Environment loading command (via Lmod)
3.7.1
GCC/12.3.0 OpenMPI/4.1.5 GDAL/3.7.1
3.5.0
GCC/11.3.0 OpenMPI/4.1.4 GDAL/3.5.0

GDB

The GNU Project Debugger

Versions Environment loading command (via Lmod)
13.2
GDB/13.2
13.2
GCCcore/12.3.0 GDB/13.2

GDRCopy

A low-latency GPU memory copy library based on NVIDIA GPUDirect RDMA technology.

Versions Environment loading command (via Lmod)
2.4.4
GCCcore/14.2.0 GDRCopy/2.4.4
2.4
GCCcore/13.2.0 GDRCopy/2.4
2.3.1
GCCcore/12.3.0 GDRCopy/2.3.1
2.3
GCCcore/12.2.0 GDRCopy/2.3
2.3
GCCcore/11.3.0 GDRCopy/2.3
2.3
GCCcore/11.2.0 GDRCopy/2.3
2.2
GCCcore/10.3.0 GDRCopy/2.2

GEOS

GEOS (Geometry Engine - Open Source) is a C++ port of the Java Topology Suite (JTS)

Versions Environment loading command (via Lmod)
3.12.0
GCC/12.3.0 GEOS/3.12.0
3.10.3
GCC/11.3.0 GEOS/3.10.3

GLFW

GLFW is an Open Source, multi-platform library for OpenGL, OpenGL ES and Vulkan development on the desktop

Versions Environment loading command (via Lmod)
3.3.8
GCCcore/11.3.0 GLFW/3.3.8

GLM

OpenGL Mathematics (GLM) is a header only C++ mathematics library for graphics software based on the OpenGL Shading Language (GLSL) specifications.

Versions Environment loading command (via Lmod)
0.9.9.8
GCCcore/11.3.0 GLM/0.9.9.8

GLPK

The GLPK (GNU Linear Programming Kit) package is intended for solving large-scale linear programming (LP), mixed integer programming (MIP), and other related problems. It is a set of routines written in ANSI C and organized in the form of a callable library.

Versions Environment loading command (via Lmod)
5.0
GCCcore/12.3.0 GLPK/5.0
5.0
GCCcore/11.3.0 GLPK/5.0

GLib

GLib is one of the base libraries of the GTK+ project

Versions Environment loading command (via Lmod)
2.80.4
GCCcore/13.3.0 GLib/2.80.4
2.78.1
GCCcore/13.2.0 GLib/2.78.1
2.77.1
GCCcore/12.3.0 GLib/2.77.1
2.72.1
GCCcore/11.3.0 GLib/2.72.1
2.69.1
GCCcore/11.2.0 GLib/2.69.1
2.68.2
GCCcore/10.3.0 GLib/2.68.2

GMP

GMP is a free library for arbitrary precision arithmetic, operating on signed integers, rational numbers, and floating point numbers.

Versions Environment loading command (via Lmod)
6.3.0
GCCcore/13.2.0 GMP/6.3.0
6.2.1
GMP/6.2.1
6.2.1
GCCcore/12.3.0 GMP/6.2.1
6.2.1
GCCcore/12.2.0 GMP/6.2.1
6.2.1
GCCcore/11.3.0 GMP/6.2.1
6.2.1
GCCcore/11.2.0 GMP/6.2.1
6.2.1
GCCcore/10.3.0 GMP/6.2.1

GObject-Introspection

GObject introspection is a middleware layer between C libraries (using GObject) and language bindings. The C library can be scanned at compile time and generate a metadata file, in addition to the actual native C library. Then at runtime, language bindings can read this metadata and automatically provide bindings to call into the C library.

Versions Environment loading command (via Lmod)
1.80.1
GCCcore/13.3.0 GObject-Introspection/1.80.1
1.78.1
GCCcore/13.2.0 GObject-Introspection/1.78.1
1.76.1
GCCcore/12.3.0 GObject-Introspection/1.76.1
1.72.0
GCCcore/11.3.0 GObject-Introspection/1.72.0
1.68.0
GCCcore/11.2.0 GObject-Introspection/1.68.0
1.68.0
GCCcore/10.3.0 GObject-Introspection/1.68.0

GPUMD

GPUMD stands for Graphics Processing Units Molecular Dynamics. It is a general-purpose molecular dynamics (MD) package fully implemented on graphics processing units (GPU). In addition to several empirical interatomic potentials, it supports neuroevolution potential (NEP) models. GPUMD also allows one to construct the latter type of models using the nep executable.

Versions Environment loading command (via Lmod)
3.9.1-CUDA-11.7.0
GCC/11.3.0 OpenMPI/4.1.4 GPUMD/3.9.1-CUDA-11.7.0

GROMACS

GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. This is a CPU only build, containing both MPI and threadMPI binaries for both single and double precision. It also contains the gmxapi extension for the single precision MPI build.

Versions Environment loading command (via Lmod)
2024.4-CUDA-12.4.0
GCC/13.2.0 OpenMPI/4.1.6 GROMACS/2024.4-CUDA-12.4.0
2024.2-CUDA-12.1.1-SMP
GCC/12.3.0 GROMACS/2024.2-CUDA-12.1.1-SMP
2023.5-CUDA-12.4.0
GCC/13.2.0 OpenMPI/4.1.6 GROMACS/2023.5-CUDA-12.4.0
2023.5-CUDA-12.1.1
GCC/12.3.0 OpenMPI/4.1.5 GROMACS/2023.5-CUDA-12.1.1
2023.4-CUDA-12.1.1
GCC/12.3.0 OpenMPI/4.1.5 GROMACS/2023.4-CUDA-12.1.1
2023.3-CUDA-12.1.1
GCC/12.3.0 OpenMPI/4.1.5 GROMACS/2023.3-CUDA-12.1.1
2023.2-CUDA-11.7.0-AVX2-256
NVHPC/22.11-CUDA-11.7.0 GROMACS/2023.2-CUDA-11.7.0-AVX2-256
2022.3-CUDA-11.6.0-AVX2-256
GCC/11.2.0 OpenMPI/4.1.2 GROMACS/2022.3-CUDA-11.6.0-AVX2-256
2022-CUDA-11.6.0-AVX2-256
GCC/11.2.0 OpenMPI/4.1.2 GROMACS/2022-CUDA-11.6.0-AVX2-256

GSL

The GNU Scientific Library (GSL) is a numerical library for C and C++ programmers. The library provides a wide range of mathematical routines such as random number generators, special functions and least-squares fitting.

Versions Environment loading command (via Lmod)
2.7
GCC/11.3.0 GSL/2.7
2.7
GCC/11.2.0 GSL/2.7

GST-plugins-bad

GStreamer is a library for constructing graphs of media-handling components. The applications it supports range from simple Ogg/Vorbis playback, audio/video streaming to complex audio (mixing) and video (non-linear editing) processing.

Versions Environment loading command (via Lmod)
1.20.2
GCC/11.3.0 GST-plugins-bad/1.20.2

GST-plugins-base

GStreamer is a library for constructing graphs of media-handling components. The applications it supports range from simple Ogg/Vorbis playback, audio/video streaming to complex audio (mixing) and video (non-linear editing) processing.

Versions Environment loading command (via Lmod)
1.20.2
GCC/11.3.0 GST-plugins-base/1.20.2

GStreamer

GStreamer is a library for constructing graphs of media-handling components. The applications it supports range from simple Ogg/Vorbis playback, audio/video streaming to complex audio (mixing) and video (non-linear editing) processing.

Versions Environment loading command (via Lmod)
1.20.2
GCC/11.3.0 GStreamer/1.20.2

GTK2

The GTK+ 2 package contains libraries used for creating graphical user interfaces for applications.

Versions Environment loading command (via Lmod)
2.24.33
GCCcore/11.3.0 GTK2/2.24.33

GTK3

GTK+ is the primary library used to construct user interfaces in GNOME. It provides all the user interface controls, or widgets, used in a common graphical application. Its object-oriented API allows you to construct user interfaces without dealing with the low-level details of drawing and device interaction.

Versions Environment loading command (via Lmod)
3.24.39
GCCcore/13.2.0 GTK3/3.24.39
3.24.33
GCCcore/11.3.0 GTK3/3.24.33
3.24.29
GCCcore/10.3.0 GTK3/3.24.29

GTK4

GTK+ is the primary library used to construct user interfaces in GNOME. It provides all the user interface controls, or widgets, used in a common graphical application. Its object-oriented API allows you to construct user interfaces without dealing with the low-level details of drawing and device interaction.

Versions Environment loading command (via Lmod)
4.7.0
GCC/11.3.0 GTK4/4.7.0

Gdk-Pixbuf

The Gdk Pixbuf is a toolkit for image loading and pixel buffer manipulation. It is used by GTK+ 2 and GTK+ 3 to load and manipulate images. In the past it was distributed as part of GTK+ 2 but it was split off into a separate package in preparation for the change to GTK+ 3.

Versions Environment loading command (via Lmod)
2.42.10
GCCcore/13.2.0 Gdk-Pixbuf/2.42.10
2.42.8
GCCcore/11.3.0 Gdk-Pixbuf/2.42.8
2.42.6
GCCcore/11.2.0 Gdk-Pixbuf/2.42.6
2.42.6
GCCcore/10.3.0 Gdk-Pixbuf/2.42.6

Ghostscript

Ghostscript is a versatile processor for PostScript data with the ability to render PostScript to different targets. It used to be part of the cups printing stack, but is no longer used for that.

Versions Environment loading command (via Lmod)
10.03.1
GCCcore/13.3.0 Ghostscript/10.03.1
10.02.1
GCCcore/13.2.0 Ghostscript/10.02.1
9.56.1
GCCcore/11.3.0 Ghostscript/9.56.1
9.54.0
GCCcore/10.3.0 Ghostscript/9.54.0

GitPython

GitPython is a python library used to interact with Git repositories

Versions Environment loading command (via Lmod)
3.1.45
GCCcore/14.3.0 GitPython/3.1.45

GnuTLS

GnuTLS is a secure communications library implementing the SSL, TLS and DTLS protocols and technologies around them. It provides a simple C language application programming interface (API) to access the secure communications protocols as well as APIs to parse and write X.509, PKCS #12, OpenPGP and other required structures. It is aimed to be portable and efficient with focus on security and interoperability.

Versions Environment loading command (via Lmod)
3.7.3
GnuTLS/3.7.3

Go

Go is an open source programming language that makes it easy to build simple, reliable, and efficient software.

Versions Environment loading command (via Lmod)
1.22.4
Go/1.22.4
1.22.1
Go/1.22.1
1.20.4
Go/1.20.4
1.17.3
Go/1.17.3

Graphene

Graphene is a thin layer of types for graphic libraries

Versions Environment loading command (via Lmod)
1.10.8
GCCcore/11.3.0 Graphene/1.10.8

Graphviz

Graphviz is open source graph visualization software. Graph visualization is a way of representing structural information as diagrams of abstract graphs and networks. It has important applications in networking, bioinformatics, software engineering, database and web design, machine learning, and in visual interfaces for other technical domains.

Versions Environment loading command (via Lmod)
13.1.2-minimal
GCCcore/14.2.0 Graphviz/13.1.2-minimal

Greenlet

The greenlet package is a spin-off of Stackless, a version of CPython that supports micro-threads called "tasklets". Tasklets run pseudo-concurrently (typically in a single or a few OS-level threads) and are synchronized with data exchanges on "channels". A "greenlet", on the other hand, is a still more primitive notion of micro-thread with no implicit scheduling; coroutines, in other words. This is useful when you want to control exactly when your code runs.

Versions Environment loading command (via Lmod)
3.0.3
GCCcore/13.2.0 Greenlet/3.0.3

Guile

Guile is a programming language, designed to help programmers create flexible applications that can be extended by users or other programmers with plug-ins, modules, or scripts.

Versions Environment loading command (via Lmod)
3.0.7
Guile/3.0.7

HDF

HDF (also known as HDF4) is a library and multi-object file format for storing and managing data between machines.

Versions Environment loading command (via Lmod)
4.2.16-2
GCCcore/12.3.0 HDF/4.2.16-2
4.2.15
GCCcore/11.3.0 HDF/4.2.15

HDF5

HDF5 is a data model, library, and file format for storing and managing data. It supports an unlimited variety of datatypes, and is designed for flexible and efficient I/O and for high volume and complex data.

Versions Environment loading command (via Lmod)
1.14.3
NVHPC/24.5-CUDA-12.4.0 OpenMPI/4.1.6 HDF5/1.14.3
1.14.0
GCC/12.3.0 OpenMPI/4.1.5 HDF5/1.14.0
1.12.2-threadsafe
GCC/11.3.0 OpenMPI/4.1.4-mpi-thread-multiple HDF5/1.12.2-threadsafe
1.12.2
NVHPC/22.11-CUDA-11.7.0 OpenMPI/4.1.4 HDF5/1.12.2
1.12.2
GCC/11.3.0 OpenMPI/4.1.4 HDF5/1.12.2
1.12.1
GCC/11.2.0 OpenMPI/4.1.2 HDF5/1.12.1
1.10.7
GCC/10.3.0 OpenMPI/4.1.1 HDF5/1.10.7

HH-suite

The HH-suite is an open-source software package for sensitive protein sequence searching based on the pairwise alignment of hidden Markov models (HMMs).

Versions Environment loading command (via Lmod)
3.3.0
HH-suite/3.3.0
3.3.0
GCC/11.2.0 OpenMPI/4.1.2 HH-suite/3.3.0

HMMER

HMMER is used for searching sequence databases for homologs of protein sequences, and for making protein sequence alignments. It implements methods using probabilistic models called profile hidden Markov models (profile HMMs). Compared to BLAST, FASTA, and other sequence alignment and database search tools based on older scoring methodology, HMMER aims to be significantly more accurate and more able to detect remote homologs because of the strength of its underlying mathematical models. In the past, this strength came at significant computational expense, but in the new HMMER3 project, HMMER is now essentially as fast as BLAST.

Versions Environment loading command (via Lmod)
3.3.2
GCC/11.2.0 OpenMPI/4.1.2 HMMER/3.3.2

HTSlib

A C library for reading/writing high-throughput sequencing data. This package includes the utilities bgzip and tabix

Versions Environment loading command (via Lmod)
1.14
GCC/11.2.0 HTSlib/1.14

HarfBuzz

HarfBuzz is an OpenType text shaping engine.

Versions Environment loading command (via Lmod)
9.0.0
GCCcore/13.3.0 HarfBuzz/9.0.0
8.2.2
GCCcore/13.2.0 HarfBuzz/8.2.2
5.3.1
GCCcore/12.3.0 HarfBuzz/5.3.1
4.2.1
GCCcore/11.3.0 HarfBuzz/4.2.1
2.8.2
GCCcore/11.2.0 HarfBuzz/2.8.2
2.8.1
GCCcore/10.3.0 HarfBuzz/2.8.1

Horovod

Horovod is a distributed training framework for TensorFlow.

Versions Environment loading command (via Lmod)
0.23.0-CUDA-11.3.1-PyTorch-1.10.0-TensorFlow-2.5.3
GCC/10.3.0 OpenMPI/4.1.1 Horovod/0.23.0-CUDA-11.3.1-PyTorch-1.10.0-TensorFlow-2.5.3

Hypre

Hypre is a library for solving large, sparse linear systems of equations on massively parallel computers. The problems of interest arise in the simulation codes being developed at LLNL and elsewhere to study physical phenomena in the defense, environmental, energy, and biological sciences.

Versions Environment loading command (via Lmod)
2.33.0
GCC/12.3.0 OpenMPI/4.1.5 Hypre/2.33.0
2.29.0
GCC/12.3.0 OpenMPI/4.1.5 Hypre/2.29.0
2.25.0
GCC/11.3.0 OpenMPI/4.1.4 Hypre/2.25.0

ICU

ICU is a mature, widely used set of C/C++ and Java libraries providing Unicode and Globalization support for software applications.

Versions Environment loading command (via Lmod)
77.1
GCCcore/14.3.0 ICU/77.1
76.1
GCCcore/14.2.0 ICU/76.1
75.1
GCCcore/13.3.0 ICU/75.1
74.1
GCCcore/13.2.0 ICU/74.1
73.2
GCCcore/12.3.0 ICU/73.2
71.1
GCCcore/11.3.0 ICU/71.1
69.1
GCCcore/11.2.0 ICU/69.1
69.1
GCCcore/10.3.0 ICU/69.1

IPython

IPython provides a rich architecture for interactive computing with: Powerful interactive shells (terminal and Qt-based). A browser-based notebook with support for code, text, mathematical expressions, inline plots and other rich media. Support for interactive data visualization and use of GUI toolkits. Flexible, embeddable interpreters to load into your own projects. Easy to use, high performance tools for parallel computing.

Versions Environment loading command (via Lmod)
9.4.0
GCCcore/14.3.0 IPython/9.4.0
8.17.2
GCCcore/13.2.0 IPython/8.17.2
8.14.0
GCCcore/12.3.0 IPython/8.14.0
8.5.0
GCCcore/11.3.0 IPython/8.5.0
7.25.0
GCCcore/10.3.0 IPython/7.25.0

ISA-L

Intelligent Storage Acceleration Library

Versions Environment loading command (via Lmod)
2.30.0
GCCcore/14.2.0 ISA-L/2.30.0

ISL

isl is a library for manipulating sets and relations of integer points bounded by linear constraints.

Versions Environment loading command (via Lmod)
0.26
ISL/0.26
0.26
GCCcore/12.3.0 ISL/0.26

ImageMagick

ImageMagick is a software suite to create, edit, compose, or convert bitmap images

Versions Environment loading command (via Lmod)
7.1.0-37
GCCcore/11.3.0 ImageMagick/7.1.0-37

Imath

Imath is a C++ and python library of 2D and 3D vector, matrix, and math operations for computer graphics

Versions Environment loading command (via Lmod)
3.1.7
GCCcore/12.3.0 Imath/3.1.7
3.1.5
GCCcore/11.3.0 Imath/3.1.5

JasPer

The JasPer Project is an open-source initiative to provide a free software-based reference implementation of the codec specified in the JPEG-2000 Part-1 standard.

Versions Environment loading command (via Lmod)
4.0.0
GCCcore/13.2.0 JasPer/4.0.0
4.0.0
GCCcore/12.3.0 JasPer/4.0.0
2.0.33
GCCcore/11.3.0 JasPer/2.0.33
2.0.28
GCCcore/10.3.0 JasPer/2.0.28

Java

Java Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers.

Versions Environment loading command (via Lmod)
21.0.7
Java/21.0.7
13.0.2
Java/13.0.2
11.0.2
Java/11.0.2

JsonCpp

JsonCpp is a C++ library that allows manipulating JSON values, including serialization and deserialization to and from strings. It can also preserve existing comment in unserialization/serialization steps, making it a convenient format to store user input files.

Versions Environment loading command (via Lmod)
1.9.5
GCCcore/11.3.0 JsonCpp/1.9.5
1.9.4
GCCcore/11.2.0 JsonCpp/1.9.4
1.9.4
GCCcore/10.3.0 JsonCpp/1.9.4

Julia

Julia is a high-level, high-performance dynamic programming language for numerical computing

Versions Environment loading command (via Lmod)
1.11.3-linux-x86_64
Julia/1.11.3-linux-x86_64

JupyterHub

JupyterHub is a multiuser version of the Jupyter (IPython) notebook designed for centralized deployments in companies, university classrooms and research labs.

Versions Environment loading command (via Lmod)
4.1.5
GCCcore/13.2.0 JupyterHub/4.1.5
4.0.2
GCCcore/12.3.0 JupyterHub/4.0.2

JupyterLab

JupyterLab is the next-generation user interface for Project Jupyter offering all the familiar building blocks of the classic Jupyter Notebook (notebook, terminal, text editor, file browser, rich outputs, etc.) in a flexible and powerful user interface. JupyterLab will eventually replace the classic Jupyter Notebook.

Versions Environment loading command (via Lmod)
4.4.9
GCCcore/14.3.0 JupyterLab/4.4.9
4.2.0
GCCcore/13.2.0 JupyterLab/4.2.0
4.0.5
GCCcore/12.3.0 JupyterLab/4.0.5
3.5.0
GCCcore/11.3.0 JupyterLab/3.5.0
3.2.8
GCCcore/10.3.0 JupyterLab/3.2.8
3.2.1
GCCcore/11.3.0 JupyterLab/3.2.1

JupyterLab-git

A JupyterLab extension for version control using Git

Versions Environment loading command (via Lmod)
0.51.2
GCCcore/14.3.0 JupyterLab-git/0.51.2

JupyterNotebook

The Jupyter Notebook is the original web application for creating and sharing computational documents. It offers a simple, streamlined, document-centric experience.

Versions Environment loading command (via Lmod)
7.4.7
GCCcore/14.3.0 JupyterNotebook/7.4.7
7.2.0
GCCcore/13.2.0 JupyterNotebook/7.2.0

KaHIP

The graph partitioning framework KaHIP -- Karlsruhe High Quality Partitioning.

Versions Environment loading command (via Lmod)
3.16
GCC/12.3.0 OpenMPI/4.1.5 KaHIP/3.16
3.14
GCC/11.3.0 OpenMPI/4.1.4 KaHIP/3.14

LAME

LAME is a high quality MPEG Audio Layer III (MP3) encoder licensed under the LGPL.

Versions Environment loading command (via Lmod)
3.100
GCCcore/13.2.0 LAME/3.100
3.100
GCCcore/12.3.0 LAME/3.100
3.100
GCCcore/11.3.0 LAME/3.100
3.100
GCCcore/10.3.0 LAME/3.100

LAMMPS

LAMMPS Molecular Dynamics Simulator

Versions Environment loading command (via Lmod)
30Jul2021-CUDA-11.6.0
GCC/11.2.0 OpenMPI/4.1.2 LAMMPS/30Jul2021-CUDA-11.6.0

LERC

LERC is an open-source image or raster format which supports rapid encoding and decoding for any pixel type (not just RGB or Byte). Users set the maximum compression error per pixel while encoding, so the precision of the original input image is preserved (within user defined error bounds).

Versions Environment loading command (via Lmod)
4.0.0
GCCcore/12.3.0 LERC/4.0.0

LKH

LKH-3 is an extension of LKH-2 for solving constrained traveling salesman and vehicle routing problems.

Versions Environment loading command (via Lmod)
3.0.13
GCCcore/13.2.0 LKH/3.0.13

LLVM

The LLVM Core libraries provide a modern source- and target-independent optimizer, along with code generation support for many popular CPUs (as well as some less common ones!) These libraries are built around a well specified code representation known as the LLVM intermediate representation ("LLVM IR

Versions Environment loading command (via Lmod)
16.0.6
GCCcore/13.2.0 LLVM/16.0.6
16.0.6
GCCcore/12.3.0 LLVM/16.0.6
14.0.6-llvmlite
GCCcore/12.3.0 LLVM/14.0.6-llvmlite
14.0.3
LLVM/14.0.3
14.0.3
GCCcore/11.3.0 LLVM/14.0.3
12.0.1
GCCcore/11.2.0 LLVM/12.0.1
11.1.0
GCCcore/10.3.0 LLVM/11.1.0

LMDB

LMDB is a fast, memory-efficient database. With memory-mapped files, it has the read performance of a pure in-memory database while retaining the persistence of standard disk-based databases.

Versions Environment loading command (via Lmod)
0.9.29
GCCcore/11.3.0 LMDB/0.9.29
0.9.29
GCCcore/11.2.0 LMDB/0.9.29
0.9.28
GCCcore/10.3.0 LMDB/0.9.28

Leptonica

Leptonica is a collection of pedagogically-oriented open source software that is broadly useful for image processing and image analysis applications.

Versions Environment loading command (via Lmod)
1.85.0
GCCcore/13.3.0 Leptonica/1.85.0
1.85.0
GCCcore/13.2.0 Leptonica/1.85.0
1.82.0
GCCcore/10.3.0 Leptonica/1.82.0

LibTIFF

tiff: Library and tools for reading and writing TIFF data files

Versions Environment loading command (via Lmod)
4.7.0
GCCcore/14.2.0 LibTIFF/4.7.0
4.6.0
GCCcore/13.3.0 LibTIFF/4.6.0
4.6.0
GCCcore/13.2.0 LibTIFF/4.6.0
4.5.0
GCCcore/12.3.0 LibTIFF/4.5.0
4.3.0
LibTIFF/4.3.0
4.3.0
GCCcore/11.3.0 LibTIFF/4.3.0
4.3.0
GCCcore/11.2.0 LibTIFF/4.3.0
4.2.0
GCCcore/10.3.0 LibTIFF/4.2.0

Libint

Libint library is used to evaluate the traditional (electron repulsion) and certain novel two-body matrix elements (integrals) over Cartesian Gaussian functions used in modern atomic and molecular theory.

Versions Environment loading command (via Lmod)
2.7.2-lmax-6-cp2k
GCC/11.3.0 Libint/2.7.2-lmax-6-cp2k
2.7.2-lmax-6-cp2k
GCC/11.2.0 OpenMPI/4.1.2 Libint/2.7.2-lmax-6-cp2k

LittleCMS

Little CMS intends to be an OPEN SOURCE small-footprint color management engine, with special focus on accuracy and performance.

Versions Environment loading command (via Lmod)
2.17
GCCcore/14.2.0 LittleCMS/2.17
2.13.1
GCCcore/11.3.0 LittleCMS/2.13.1

Lua

Lua is a powerful, fast, lightweight, embeddable scripting language. Lua combines simple procedural syntax with powerful data description constructs based on associative arrays and extensible semantics. Lua is dynamically typed, runs by interpreting bytecode for a register-based virtual machine, and has automatic memory management with incremental garbage collection, making it ideal for configuration, scripting, and rapid prototyping.

Versions Environment loading command (via Lmod)
5.4.6
GCCcore/12.3.0 Lua/5.4.6
5.4.4
GCCcore/12.2.0 Lua/5.4.4
5.4.4
GCCcore/11.3.0 Lua/5.4.4

M4

GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible although it has some extensions (for example, handling more than 9 positional parameters to macros). GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.

Versions Environment loading command (via Lmod)
1.4.20
M4/1.4.20
1.4.20
GCCcore/14.3.0 M4/1.4.20
1.4.19
M4/1.4.19
1.4.19
GCCcore/14.2.0 M4/1.4.19
1.4.19
GCCcore/13.3.0 M4/1.4.19
1.4.19
GCCcore/13.2.0 M4/1.4.19
1.4.19
GCCcore/12.3.0 M4/1.4.19
1.4.19
GCCcore/12.2.0 M4/1.4.19
1.4.19
GCCcore/11.3.0 M4/1.4.19
1.4.19
GCCcore/11.2.0 M4/1.4.19
1.4.18
M4/1.4.18
1.4.18
GCCcore/10.3.0 M4/1.4.18

MATLAB

MATLAB: The Language of Technical Computing

Versions Environment loading command (via Lmod)
R2024b
MATLAB/R2024b
R2023b
MATLAB/R2023b
R2023a
MATLAB/R2023a

MBROLA

MBROLA is a speech synthesizer based on the concatenation of diphones. It takes a list of phonemes as input, together with prosodic information (duration of phonemes and a piecewise linear description of pitch), and produces speech samples on 16 bits (linear), at the sampling frequency of the diphone database. MBROLA voices project provides list of MBROLA speech synthesizer voices. It is intended to provide easier collaboration and automatic updates for individual users and packagers.

Versions Environment loading command (via Lmod)
3.3-voices-20200330
GCCcore/12.3.0 MBROLA/3.3-voices-20200330

MDTraj

Read, write and analyze MD trajectories with only a few lines of Python code.

Versions Environment loading command (via Lmod)
1.9.9
GCC/12.3.0 MDTraj/1.9.9

METIS

METIS is a set of serial programs for partitioning graphs, partitioning finite element meshes, and producing fill reducing orderings for sparse matrices. The algorithms implemented in METIS are based on the multilevel recursive-bisection, multilevel k-way, and multi-constraint partitioning schemes.

Versions Environment loading command (via Lmod)
5.1.0
GCCcore/12.3.0 METIS/5.1.0
5.1.0
GCCcore/11.3.0 METIS/5.1.0
5.1.0
GCCcore/11.2.0 METIS/5.1.0

MMseqs2

MMseqs2: ultra fast and sensitive search and clustering suite

Versions Environment loading command (via Lmod)
17-b804f-CUDA-12.4.0
GCCcore/13.2.0 MMseqs2/17-b804f-CUDA-12.4.0

MPC

Gnu Mpc is a C library for the arithmetic of complex numbers with arbitrarily high precision and correct rounding of the result. It extends the principles of the IEEE-754 standard for fixed precision real floating point numbers to complex numbers, providing well-defined semantics for every operation. At the same time, speed of operation at high precision is a major design goal.

Versions Environment loading command (via Lmod)
1.3.1
MPC/1.3.1
1.3.1
GCCcore/12.3.0 MPC/1.3.1

MPFR

The MPFR library is a C library for multiple-precision floating-point computations with correct rounding.

Versions Environment loading command (via Lmod)
4.2.0
MPFR/4.2.0
4.2.0
GCCcore/12.3.0 MPFR/4.2.0
4.1.0
GCCcore/11.3.0 MPFR/4.1.0
4.1.0
GCCcore/10.3.0 MPFR/4.1.0

MUMPS

A parallel sparse direct solver

Versions Environment loading command (via Lmod)
5.6.1-metis
GCC/12.3.0 OpenMPI/4.1.5 MUMPS/5.6.1-metis
5.5.1-metis
GCC/11.3.0 OpenMPI/4.1.4 MUMPS/5.5.1-metis

Mako

A super-fast templating language that borrows the best ideas from the existing templating languages

Versions Environment loading command (via Lmod)
1.2.4
GCCcore/13.2.0 Mako/1.2.4
1.2.4
GCCcore/12.3.0 Mako/1.2.4
1.2.0
Mako/1.2.0
1.2.0
GCCcore/11.3.0 Mako/1.2.0
1.1.4
GCCcore/11.2.0 Mako/1.1.4
1.1.4
GCCcore/10.3.0 Mako/1.1.4

Mesa

Mesa is an open-source implementation of the OpenGL specification - a system for rendering interactive 3D graphics.

Versions Environment loading command (via Lmod)
25.2.1
GCCcore/13.2.0 Mesa/25.2.1
23.1.9
GCCcore/13.2.0 Mesa/23.1.9
23.1.4
GCCcore/12.3.0 Mesa/23.1.4
22.0.3
Mesa/22.0.3
22.0.3
GCCcore/11.3.0 Mesa/22.0.3
21.1.7
GCCcore/11.2.0 Mesa/21.1.7
21.1.1
GCCcore/10.3.0 Mesa/21.1.1

Meson

Meson is a cross-platform build system designed to be both as fast and as user friendly as possible.

Versions Environment loading command (via Lmod)
1.8.2
GCCcore/14.3.0 Meson/1.8.2
1.6.1
GCCcore/14.2.0 Meson/1.6.1
1.6.1
GCCcore/13.2.0 Meson/1.6.1
1.4.0
GCCcore/13.3.0 Meson/1.4.0
1.2.3
GCCcore/13.2.0 Meson/1.2.3
1.1.1
GCCcore/12.3.0 Meson/1.1.1
0.64.0
GCCcore/12.2.0 Meson/0.64.0
0.62.1
Meson/0.62.1
0.62.1
GCCcore/11.3.0 Meson/0.62.1
0.58.2
GCCcore/11.2.0 Meson/0.58.2
0.58.0
GCCcore/10.3.0 Meson/0.58.0

MinIO-Client

MinIO Client (mc) provides a modern alternative to UNIX commands like ls, cat, cp, mirror, diff, find etc. It supports filesystems and Amazon S3 compatible cloud storage service (AWS Signature v2 and v4).

Versions Environment loading command (via Lmod)
2024-07-31T15-58-33Z
MinIO-Client/2024-07-31T15-58-33Z

Miniconda3

Miniconda is a free minimal installer for conda. It is a small, bootstrap version of Anaconda that includes only conda, Python, the packages they depend on, and a small number of other useful packages.

Versions Environment loading command (via Lmod)
23.3.1-0
Miniconda3/23.3.1-0
4.9.2
Miniconda3/4.9.2

MotionCor2

MotionCor2 correct anisotropic image motion at the single pixel level across the whole frame, suitable for both single particle and tomographic images. Iterative, patch-based motion detection is combined with spatial and temporal constraints and dose weighting. Cite publication: Shawn Q. Zheng, Eugene Palovcak, Jean-Paul Armache, Yifan Cheng and David A. Agard (2016) Anisotropic Correction of Beam-induced Motion for Improved Single-particle Electron Cryo-microscopy, Nature Methods, submitted. BioArxiv: https://biorxiv.org/content/early/2016/07/04/061960

Versions Environment loading command (via Lmod)
1.4.5
GCCcore/11.3.0 MotionCor2/1.4.5

MuJoCo

MuJoCo stands for Multi-Joint dynamics with Contact. It is a general purpose physics engine that aims to facilitate research and development in robotics, biomechanics, graphics and animation, machine learning, and other areas which demand fast and accurate simulation of articulated structures interacting with their environment.

Versions Environment loading command (via Lmod)
2.2.2
GCCcore/11.3.0 MuJoCo/2.2.2

NAMD

NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems.

Versions Environment loading command (via Lmod)
3.0b3-Linux-x86_64-multicore-CUDA
NAMD/3.0b3-Linux-x86_64-multicore-CUDA
2.14
GCC/11.3.0 NAMD/2.14
2.14
GCC/11.2.0 OpenMPI/4.1.2 NAMD/2.14

NASM

NASM: General-purpose x86 assembler

Versions Environment loading command (via Lmod)
2.16.03
GCCcore/14.2.0 NASM/2.16.03
2.16.03
GCCcore/13.3.0 NASM/2.16.03
2.16.01
GCCcore/13.2.0 NASM/2.16.01
2.16.01
GCCcore/12.3.0 NASM/2.16.01
2.15.05
NASM/2.15.05
2.15.05
GCCcore/11.3.0 NASM/2.15.05
2.15.05
GCCcore/11.2.0 NASM/2.15.05
2.15.05
GCCcore/10.3.0 NASM/2.15.05

NCCL

The NVIDIA Collective Communications Library (NCCL) implements multi-GPU and multi-node collective communication primitives that are performance optimized for NVIDIA GPUs.

Versions Environment loading command (via Lmod)
2.20.5-CUDA-12.4.0
GCCcore/13.2.0 NCCL/2.20.5-CUDA-12.4.0
2.18.3-CUDA-12.1.1
GCCcore/12.3.0 NCCL/2.18.3-CUDA-12.1.1
2.16.2-CUDA-12.0.0
GCCcore/12.2.0 NCCL/2.16.2-CUDA-12.0.0
2.12.12-CUDA-11.7.0
GCCcore/11.3.0 NCCL/2.12.12-CUDA-11.7.0
2.10.3-CUDA-11.6.0
GCCcore/11.2.0 NCCL/2.10.3-CUDA-11.6.0
2.10.3-CUDA-11.3.1
GCCcore/10.3.0 NCCL/2.10.3-CUDA-11.3.1

NLopt

NLopt is a free/open-source library for nonlinear optimization, providing a common interface for a number of different free optimization routines available online as well as original implementations of various other algorithms.

Versions Environment loading command (via Lmod)
2.7.1
GCCcore/11.3.0 NLopt/2.7.1

NSPR

Netscape Portable Runtime (NSPR) provides a platform-neutral API for system level and libc-like functions.

Versions Environment loading command (via Lmod)
4.35
GCCcore/13.2.0 NSPR/4.35
4.35
GCCcore/12.3.0 NSPR/4.35
4.34
GCCcore/11.3.0 NSPR/4.34

NSS

Network Security Services (NSS) is a set of libraries designed to support cross-platform development of security-enabled client and server applications.

Versions Environment loading command (via Lmod)
3.94
GCCcore/13.2.0 NSS/3.94
3.89.1
GCCcore/12.3.0 NSS/3.89.1
3.79
GCCcore/11.3.0 NSS/3.79

NTPoly

is a massively parallel library for computing the functions of sparse, symmetric matrices based on polynomial expansions. For sufficiently sparse matrices, most of the matrix functions in NTPoly can be computed in linear time.

Versions Environment loading command (via Lmod)
2.7.0
GCC/11.3.0 OpenMPI/4.1.4 NTPoly/2.7.0
2.7.0
GCC/11.2.0 OpenMPI/4.1.2 NTPoly/2.7.0

NVHPC

C, C++ and Fortran compilers included with the NVIDIA HPC SDK (previously: PGI)

Versions Environment loading command (via Lmod)
24.5-CUDA-12.4.0
NVHPC/24.5-CUDA-12.4.0
23.7-CUDA-12.1.1
NVHPC/23.7-CUDA-12.1.1
23.1-CUDA-12.0.0
NVHPC/23.1-CUDA-12.0.0
22.11-CUDA-11.7.0
NVHPC/22.11-CUDA-11.7.0
22.7
NVHPC/22.7

NiBabel

NiBabel provides read/write access to some common medical and neuroimaging file formats, including: ANALYZE (plain, SPM99, SPM2 and later), GIFTI, NIfTI1, NIfTI2, MINC1, MINC2, MGH and ECAT as well as Philips PAR/REC. We can read and write Freesurfer geometry, and read Freesurfer morphometry and annotation files. There is some very limited support for DICOM. NiBabel is the successor of PyNIfTI.

Versions Environment loading command (via Lmod)
3.2.1
GCC/10.3.0 OpenMPI/4.1.1 NiBabel/3.2.1

Ninja

Ninja is a small build system with a focus on speed.

Versions Environment loading command (via Lmod)
1.13.0
GCCcore/14.3.0 Ninja/1.13.0
1.12.1
GCCcore/14.2.0 Ninja/1.12.1
1.12.1
GCCcore/13.3.0 Ninja/1.12.1
1.11.1
GCCcore/13.2.0 Ninja/1.11.1
1.11.1
GCCcore/12.3.0 Ninja/1.11.1
1.11.1
GCCcore/12.2.0 Ninja/1.11.1
1.10.2
Ninja/1.10.2
1.10.2
GCCcore/11.3.0 Ninja/1.10.2
1.10.2
GCCcore/11.2.0 Ninja/1.10.2
1.10.2
GCCcore/10.3.0 Ninja/1.10.2

OSU-Micro-Benchmarks

OSU Micro-Benchmarks

Versions Environment loading command (via Lmod)
7.3
intel-compilers/2022.1.0 impi/2021.6.0 OSU-Micro-Benchmarks/7.3
7.3
GCC/12.3.0 OpenMPI/4.1.5 OSU-Micro-Benchmarks/7.3
7.1-1
GCC/12.3.0 OpenMPI/4.1.5 OSU-Micro-Benchmarks/7.1-1
5.9-CUDA-11.6.0
GCC/11.2.0 OpenMPI/4.1.2 OSU-Micro-Benchmarks/5.9-CUDA-11.6.0
5.9-CUDA-11.3.1
GCC/10.3.0 OpenMPI/4.1.1 OSU-Micro-Benchmarks/5.9-CUDA-11.3.1

OpenBLAS

OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version.

Versions Environment loading command (via Lmod)
0.3.29
GCC/14.2.0 OpenBLAS/0.3.29
0.3.24
NVHPC/24.5-CUDA-12.4.0 OpenBLAS/0.3.24
0.3.24
GCC/13.2.0 OpenBLAS/0.3.24
0.3.23
GCC/12.3.0 OpenBLAS/0.3.23
0.3.21
GCC/12.2.0 OpenBLAS/0.3.21
0.3.20
GCC/11.3.0 OpenBLAS/0.3.20
0.3.18
GCC/11.2.0 OpenBLAS/0.3.18
0.3.15
GCC/10.3.0 OpenBLAS/0.3.15

OpenCV

OpenCV (Open Source Computer Vision Library) is an open source computer vision and machine learning software library. OpenCV was built to provide a common infrastructure for computer vision applications and to accelerate the use of machine perception in the commercial products. Includes extra modules for OpenCV from the contrib repository.

Versions Environment loading command (via Lmod)
4.6.0-CUDA-11.7.0-contrib
GCC/11.3.0 OpenMPI/4.1.4 OpenCV/4.6.0-CUDA-11.7.0-contrib
4.5.3-CUDA-11.3.1-contrib
GCC/10.3.0 OpenMPI/4.1.1 OpenCV/4.5.3-CUDA-11.3.1-contrib

OpenEXR

OpenEXR is a high dynamic-range (HDR) image file format developed by Industrial Light & Magic for use in computer imaging applications

Versions Environment loading command (via Lmod)
3.1.7
GCCcore/12.3.0 OpenEXR/3.1.7
3.1.5
GCCcore/11.3.0 OpenEXR/3.1.5
3.0.1
GCCcore/10.3.0 OpenEXR/3.0.1

OpenFOAM

OpenFOAM is a free, open source CFD software package. OpenFOAM has an extensive range of features to solve anything from complex fluid flows involving chemical reactions, turbulence and heat transfer, to solid dynamics and electromagnetics.

Versions Environment loading command (via Lmod)
v2312
GCC/12.3.0 OpenMPI/4.1.5 OpenFOAM/v2312

OpenJPEG

OpenJPEG is an open-source JPEG 2000 codec written in C language. It has been developed in order to promote the use of JPEG 2000, a still-image compression standard from the Joint Photographic Experts Group (JPEG). Since may 2015, it is officially recognized by ISO/IEC and ITU-T as a JPEG 2000 Reference Software.

Versions Environment loading command (via Lmod)
2.5.3
GCCcore/14.2.0 OpenJPEG/2.5.3
2.5.0
GCCcore/13.2.0 OpenJPEG/2.5.0
2.5.0
GCCcore/12.3.0 OpenJPEG/2.5.0
2.5.0
GCCcore/11.3.0 OpenJPEG/2.5.0

OpenMM

OpenMM is a toolkit for molecular simulation.

Versions Environment loading command (via Lmod)
8.0.0-CUDA-12.1.1
GCC/12.3.0 OpenMPI/4.1.5 OpenMM/8.0.0-CUDA-12.1.1

OpenMPI

The Open MPI Project is an open source MPI-3 implementation.

Versions Environment loading command (via Lmod)
5.0.7
GCC/14.2.0 OpenMPI/5.0.7
4.1.6
NVHPC/24.5-CUDA-12.4.0 OpenMPI/4.1.6
4.1.6
GCC/13.2.0 OpenMPI/4.1.6
4.1.5
NVHPC/23.1-CUDA-12.0.0 OpenMPI/4.1.5
4.1.5
intel-compilers/2023.1.0 OpenMPI/4.1.5
4.1.5
GCC/12.3.0 OpenMPI/4.1.5
4.1.4-mpi-thread-multiple
GCC/11.3.0 OpenMPI/4.1.4-mpi-thread-multiple
4.1.4
NVHPC/23.1-CUDA-12.0.0 OpenMPI/4.1.4
4.1.4
NVHPC/22.11-CUDA-11.7.0 OpenMPI/4.1.4
4.1.4
GCC/12.2.0 OpenMPI/4.1.4
4.1.4
GCC/11.3.0 OpenMPI/4.1.4
4.1.2-CUDA-11.6.0
GCC/11.2.0 OpenMPI/4.1.2-CUDA-11.6.0
4.1.2
NVHPC/22.7 OpenMPI/4.1.2
4.1.2
GCC/11.2.0 OpenMPI/4.1.2
4.1.1
GCC/10.3.0 OpenMPI/4.1.1

OpenPGM

OpenPGM is an open source implementation of the Pragmatic General Multicast (PGM) specification in RFC 3208 available at www.ietf.org. PGM is a reliable and scalable multicast protocol that enables receivers to detect loss, request retransmission of lost data, or notify an application of unrecoverable loss. PGM is a receiver-reliable protocol, which means the receiver is responsible for ensuring all data is received, absolving the sender of reception responsibility.

Versions Environment loading command (via Lmod)
5.2.122
GCCcore/14.3.0 OpenPGM/5.2.122
5.2.122
GCCcore/13.2.0 OpenPGM/5.2.122
5.2.122
GCCcore/12.3.0 OpenPGM/5.2.122
5.2.122
GCCcore/11.3.0 OpenPGM/5.2.122
5.2.122
GCCcore/10.3.0 OpenPGM/5.2.122

OpenSSL

The OpenSSL Project is a collaborative effort to develop a robust, commercial-grade, full-featured, and Open Source toolchain implementing the Secure Sockets Layer (SSL v2/v3) and Transport Layer Security (TLS v1) protocols as well as a full-strength general purpose cryptography library.

Versions Environment loading command (via Lmod)
3
OpenSSL/3
1.1
OpenSSL/1.1

PCRE

The PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl 5.

Versions Environment loading command (via Lmod)
8.45
GCCcore/12.3.0 PCRE/8.45
8.45
GCCcore/11.3.0 PCRE/8.45
8.45
GCCcore/11.2.0 PCRE/8.45
8.44
GCCcore/10.3.0 PCRE/8.44

PCRE2

The PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl 5.

Versions Environment loading command (via Lmod)
10.45
GCCcore/14.2.0 PCRE2/10.45
10.43
GCCcore/13.3.0 PCRE2/10.43
10.42
GCCcore/13.2.0 PCRE2/10.42
10.42
GCCcore/12.3.0 PCRE2/10.42
10.40
GCCcore/11.3.0 PCRE2/10.40
10.36
GCCcore/10.3.0 PCRE2/10.36

PETSc

PETSc, pronounced PET-see (the S is silent), is a suite of data structures and routines for the scalable (parallel) solution of scientific applications modeled by partial differential equations.

Versions Environment loading command (via Lmod)
3.20.3
GCC/12.3.0 OpenMPI/4.1.5 PETSc/3.20.3

PLUMED

PLUMED is an open source library for free energy calculations in molecular systems which works together with some of the most popular molecular dynamics engines. Free energy calculations can be performed as a function of many order parameters with a particular focus on biological problems, using state of the art methods such as metadynamics, umbrella sampling and Jarzynski-equation based steered MD. The software, written in C++, can be easily interfaced with both fortran and C/C++ codes.

Versions Environment loading command (via Lmod)
2.8.1
GCC/11.2.0 OpenMPI/4.1.2 PLUMED/2.8.1
2.8.0
GCC/11.3.0 OpenMPI/4.1.4 PLUMED/2.8.0
2.8.0
GCC/11.2.0 OpenMPI/4.1.2 PLUMED/2.8.0

PMIx

Process Management for Exascale Environments PMI Exascale (PMIx) represents an attempt to provide an extended version of the PMI standard specifically designed to support clusters up to and including exascale sizes. The overall objective of the project is not to branch the existing pseudo-standard definitions - in fact, PMIx fully supports both of the existing PMI-1 and PMI-2 APIs - but rather to (a) augment and extend those APIs to eliminate some current restrictions that impact scalability, and (b) provide a reference implementation of the PMI-server that demonstrates the desired level of scalability.

Versions Environment loading command (via Lmod)
5.0.6
GCCcore/14.2.0 PMIx/5.0.6
4.2.6
GCCcore/13.2.0 PMIx/4.2.6
4.2.4
GCCcore/12.3.0 PMIx/4.2.4
4.2.2
GCCcore/12.2.0 PMIx/4.2.2
4.1.2
GCCcore/11.3.0 PMIx/4.1.2
4.1.0
GCCcore/11.2.0 PMIx/4.1.0
3.2.3
GCCcore/10.3.0 PMIx/3.2.3

POV-Ray

The Persistence of Vision Raytracer, or POV-Ray, is a ray tracing program which generates images from a text-based scene description, and is available for a variety of computer platforms. POV-Ray is a high-quality, Free Software tool for creating stunning three-dimensional graphics. The source code is available for those wanting to do their own ports.

Versions Environment loading command (via Lmod)
3.7.0.10
GCC/11.3.0 POV-Ray/3.7.0.10

PROJ

Program proj is a standard Unix filter function which converts geographic longitude and latitude coordinates into cartesian coordinates

Versions Environment loading command (via Lmod)
9.2.0
GCCcore/12.3.0 PROJ/9.2.0
9.0.0
GCCcore/11.3.0 PROJ/9.0.0

PRRTE

PRRTE is the PMIx Reference RunTime Environment

Versions Environment loading command (via Lmod)
3.0.8
GCCcore/14.2.0 PRRTE/3.0.8

Pango

Pango is a library for laying out and rendering of text, with an emphasis on internationalization. Pango can be used anywhere that text layout is needed, though most of the work on Pango so far has been done in the context of the GTK+ widget toolkit. Pango forms the core of text and font handling for GTK+-2.x.

Versions Environment loading command (via Lmod)
1.54.0
GCCcore/13.3.0 Pango/1.54.0
1.51.0
GCCcore/13.2.0 Pango/1.51.0
1.50.14
GCCcore/12.3.0 Pango/1.50.14
1.50.7
GCCcore/11.3.0 Pango/1.50.7
1.48.8
GCCcore/11.2.0 Pango/1.48.8
1.48.5
GCCcore/10.3.0 Pango/1.48.5

ParMETIS

ParMETIS is an MPI-based parallel library that implements a variety of algorithms for partitioning unstructured graphs, meshes, and for computing fill-reducing orderings of sparse matrices. ParMETIS extends the functionality provided by METIS and includes routines that are especially suited for parallel AMR computations and large scale numerical simulations. The algorithms implemented in ParMETIS are based on the parallel multilevel k-way graph-partitioning, adaptive repartitioning, and parallel multi-constrained partitioning schemes.

Versions Environment loading command (via Lmod)
4.0.3
GCC/12.3.0 OpenMPI/4.1.5 ParMETIS/4.0.3
4.0.3
GCC/11.3.0 OpenMPI/4.1.4 ParMETIS/4.0.3

ParaView

ParaView is a scientific parallel visualizer.

Versions Environment loading command (via Lmod)
5.11.2
GCC/12.3.0 OpenMPI/4.1.5 ParaView/5.11.2
5.10.1-mpi
GCC/11.3.0 OpenMPI/4.1.4 ParaView/5.10.1-mpi

Perl

Larry Wall's Practical Extraction and Report Language Includes a small selection of extra CPAN packages for core functionality.

Versions Environment loading command (via Lmod)
5.40.2
GCCcore/14.3.0 Perl/5.40.2
5.40.0
GCCcore/14.2.0 Perl/5.40.0
5.38.2
GCCcore/13.3.0 Perl/5.38.2
5.38.0
Perl/5.38.0
5.38.0
GCCcore/13.2.0 Perl/5.38.0
5.36.1
GCCcore/12.3.0 Perl/5.36.1
5.36.0
GCCcore/12.2.0 Perl/5.36.0
5.34.1-minimal
GCCcore/11.3.0 Perl/5.34.1-minimal
5.34.1
Perl/5.34.1
5.34.1
GCCcore/11.3.0 Perl/5.34.1
5.34.0
GCCcore/11.2.0 Perl/5.34.0
5.32.1-minimal
GCCcore/10.3.0 Perl/5.32.1-minimal
5.32.1
GCCcore/10.3.0 Perl/5.32.1

Perl-bundle-CPAN

A set of common packages from CPAN

Versions Environment loading command (via Lmod)
5.40.0
GCCcore/14.2.0 Perl-bundle-CPAN/5.40.0
5.38.2
GCCcore/13.3.0 Perl-bundle-CPAN/5.38.2
5.38.0
GCCcore/13.2.0 Perl-bundle-CPAN/5.38.0
5.36.1
GCCcore/12.3.0 Perl-bundle-CPAN/5.36.1

Pillow

Pillow is the 'friendly PIL fork' by Alex Clark and Contributors. PIL is the Python Imaging Library by Fredrik Lundh and Contributors.

Versions Environment loading command (via Lmod)
11.3.0
GCCcore/14.2.0 Pillow/11.3.0
10.0.0
GCCcore/12.3.0 Pillow/10.0.0
9.1.1
GCCcore/11.3.0 Pillow/9.1.1
8.3.2
GCCcore/11.2.0 Pillow/8.3.2
8.2.0
GCCcore/10.3.0 Pillow/8.2.0

PnetCDF

Parallel netCDF: A Parallel I/O Library for NetCDF File Access

Versions Environment loading command (via Lmod)
1.12.3
GCC/12.3.0 OpenMPI/4.1.5 PnetCDF/1.12.3
1.12.3
GCC/11.2.0 OpenMPI/4.1.2 PnetCDF/1.12.3
1.12.2
GCC/11.2.0 OpenMPI/4.1.2 PnetCDF/1.12.2

PostgreSQL

PostgreSQL is a powerful, open source object-relational database system. It is fully ACID compliant, has full support for foreign keys, joins, views, triggers, and stored procedures (in multiple languages). It includes most SQL:2008 data types, including INTEGER, NUMERIC, BOOLEAN, CHAR, VARCHAR, DATE, INTERVAL, and TIMESTAMP. It also supports storage of binary large objects, including pictures, sounds, or video. It has native programming interfaces for C/C++, Java, .Net, Perl, Python, Ruby, Tcl, ODBC, among others, and exceptional documentation.

Versions Environment loading command (via Lmod)
16.1
GCCcore/13.2.0 PostgreSQL/16.1
16.1
GCCcore/12.3.0 PostgreSQL/16.1

PyCairo

Python bindings for the cairo library

Versions Environment loading command (via Lmod)
1.21.0
GCCcore/11.3.0 PyCairo/1.21.0

PyGObject

PyGObject is a Python package which provides bindings for GObject based libraries such as GTK, GStreamer, WebKitGTK, GLib, GIO and many more.

Versions Environment loading command (via Lmod)
3.42.1
GCCcore/11.3.0 PyGObject/3.42.1

PyMOL

PyMOL is a Python-enhanced molecular graphics tool. It excels at 3D visualization of proteins, small molecules, density, surfaces, and trajectories. It also includes molecular editing, ray tracing, and movies. Open Source PyMOL is free to everyone!

Versions Environment loading command (via Lmod)
3.0.2
GCC/11.3.0 OpenMPI/4.1.4 PyMOL/3.0.2

PyOpenGL

PyOpenGL is the most common cross platform Python binding to OpenGL and related APIs.

Versions Environment loading command (via Lmod)
3.1.6
GCCcore/11.3.0 PyOpenGL/3.1.6

PyQt5

PyQt5 is a set of Python bindings for v5 of the Qt application framework from The Qt Company. This bundle includes PyQtWebEngine, a set of Python bindings for The Qt Company’s Qt WebEngine framework.

Versions Environment loading command (via Lmod)
5.15.5
GCCcore/11.3.0 PyQt5/5.15.5

PyTorch

Tensors and Dynamic neural networks in Python with strong GPU acceleration. PyTorch is a deep learning framework that puts Python first.

Versions Environment loading command (via Lmod)
1.13.1-CUDA-11.7.0
GCC/11.3.0 OpenMPI/4.1.4 PyTorch/1.13.1-CUDA-11.7.0
1.12.1-CUDA-11.3.1
GCC/10.3.0 OpenMPI/4.1.1 PyTorch/1.12.1-CUDA-11.3.1
1.10.0-CUDA-11.3.1
GCC/10.3.0 OpenMPI/4.1.1 PyTorch/1.10.0-CUDA-11.3.1

PyTorch-Geometric

PyTorch Geometric (PyG) is a geometric deep learning extension library for PyTorch.

Versions Environment loading command (via Lmod)
2.5.1
PyTorch-Geometric/2.5.1
2.1.0-PyTorch-1.12.1-CUDA-11.3.1
GCC/10.3.0 OpenMPI/4.1.1 PyTorch-Geometric/2.1.0-PyTorch-1.12.1-CUDA-11.3.1

PyTorch-Lightning

PyTorch Lightning is the lightweight PyTorch wrapper for ML researchers.

Versions Environment loading command (via Lmod)
1.5.9-CUDA-11.3.1
GCC/10.3.0 OpenMPI/4.1.1 PyTorch-Lightning/1.5.9-CUDA-11.3.1

PyYAML

PyYAML is a YAML parser and emitter for the Python programming language.

Versions Environment loading command (via Lmod)
6.0.2
GCCcore/14.3.0 PyYAML/6.0.2
6.0.2
GCCcore/14.2.0 PyYAML/6.0.2
6.0.1
GCCcore/13.2.0 PyYAML/6.0.1
6.0
GCCcore/12.3.0 PyYAML/6.0
6.0
GCCcore/11.3.0 PyYAML/6.0
5.4.1
GCCcore/10.3.0 PyYAML/5.4.1

PyZMQ

Python bindings for ZeroMQ

Versions Environment loading command (via Lmod)
27.1.0
GCCcore/14.3.0 PyZMQ/27.1.0
25.1.2
GCCcore/13.2.0 PyZMQ/25.1.2
25.1.1
GCCcore/12.3.0 PyZMQ/25.1.1

PycURL

PycURL is a Python interface to libcurl. PycURL can be used to fetch objects identified by a URL from a Python program, similar to the urllib Python module. PycURL is mature, very fast, and supports a lot of features.

Versions Environment loading command (via Lmod)
7.45.3
GCCcore/13.2.0 PycURL/7.45.3
7.45.2
GCCcore/12.3.0 PycURL/7.45.2

Python

Python is a programming language that lets you work more quickly and integrate your systems more effectively.

Versions Environment loading command (via Lmod)
3.13.5
GCCcore/14.3.0 Python/3.13.5
3.13.1
GCCcore/14.2.0 Python/3.13.1
3.12.3
GCCcore/13.3.0 Python/3.12.3
3.11.5
GCCcore/13.2.0 Python/3.11.5
3.11.3
GCCcore/12.3.0 Python/3.11.3
3.10.8-bare
GCCcore/12.2.0 Python/3.10.8-bare
3.10.8
GCCcore/12.2.0 Python/3.10.8
3.10.4-bare
GCCcore/11.3.0 Python/3.10.4-bare
3.10.4
Python/3.10.4
3.10.4
GCCcore/11.3.0 Python/3.10.4
3.9.6-bare
GCCcore/11.2.0 Python/3.9.6-bare
3.9.6
GCCcore/11.2.0 Python/3.9.6
3.9.5-bare
GCCcore/10.3.0 Python/3.9.5-bare
3.9.5
GCCcore/10.3.0 Python/3.9.5
2.7.18-bare
GCCcore/11.3.0 Python/2.7.18-bare
2.7.18
GCCcore/11.2.0 Python/2.7.18

Python-bundle-PyPI

Bundle of Python packages from PyPI

Versions Environment loading command (via Lmod)
2025.07
GCCcore/14.3.0 Python-bundle-PyPI/2025.07
2025.04
GCCcore/14.2.0 Python-bundle-PyPI/2025.04
2023.10
GCCcore/13.2.0 Python-bundle-PyPI/2023.10
2023.06
GCCcore/12.3.0 Python-bundle-PyPI/2023.06

Qhull

Qhull computes the convex hull, Delaunay triangulation, Voronoi diagram, halfspace intersection about a point, furthest-site Delaunay triangulation, and furthest-site Voronoi diagram. The source code runs in 2-d, 3-d, 4-d, and higher dimensions. Qhull implements the Quickhull algorithm for computing the convex hull.

Versions Environment loading command (via Lmod)
2020.2
GCCcore/14.2.0 Qhull/2020.2
2020.2
GCCcore/12.3.0 Qhull/2020.2
2020.2
GCCcore/11.2.0 Qhull/2020.2
2020.2
GCCcore/10.3.0 Qhull/2020.2

Qt5

Qt is a comprehensive cross-platform C++ application framework.

Versions Environment loading command (via Lmod)
5.15.10
GCCcore/12.3.0 Qt5/5.15.10
5.15.5
GCCcore/11.3.0 Qt5/5.15.5

Qt6

Qt is a comprehensive cross-platform C++ application framework.

Versions Environment loading command (via Lmod)
6.6.3
GCCcore/13.2.0 Qt6/6.6.3

QuantumESPRESSO

Quantum ESPRESSO is an integrated suite of computer codes for electronic-structure calculations and materials modeling at the nanoscale. It is based on density-functional theory, plane waves, and pseudopotentials (both norm-conserving and ultrasoft).

Versions Environment loading command (via Lmod)
7.2-nvompic-2022a
NVHPC/22.11-CUDA-11.7.0 OpenMPI/4.1.4 QuantumESPRESSO/7.2-nvompic-2022a
7.1-nvompic-2021b-SMP
NVHPC/22.11-CUDA-11.7.0 OpenMPI/4.1.4 QuantumESPRESSO/7.1-nvompic-2021b-SMP
7.1-nvompic-2021b
NVHPC/22.11-CUDA-11.7.0 OpenMPI/4.1.4 QuantumESPRESSO/7.1-nvompic-2021b

R

R is a free software environment for statistical computing and graphics.

Versions Environment loading command (via Lmod)
4.3.2-gpu
GCC/12.3.0 OpenMPI/4.1.5 R/4.3.2-gpu
4.2.3
GCC/11.3.0 OpenMPI/4.1.4 R/4.2.3

RDFlib

RDFLib is a Python library for working with RDF, a simple yet powerful language for representing information.

Versions Environment loading command (via Lmod)
6.2.0
GCCcore/10.3.0 RDFlib/6.2.0

RE2

RE2 is a fast, safe, thread-friendly alternative to backtracking regular expression engines like those used in PCRE, Perl, and Python. It is a C++ library.

Versions Environment loading command (via Lmod)
2024-07-02
GCCcore/14.2.0 RE2/2024-07-02
2023-08-01
GCCcore/12.3.0 RE2/2023-08-01

RELION

RELION (for REgularised LIkelihood OptimisatioN, pronounce rely-on) is a stand-alone computer program that employs an empirical Bayesian approach to refinement of (multiple) 3D reconstructions or 2D class averages in electron cryo-microscopy (cryo-EM).

Versions Environment loading command (via Lmod)
5.0.0-CUDA-12.4.0
GCC/13.2.0 OpenMPI/4.1.6 RELION/5.0.0-CUDA-12.4.0

RStudio-Server

This is the RStudio Server version. RStudio is a set of integrated tools designed to help you be more productive with R. The server can be started with: rserver --server-daemonize=0 --www-port 8787 --rsession-which-r=$(which R)

Versions Environment loading command (via Lmod)
2024.04.2+764-Java-11-R-4.3.2
GCC/12.3.0 OpenMPI/4.1.5 RStudio-Server/2024.04.2+764-Java-11-R-4.3.2
2022.12.0+353-Java-11-R-4.3.2
GCC/12.3.0 OpenMPI/4.1.5 RStudio-Server/2022.12.0+353-Java-11-R-4.3.2

RapidJSON

A fast JSON parser/generator for C++ with both SAX/DOM style API

Versions Environment loading command (via Lmod)
1.1.0-20240815
GCCcore/14.2.0 RapidJSON/1.1.0-20240815
1.1.0-20230928
GCCcore/12.3.0 RapidJSON/1.1.0-20230928

Redis

Redis is an open source (BSD licensed), in-memory data structure store, used as a database, cache, and message broker. Redis provides data structures such as strings, hashes, lists, sets, sorted sets with range queries, bitmaps, hyperloglogs, geospatial indexes, and streams. Redis has built-in replication, Lua scripting, LRU eviction, transactions, and different levels of on-disk persistence, and provides high availability via Redis Sentinel and automatic partitioning with Redis Cluster.

Versions Environment loading command (via Lmod)
7.0.8
Redis/7.0.8

Ruby

Ruby is a dynamic, open source programming language with a focus on simplicity and productivity. It has an elegant syntax that is natural to read and easy to write.

Versions Environment loading command (via Lmod)
2.7.7
Ruby/2.7.7

Rust

Rust is a systems programming language that runs blazingly fast, prevents segfaults, and guarantees thread safety.

Versions Environment loading command (via Lmod)
1.88.0
GCCcore/14.3.0 Rust/1.88.0
1.85.1
GCCcore/14.2.0 Rust/1.85.1
1.73.0
GCCcore/13.2.0 Rust/1.73.0
1.70.0
GCCcore/12.3.0 Rust/1.70.0
1.65.0
GCCcore/12.2.0 Rust/1.65.0
1.65.0
GCCcore/11.2.0 Rust/1.65.0
1.60.0
Rust/1.60.0
1.60.0
GCCcore/11.3.0 Rust/1.60.0
1.54.0
GCCcore/11.2.0 Rust/1.54.0
1.52.1
GCCcore/10.3.0 Rust/1.52.1

SCOTCH

Software package and libraries for sequential and parallel graph partitioning, static mapping, and sparse matrix block ordering, and sequential mesh and hypergraph partitioning.

Versions Environment loading command (via Lmod)
7.0.3
GCC/12.3.0 OpenMPI/4.1.5 SCOTCH/7.0.3
7.0.1
GCC/11.3.0 OpenMPI/4.1.4 SCOTCH/7.0.1

SDL2

SDL: Simple DirectMedia Layer, a cross-platform multimedia library

Versions Environment loading command (via Lmod)
2.28.5
GCCcore/13.2.0 SDL2/2.28.5
2.28.2
GCCcore/12.3.0 SDL2/2.28.2
2.0.22
GCCcore/11.3.0 SDL2/2.0.22
2.0.20
GCCcore/11.2.0 SDL2/2.0.20

SIRIUS

SIRIUS is a domain specific library for electronic structure calculations. It implements pseudopotential plane wave (PP-PW) and full potential linearized augmented plane wave (FP-LAPW) methods and is designed for GPU acceleration of popular community codes such as Exciting, Elk and Quantum ESPRESSO.

Versions Environment loading command (via Lmod)
7.5.2-CUDA-11.7.0
GCC/11.3.0 OpenMPI/4.1.4 SIRIUS/7.5.2-CUDA-11.7.0

SOCI

SOCI is a database access library for C++ that makes the illusion of embedding SQL queries in the regular C++ code, staying entirely within the Standard C++.

Versions Environment loading command (via Lmod)
4.0.3
GCC/12.3.0 SOCI/4.0.3

SPLA

SPLA provides functions for distributed matrix multiplications with specific matrix distributions, which cannot be used directly with a ScaLAPACK interface. All computations can optionally utilize GPUs through CUDA or ROCm, where matrices can be located either in host or device memory.

Versions Environment loading command (via Lmod)
1.5.5-CUDA-11.7.0
GCC/11.3.0 OpenMPI/4.1.4 SPLA/1.5.5-CUDA-11.7.0

SQLAlchemy

SQLAlchemy is the Python SQL toolkit and Object Relational Mapper that gives application developers the full power and flexibility of SQL. SQLAlchemy provides a full suite of well known enterprise-level persistence patterns, designed for efficient and high-performing database access, adapted into a simple and Pythonic domain language.

Versions Environment loading command (via Lmod)
2.0.29
GCCcore/13.2.0 SQLAlchemy/2.0.29

SQLite

SQLite: SQL Database Engine in a C Library

Versions Environment loading command (via Lmod)
3.50.1
GCCcore/14.3.0 SQLite/3.50.1
3.47.2
GCCcore/14.2.0 SQLite/3.47.2
3.45.3
GCCcore/13.3.0 SQLite/3.45.3
3.43.1
GCCcore/13.2.0 SQLite/3.43.1
3.42.0
GCCcore/12.3.0 SQLite/3.42.0
3.39.4
GCCcore/12.2.0 SQLite/3.39.4
3.38.3
SQLite/3.38.3
3.38.3
GCCcore/11.3.0 SQLite/3.38.3
3.36
GCCcore/11.2.0 SQLite/3.36
3.35.4
GCCcore/10.3.0 SQLite/3.35.4

SWIG

SWIG is a software development tool that connects programs written in C and C++ with a variety of high-level programming languages.

Versions Environment loading command (via Lmod)
4.3.1
GCCcore/14.2.0 SWIG/4.3.1
4.1.1
GCCcore/12.3.0 SWIG/4.1.1
4.0.2
GCCcore/11.2.0 SWIG/4.0.2

ScaLAPACK

The ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines redesigned for distributed memory MIMD parallel computers.

Versions Environment loading command (via Lmod)
2.2.2-fb
GCC/14.2.0 OpenMPI/5.0.7 ScaLAPACK/2.2.2-fb
2.2.0-fb
NVHPC/24.5-CUDA-12.4.0 OpenMPI/4.1.6 ScaLAPACK/2.2.0-fb
2.2.0-fb
GCC/13.2.0 OpenMPI/4.1.6 ScaLAPACK/2.2.0-fb
2.2.0-fb
GCC/12.3.0 OpenMPI/4.1.5 ScaLAPACK/2.2.0-fb
2.2.0-fb
GCC/12.2.0 OpenMPI/4.1.4 ScaLAPACK/2.2.0-fb
2.2.0-fb
GCC/11.3.0 OpenMPI/4.1.4 ScaLAPACK/2.2.0-fb
2.2.0
NVHPC/23.1-CUDA-12.0.0 OpenMPI/4.1.4 ScaLAPACK/2.2.0
2.1.0-fb
GCC/11.2.0 OpenMPI/4.1.2 ScaLAPACK/2.1.0-fb
2.1.0-fb
GCC/10.3.0 OpenMPI/4.1.1 ScaLAPACK/2.1.0-fb

SciPy-bundle

Bundle of Python packages for scientific software

Versions Environment loading command (via Lmod)
2025.06
GCC/14.2.0 SciPy-bundle/2025.06
2023.07
GCC/12.3.0 SciPy-bundle/2023.07
2023.02
GCC/12.2.0 SciPy-bundle/2023.02
2022.05
GCC/11.3.0 OpenMPI/4.1.4 SciPy-bundle/2022.05
2021.10
GCC/11.2.0 OpenMPI/4.1.2 SciPy-bundle/2021.10
2021.05
GCC/10.3.0 OpenMPI/4.1.1 SciPy-bundle/2021.05

Seaborn

Seaborn is a Python visualization library based on matplotlib. It provides a high-level interface for drawing attractive statistical graphics.

Versions Environment loading command (via Lmod)
0.13.2
GCC/12.3.0 Seaborn/0.13.2

Siesta

SIESTA is both a method and its computer program implementation, to perform efficient electronic structure calculations and ab initio molecular dynamics simulations of molecules and solids.

Versions Environment loading command (via Lmod)
4.1.5-CUDA-11.7.0
GCC/11.3.0 OpenMPI/4.1.4 Siesta/4.1.5-CUDA-11.7.0

SoX

SoX is the Swiss Army Knife of sound processing utilities. It can convert audio files to other popular audio file types and also apply sound effects and filters during the conversion.

Versions Environment loading command (via Lmod)
14.4.2
GCC/12.3.0 SoX/14.4.2
14.4.2
GCC/10.3.0 SoX/14.4.2

SpFFT

SpFFT - A 3D FFT library for sparse frequency domain data written in C++ with support for MPI, OpenMP, CUDA and ROCm.

Versions Environment loading command (via Lmod)
1.0.6-CUDA-11.7.0
GCC/11.3.0 OpenMPI/4.1.4 SpFFT/1.0.6-CUDA-11.7.0

SuiteSparse

SuiteSparse is a collection of libraries to manipulate sparse matrices.

Versions Environment loading command (via Lmod)
7.1.0
GCC/12.3.0 OpenMPI/4.1.5 SuiteSparse/7.1.0
5.13.0-METIS-5.1.0
GCC/11.3.0 OpenMPI/4.1.4 SuiteSparse/5.13.0-METIS-5.1.0

SuperLU

SuperLU is a general purpose library for the direct solution of large, sparse, nonsymmetric systems of linear equations on high performance machines.

Versions Environment loading command (via Lmod)
5.3.0
GCC/11.3.0 OpenMPI/4.1.4 SuperLU/5.3.0

SuperLU_DIST

SuperLU is a general purpose library for the direct solution of large, sparse, nonsymmetric systems of linear equations on high performance machines.

Versions Environment loading command (via Lmod)
8.1.2
GCC/12.3.0 OpenMPI/4.1.5 SuperLU_DIST/8.1.2

Szip

Szip compression software, providing lossless compression of scientific data

Versions Environment loading command (via Lmod)
2.1.1
GCCcore/13.2.0 Szip/2.1.1
2.1.1
GCCcore/12.3.0 Szip/2.1.1
2.1.1
GCCcore/11.3.0 Szip/2.1.1
2.1.1
GCCcore/11.2.0 Szip/2.1.1
2.1.1
GCCcore/10.3.0 Szip/2.1.1

Tcl

Tcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, suitable for a very wide range of uses, including web and desktop applications, networking, administration, testing and many more.

Versions Environment loading command (via Lmod)
9.0.1
GCCcore/14.3.0 Tcl/9.0.1
8.6.16
GCCcore/14.2.0 Tcl/8.6.16
8.6.14
GCCcore/13.3.0 Tcl/8.6.14
8.6.13
GCCcore/13.2.0 Tcl/8.6.13
8.6.13
GCCcore/12.3.0 Tcl/8.6.13
8.6.12
Tcl/8.6.12
8.6.12
GCCcore/12.2.0 Tcl/8.6.12
8.6.12
GCCcore/11.3.0 Tcl/8.6.12
8.6.11
GCCcore/11.2.0 Tcl/8.6.11
8.6.11
GCCcore/10.3.0 Tcl/8.6.11

TensorFlow

An open-source software library for Machine Intelligence

Versions Environment loading command (via Lmod)
2.11.0-CUDA-11.7.0
GCC/11.3.0 OpenMPI/4.1.4 TensorFlow/2.11.0-CUDA-11.7.0
2.5.3-CUDA-11.3.1
GCC/10.3.0 OpenMPI/4.1.1 TensorFlow/2.5.3-CUDA-11.3.1

TeraChem

TeraChem is general purpose quantum chemistry software designed to run on NVIDIA GPU architectures under a 64-bit Linux operating system.

Versions Environment loading command (via Lmod)
1.95
TeraChem/1.95

Tk

Tk is an open source, cross-platform widget toolchain that provides a library of basic elements for building a graphical user interface (GUI) in many different programming languages.

Versions Environment loading command (via Lmod)
8.6.16
GCCcore/14.2.0 Tk/8.6.16
8.6.13
GCCcore/12.3.0 Tk/8.6.13
8.6.12
GCCcore/11.3.0 Tk/8.6.12
8.6.11
GCCcore/11.2.0 Tk/8.6.11
8.6.11
GCCcore/10.3.0 Tk/8.6.11

Tkinter

Tkinter module, built with the Python buildsystem

Versions Environment loading command (via Lmod)
3.13.1
GCCcore/14.2.0 Tkinter/3.13.1
3.11.3
GCCcore/12.3.0 Tkinter/3.11.3
3.10.4
GCCcore/11.3.0 Tkinter/3.10.4
3.9.6
GCCcore/11.2.0 Tkinter/3.9.6
3.9.5
GCCcore/10.3.0 Tkinter/3.9.5

TurboVNC

TurboVNC is a derivative of VNC (Virtual Network Computing) that is tuned to provide peak performance for 3D and video workloads.

Versions Environment loading command (via Lmod)
3.2
GCCcore/13.2.0 TurboVNC/3.2
3.0.1
TurboVNC/3.0.1

UCC

UCC (Unified Collective Communication) is a collective communication operations API and library that is flexible, complete, and feature-rich for current and emerging programming models and runtimes.

Versions Environment loading command (via Lmod)
1.3.0
GCCcore/14.2.0 UCC/1.3.0
1.2.0
GCCcore/13.2.0 UCC/1.2.0
1.2.0
GCCcore/12.3.0 UCC/1.2.0
1.1.0
GCCcore/12.2.0 UCC/1.1.0
1.0.0
GCCcore/11.3.0 UCC/1.0.0

UCC-CUDA

UCC (Unified Collective Communication) is a collective communication operations API and library that is flexible, complete, and feature-rich for current and emerging programming models and runtimes. This module adds the UCC CUDA support.

Versions Environment loading command (via Lmod)
1.2.0-CUDA-12.4.0
GCCcore/13.2.0 UCC-CUDA/1.2.0-CUDA-12.4.0
1.2.0-CUDA-12.1.1
GCCcore/12.3.0 UCC-CUDA/1.2.0-CUDA-12.1.1
1.1.0-CUDA-12.0.0
GCCcore/12.2.0 UCC-CUDA/1.1.0-CUDA-12.0.0
1.0.0-CUDA-11.7.0
GCCcore/11.3.0 UCC-CUDA/1.0.0-CUDA-11.7.0

UCX

Unified Communication X An open-source production grade communication framework for data centric and high-performance applications

Versions Environment loading command (via Lmod)
1.18.0
GCCcore/14.2.0 UCX/1.18.0
1.16.0
GCCcore/13.2.0 UCX/1.16.0
1.15.0
GCCcore/13.2.0 UCX/1.15.0
1.14.1
GCCcore/12.3.0 UCX/1.14.1
1.13.1
GCCcore/12.2.0 UCX/1.13.1
1.13.0
GCCcore/11.3.0 UCX/1.13.0
1.12.1
GCCcore/11.3.0 UCX/1.12.1
1.12.1
GCCcore/11.2.0 UCX/1.12.1
1.12.1
GCCcore/10.3.0 UCX/1.12.1
1.11.2
GCCcore/11.2.0 UCX/1.11.2
1.10.0
GCCcore/10.3.0 UCX/1.10.0

UCX-CUDA

Unified Communication X An open-source production grade communication framework for data centric and high-performance applications This module adds the UCX CUDA support.

Versions Environment loading command (via Lmod)
1.18.0-CUDA-12.8.0
GCCcore/14.2.0 UCX-CUDA/1.18.0-CUDA-12.8.0
1.16.0-CUDA-12.4.0
GCCcore/13.2.0 UCX-CUDA/1.16.0-CUDA-12.4.0
1.15.0-CUDA-12.4.0
GCCcore/13.2.0 UCX-CUDA/1.15.0-CUDA-12.4.0
1.14.1-CUDA-12.1.1
GCCcore/12.3.0 UCX-CUDA/1.14.1-CUDA-12.1.1
1.13.1-CUDA-12.0.0
GCCcore/12.2.0 UCX-CUDA/1.13.1-CUDA-12.0.0
1.13.0-CUDA-11.7.0
GCCcore/11.3.0 UCX-CUDA/1.13.0-CUDA-11.7.0
1.12.1-CUDA-11.7.0
GCCcore/11.3.0 UCX-CUDA/1.12.1-CUDA-11.7.0
1.12.1-CUDA-11.6.0
GCCcore/11.2.0 UCX-CUDA/1.12.1-CUDA-11.6.0
1.12.1-CUDA-11.4.1
GCCcore/11.2.0 UCX-CUDA/1.12.1-CUDA-11.4.1
1.12.1-CUDA-11.3.1
GCCcore/10.3.0 UCX-CUDA/1.12.1-CUDA-11.3.1
1.11.2-CUDA-11.4.1
GCCcore/11.2.0 UCX-CUDA/1.11.2-CUDA-11.4.1
1.10.0-CUDA-11.3.1
GCCcore/10.3.0 UCX-CUDA/1.10.0-CUDA-11.3.1

UDUNITS

UDUNITS supports conversion of unit specifications between formatted and binary forms, arithmetic manipulation of units, and conversion of values between compatible scales of measurement.

Versions Environment loading command (via Lmod)
2.2.28
GCCcore/11.3.0 UDUNITS/2.2.28

Umpire

Umpire is a resource management library that allows the discovery, provision, and management of memory on machines with multiple memory devices like NUMA and GPUs.

Versions Environment loading command (via Lmod)
2024.02.1-CUDA-12.1.1
GCC/12.3.0 OpenMPI/4.1.5 Umpire/2024.02.1-CUDA-12.1.1

UnZip

UnZip is an extraction utility for archives compressed in .zip format (also called "zipfiles

Versions Environment loading command (via Lmod)
6.0
UnZip/6.0
6.0
GCCcore/14.3.0 UnZip/6.0
6.0
GCCcore/14.2.0 UnZip/6.0
6.0
GCCcore/13.3.0 UnZip/6.0
6.0
GCCcore/13.2.0 UnZip/6.0
6.0
GCCcore/12.3.0 UnZip/6.0
6.0
GCCcore/12.2.0 UnZip/6.0
6.0
GCCcore/11.3.0 UnZip/6.0
6.0
GCCcore/11.2.0 UnZip/6.0
6.0
GCCcore/10.3.0 UnZip/6.0

VASP

The Vienna Ab initio Simulation Package (VASP) is a computer program for atomic scale materials modelling, e.g. electronic structure calculations and quantum-mechanical molecular dynamics, from first principles.

Versions Environment loading command (via Lmod)
6.4.3
NVHPC/22.11-CUDA-11.7.0 OpenMPI/4.1.4 VASP/6.4.3
6.3.2
NVHPC/22.11-CUDA-11.7.0 OpenMPI/4.1.4 VASP/6.3.2
6.3.0
NVHPC/22.7 OpenMPI/4.1.2 VASP/6.3.0

VMD

VMD is a molecular visualization program for displaying, animating, and analyzing large biomolecular systems using 3-D graphics and built-in scripting.

Versions Environment loading command (via Lmod)
1.9.4a57
GCC/11.3.0 OpenMPI/4.1.4 VMD/1.9.4a57

VSCode

Visual Studio Code is a lightweight but powerful source code editor which runs on your desktop and is available for Windows, macOS and Linux. It comes with built-in support for JavaScript, TypeScript and Node.js and has a rich ecosystem of extensions for other languages and runtimes (such as C++, C#, Java, Python, PHP, Go, .NET). Begin your journey with VS Code with these introductory videos.

Versions Environment loading command (via Lmod)
1.100.1
VSCode/1.100.1
1.92
VSCode/1.92
1.85.0
VSCode/1.85.0

VirtualGL

VirtualGL is an open source toolkit that gives any Linux or Unix remote display software the ability to run OpenGL applications with full hardware acceleration.

Versions Environment loading command (via Lmod)
3.1.3
GCC/13.2.0 VirtualGL/3.1.3
3.1.1
GCC/13.2.0 VirtualGL/3.1.1

Wannier90

A tool for obtaining maximally-localised Wannier functions

Versions Environment loading command (via Lmod)
3.1.0
NVHPC/24.5-CUDA-12.4.0 OpenMPI/4.1.6 Wannier90/3.1.0
3.1.0
intel-compilers/2022.1.0 impi/2021.6.0 Wannier90/3.1.0

Wayland

Wayland is a project to define a protocol for a compositor to talk to its clients as well as a library implementation of the protocol. The compositor can be a standalone display server running on Linux kernel modesetting and evdev input devices, an X application, or a wayland client itself. The clients can be traditional applications, X servers (rootless or fullscreen) or other display servers.

Versions Environment loading command (via Lmod)
1.22.0
GCCcore/13.2.0 Wayland/1.22.0
1.20.0
GCCcore/11.3.0 Wayland/1.20.0

X11

The X Window System (X11) is a windowing system for bitmap displays

Versions Environment loading command (via Lmod)
20250521
GCCcore/14.2.0 X11/20250521
20240607
GCCcore/13.3.0 X11/20240607
20231019
GCCcore/13.2.0 X11/20231019
20230603
GCCcore/12.3.0 X11/20230603
20220504
X11/20220504
20220504
GCCcore/11.3.0 X11/20220504
20210802
GCCcore/11.2.0 X11/20210802
20210518
GCCcore/10.3.0 X11/20210518

XGBoost

XGBoost is an optimized distributed gradient boosting library designed to be highly efficient, flexible and portable.

Versions Environment loading command (via Lmod)
2.0.2
GCC/12.3.0 XGBoost/2.0.2

XZ

xz: XZ utilities

Versions Environment loading command (via Lmod)
5.8.1
GCCcore/14.3.0 XZ/5.8.1
5.6.3
GCCcore/14.2.0 XZ/5.6.3
5.4.5
GCCcore/13.3.0 XZ/5.4.5
5.4.4
GCCcore/13.2.0 XZ/5.4.4
5.4.2
GCCcore/12.3.0 XZ/5.4.2
5.2.7
XZ/5.2.7
5.2.7
GCCcore/12.2.0 XZ/5.2.7
5.2.7
GCCcore/10.3.0 XZ/5.2.7
5.2.5
XZ/5.2.5
5.2.5
GCCcore/11.3.0 XZ/5.2.5
5.2.5
GCCcore/11.2.0 XZ/5.2.5
5.2.5
GCCcore/10.3.0 XZ/5.2.5

Xerces-C++

Xerces-C++ is a validating XML parser written in a portable subset of C++. Xerces-C++ makes it easy to give your application the ability to read and write XML data. A shared library is provided for parsing, generating, manipulating, and validating XML documents using the DOM, SAX, and SAX2 APIs.

Versions Environment loading command (via Lmod)
3.2.4
GCCcore/12.3.0 Xerces-C++/3.2.4

Xvfb

Xvfb is an X server that can run on machines with no display hardware and no physical input devices. It emulates a dumb framebuffer using virtual memory.

Versions Environment loading command (via Lmod)
21.1.3
GCCcore/11.3.0 Xvfb/21.1.3

YACS

YACS was created as a lightweight library to define and manage system configurations, such as those commonly found in software designed for scientific experimentation. These "configurations" typically cover concepts like hyperparameters used in training a machine learning model or configurable model hyperparameters, such as the depth of a convolutional neural network.

Versions Environment loading command (via Lmod)
0.1.8
GCCcore/10.3.0 YACS/0.1.8

Yambo

Yambo is a FORTRAN/C code for Many-Body calculations in solid state and molecular physics. Yambo relies on the Kohn-Sham wavefunctions generated by two DFT public codes: abinit, and PWscf.

Versions Environment loading command (via Lmod)
5.2.1
NVHPC/23.1-CUDA-12.0.0 OpenMPI/4.1.4 Yambo/5.2.1
5.2.0-no-time-profile
NVHPC/22.11-CUDA-11.7.0 Yambo/5.2.0-no-time-profile
5.1.1-991f327-no-time-profile
NVHPC/22.11-CUDA-11.7.0 Yambo/5.1.1-991f327-no-time-profile
5.1.1-991f327
NVHPC/22.11-CUDA-11.7.0 Yambo/5.1.1-991f327

Yasm

Yasm: Complete rewrite of the NASM assembler with BSD license

Versions Environment loading command (via Lmod)
1.3.0
GCCcore/13.2.0 Yasm/1.3.0
1.3.0
GCCcore/12.3.0 Yasm/1.3.0
1.3.0
GCCcore/11.3.0 Yasm/1.3.0
1.3.0
GCCcore/10.3.0 Yasm/1.3.0

Z3

Z3 is a theorem prover from Microsoft Research with support for bitvectors, booleans, arrays, floating point numbers, strings, and other data types. This module includes z3-solver, the Python interface of Z3.

Versions Environment loading command (via Lmod)
4.13.0
GCCcore/13.2.0 Z3/4.13.0
4.12.2
GCCcore/12.3.0 Z3/4.12.2
4.10.2
Z3/4.10.2
4.10.2
GCCcore/11.3.0 Z3/4.10.2
4.8.12
GCCcore/11.2.0 Z3/4.8.12

ZeroMQ

ZeroMQ looks like an embeddable networking library but acts like a concurrency framework. It gives you sockets that carry atomic messages across various transports like in-process, inter-process, TCP, and multicast. You can connect sockets N-to-N with patterns like fanout, pub-sub, task distribution, and request-reply. It's fast enough to be the fabric for clustered products. Its asynchronous I/O model gives you scalable multicore applications, built as asynchronous message-processing tasks. It has a score of language APIs and runs on most operating systems.

Versions Environment loading command (via Lmod)
4.3.5
GCCcore/14.3.0 ZeroMQ/4.3.5
4.3.5
GCCcore/13.2.0 ZeroMQ/4.3.5
4.3.4
GCCcore/12.3.0 ZeroMQ/4.3.4
4.3.4
GCCcore/11.3.0 ZeroMQ/4.3.4
4.3.4
GCCcore/10.3.0 ZeroMQ/4.3.4

Zip

Zip is a compression and file packaging/archive utility. Although highly compatible both with PKWARE's PKZIP and PKUNZIP utilities for MS-DOS and with Info-ZIP's own UnZip, our primary objectives have been portability and other-than-MSDOS functionality

Versions Environment loading command (via Lmod)
3.0
GCCcore/12.3.0 Zip/3.0
3.0
GCCcore/11.3.0 Zip/3.0
3.0
GCCcore/11.2.0 Zip/3.0
3.0
GCCcore/10.3.0 Zip/3.0

aiohttp

Asynchronous HTTP client/server framework for asyncio and Python.

Versions Environment loading command (via Lmod)
3.12.15
GCCcore/14.3.0 aiohttp/3.12.15
3.9.5
GCCcore/13.2.0 aiohttp/3.9.5
3.8.5
GCCcore/12.3.0 aiohttp/3.8.5

alsa-lib

The Advanced Linux Sound Architecture (ALSA) provides audio and MIDI functionality to the Linux operating system.

Versions Environment loading command (via Lmod)
1.2.8
GCCcore/11.3.0 alsa-lib/1.2.8

angsd

Program for analysing NGS data.

Versions Environment loading command (via Lmod)
0.940
GCC/11.2.0 angsd/0.940

ant

Apache Ant is a Java library and command-line tool whose mission is to drive processes described in build files as targets and extension points dependent upon each other. The main known usage of Ant is the build of Java applications.

Versions Environment loading command (via Lmod)
1.10.12-Java-11
ant/1.10.12-Java-11
1.10.11-Java-11
ant/1.10.11-Java-11
1.10.9-Java-11
ant/1.10.9-Java-11

archspec

A library for detecting, labeling, and reasoning about microarchitectures

Versions Environment loading command (via Lmod)
0.1.3
GCCcore/11.2.0 archspec/0.1.3

aria2

aria2 is a lightweight multi-protocol & multi-source command-line download utility.

Versions Environment loading command (via Lmod)
1.36.0
GCCcore/11.3.0 aria2/1.36.0

arpack-ng

ARPACK is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems.

Versions Environment loading command (via Lmod)
3.9.0
GCC/12.3.0 OpenMPI/4.1.5 arpack-ng/3.9.0

assimp

Open Asset Import Library (assimp) is a library to import and export various 3d-model-formats including scene-post-processing to generate missing render data.

Versions Environment loading command (via Lmod)
5.3.1
GCCcore/13.2.0 assimp/5.3.1

asyncssh

AsyncSSH is a Python package which provides an asynchronous client and server implementation of the SSHv2 protocol on top of the Python 3.6+ asyncio framework.

Versions Environment loading command (via Lmod)
2.21.1
GCCcore/14.3.0 asyncssh/2.21.1
2.14.2
GCCcore/13.2.0 asyncssh/2.14.2
2.14.2
GCCcore/12.3.0 asyncssh/2.14.2

at-spi2-atk

AT-SPI 2 toolkit bridge

Versions Environment loading command (via Lmod)
2.38.0
GCCcore/13.2.0 at-spi2-atk/2.38.0
2.38.0
GCCcore/11.3.0 at-spi2-atk/2.38.0
2.38.0
GCCcore/10.3.0 at-spi2-atk/2.38.0

at-spi2-core

Assistive Technology Service Provider Interface.

Versions Environment loading command (via Lmod)
2.50.0
GCCcore/13.2.0 at-spi2-core/2.50.0
2.44.1
GCCcore/11.3.0 at-spi2-core/2.44.1
2.40.2
GCCcore/10.3.0 at-spi2-core/2.40.2

bcrypt

Acceptable password hashing for your software and your servers (but you should really use argon2id or scrypt)

Versions Environment loading command (via Lmod)
4.1.3
GCCcore/13.2.0 bcrypt/4.1.3

binutils

binutils: GNU binary utilities

Versions Environment loading command (via Lmod)
2.44
GCCcore/14.3.0 binutils/2.44
2.44
binutils/2.44
2.42
GCCcore/14.2.0 binutils/2.42
2.42
GCCcore/13.3.0 binutils/2.42
2.42
binutils/2.42
2.40
GCCcore/13.2.0 binutils/2.40
2.40
GCCcore/12.3.0 binutils/2.40
2.40
binutils/2.40
2.39
GCCcore/12.2.0 binutils/2.39
2.39
binutils/2.39
2.38
GCCcore/11.3.0 binutils/2.38
2.38
binutils/2.38
2.37
GCCcore/11.2.0 binutils/2.37
2.37
binutils/2.37
2.36.1
GCCcore/10.3.0 binutils/2.36.1
2.36.1
binutils/2.36.1
2.35
binutils/2.35

bio-embeddings

Bio Embeddings.

Versions Environment loading command (via Lmod)
0.2.3
GCC/10.3.0 bio-embeddings/0.2.3
0.2.2
bio-embeddings/0.2.2

bokeh

Statistical and novel interactive HTML plots for Python

Versions Environment loading command (via Lmod)
3.7.3
GCC/14.2.0 bokeh/3.7.3
2.4.1
GCC/10.3.0 OpenMPI/4.1.1 bokeh/2.4.1

bzip2

bzip2 is a freely available, patent free, high-quality data compressor. It typically compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical compressors), whilst being around twice as fast at compression and six times faster at decompression.

Versions Environment loading command (via Lmod)
1.0.8
GCCcore/14.3.0 bzip2/1.0.8
1.0.8
GCCcore/14.2.0 bzip2/1.0.8
1.0.8
GCCcore/13.3.0 bzip2/1.0.8
1.0.8
GCCcore/13.2.0 bzip2/1.0.8
1.0.8
GCCcore/12.3.0 bzip2/1.0.8
1.0.8
GCCcore/12.2.0 bzip2/1.0.8
1.0.8
GCCcore/11.3.0 bzip2/1.0.8
1.0.8
GCCcore/11.2.0 bzip2/1.0.8
1.0.8
GCCcore/10.3.0 bzip2/1.0.8
1.0.8
bzip2/1.0.8

c-ares

c-ares is a C library for asynchronous DNS requests (including name resolves)

Versions Environment loading command (via Lmod)
1.18.1
GCCcore/11.3.0 c-ares/1.18.1

cURL

libcurl is a free and easy-to-use client-side URL transfer library, supporting DICT, FILE, FTP, FTPS, Gopher, HTTP, HTTPS, IMAP, IMAPS, LDAP, LDAPS, POP3, POP3S, RTMP, RTSP, SCP, SFTP, SMTP, SMTPS, Telnet and TFTP. libcurl supports SSL certificates, HTTP POST, HTTP PUT, FTP uploading, HTTP form based upload, proxies, cookies, user+password authentication (Basic, Digest, NTLM, Negotiate, Kerberos), file transfer resume, http proxy tunneling and more.

Versions Environment loading command (via Lmod)
8.14.1
GCCcore/14.3.0 cURL/8.14.1
8.11.1
GCCcore/14.2.0 cURL/8.11.1
8.7.1
GCCcore/13.3.0 cURL/8.7.1
8.3.0
GCCcore/13.2.0 cURL/8.3.0
8.0.1
GCCcore/12.3.0 cURL/8.0.1
7.86.0
GCCcore/12.2.0 cURL/7.86.0
7.83.0
GCCcore/11.3.0 cURL/7.83.0
7.83.0
cURL/7.83.0
7.78.0
GCCcore/11.2.0 cURL/7.78.0
7.76.0
GCCcore/10.3.0 cURL/7.76.0

cairo

Cairo is a 2D graphics library with support for multiple output devices. Currently supported output targets include the X Window System (via both Xlib and XCB), Quartz, Win32, image buffers, PostScript, PDF, and SVG file output. Experimental backends include OpenGL, BeOS, OS/2, and DirectFB

Versions Environment loading command (via Lmod)
1.18.0
GCCcore/13.3.0 cairo/1.18.0
1.18.0
GCCcore/13.2.0 cairo/1.18.0
1.17.8
GCCcore/12.3.0 cairo/1.17.8
1.17.4
GCCcore/11.3.0 cairo/1.17.4
1.16.0
GCCcore/11.2.0 cairo/1.16.0
1.16.0
GCCcore/10.3.0 cairo/1.16.0

camp

CAMP Concepts And Meta-Programming library

Versions Environment loading command (via Lmod)
2024.02.0-CUDA-11.7.0
GCC/11.3.0 OpenMPI/4.1.4 camp/2024.02.0-CUDA-11.7.0

ccache

Ccache (or “ccache”) is a compiler cache. It speeds up recompilation by caching previous compilations and detecting when the same compilation is being done again

Versions Environment loading command (via Lmod)
4.9
GCCcore/13.2.0 ccache/4.9

cffi

C Foreign Function Interface for Python. Interact with almost any C code from Python, based on C-like declarations that you can often copy-paste from header files or documentation.

Versions Environment loading command (via Lmod)
1.17.1
GCCcore/14.3.0 cffi/1.17.1
1.17.1
GCCcore/14.2.0 cffi/1.17.1
1.15.1
GCCcore/13.2.0 cffi/1.15.1
1.15.1
GCCcore/12.3.0 cffi/1.15.1

chroma

Chroma software

Versions Environment loading command (via Lmod)
9e78369-CUDA-12.4.0
GCC/13.2.0 OpenMPI/4.1.6 chroma/9e78369-CUDA-12.4.0

configurable-http-proxy

HTTP proxy for node.js including a REST API for updating the routing table. Developed as a part of the Jupyter Hub multi-user server.

Versions Environment loading command (via Lmod)
4.6.1
GCCcore/13.2.0 configurable-http-proxy/4.6.1
4.5.6
GCCcore/12.3.0 configurable-http-proxy/4.5.6
4.5.4
GCCcore/11.3.0 configurable-http-proxy/4.5.4

cppy

A small C++ header library which makes it easier to write Python extension modules. The primary feature is a PyObject smart pointer which automatically handles reference counting and provides convenience methods for performing common object operations.

Versions Environment loading command (via Lmod)
1.3.1
GCCcore/14.2.0 cppy/1.3.1
1.2.1
GCCcore/12.3.0 cppy/1.2.1
1.1.0
GCCcore/11.2.0 cppy/1.1.0
1.1.0
GCCcore/10.3.0 cppy/1.1.0

cramjam

Your go-to for easy access to a plethora of compression algorithms, all neatly bundled in one simple installation.

Versions Environment loading command (via Lmod)
2.9.0
GCCcore/14.2.0 cramjam/2.9.0

cryoSPARC

CryoSPARC is a state of the art scientific software platform for cryo-electron microscopy (cryo-EM) used in research and drug discovery pipelines.

Versions Environment loading command (via Lmod)
default
cryoSPARC/default
4.7.0
cryoSPARC/4.7.0
4.6.2
cryoSPARC/4.6.2
4.5.3-240807
cryoSPARC/4.5.3-240807
4.5.1
cryoSPARC/4.5.1
4.4.1-240110
cryoSPARC/4.4.1-240110
4.4.0-231114
cryoSPARC/4.4.0-231114
4.3.0
cryoSPARC/4.3.0
4.2.1-230621
cryoSPARC/4.2.1-230621
4.2.1-230403
cryoSPARC/4.2.1-230403
4.2.0-230302
cryoSPARC/4.2.0-230302

cryptography

cryptography is a package designed to expose cryptographic primitives and recipes to Python developers.

Versions Environment loading command (via Lmod)
45.0.5
GCCcore/14.3.0 cryptography/45.0.5
44.0.2
GCCcore/14.2.0 cryptography/44.0.2
41.0.5
GCCcore/13.2.0 cryptography/41.0.5
41.0.1
GCCcore/12.3.0 cryptography/41.0.1

cuDNN

The NVIDIA CUDA Deep Neural Network library (cuDNN) is a GPU-accelerated library of primitives for deep neural networks.

Versions Environment loading command (via Lmod)
9.2.1.18-CUDA-12.4.0
cuDNN/9.2.1.18-CUDA-12.4.0
8.9.7.29-CUDA-12.3.0
cuDNN/8.9.7.29-CUDA-12.3.0
8.9.2.26-CUDA-12.2.0
cuDNN/8.9.2.26-CUDA-12.2.0
8.9.2.26-CUDA-12.1.1
cuDNN/8.9.2.26-CUDA-12.1.1
8.8.0.121-CUDA-12.0.0
cuDNN/8.8.0.121-CUDA-12.0.0
8.6.0.163-CUDA-11.8.0
cuDNN/8.6.0.163-CUDA-11.8.0
8.4.1.50-CUDA-11.7.0
cuDNN/8.4.1.50-CUDA-11.7.0
8.4.1.50-CUDA-11.6.0
cuDNN/8.4.1.50-CUDA-11.6.0
8.2.2.26-CUDA-11.4.1
cuDNN/8.2.2.26-CUDA-11.4.1
8.2.1.32-CUDA-11.3.1
cuDNN/8.2.1.32-CUDA-11.3.1

cuSPARSELt

NVIDIA cuSPARSELt is a high-performance CUDA library dedicated to general matrix-matrix operations in which at least one operand is a sparse matrix

Versions Environment loading command (via Lmod)
0.6.2.3-CUDA-12.1.1
cuSPARSELt/0.6.2.3-CUDA-12.1.1

cuTENSOR

The cuTENSOR Library is a GPU-accelerated tensor linear algebra library providing tensor contraction, reduction and elementwise operations.

Versions Environment loading command (via Lmod)
1.7.0.1-CUDA-12.0.0
cuTENSOR/1.7.0.1-CUDA-12.0.0

dask

Dask natively scales Python. Dask provides advanced parallelism for analytics, enabling performance at scale for the tools you love.

Versions Environment loading command (via Lmod)
2025.5.1
GCC/14.2.0 dask/2025.5.1
2021.9.1
GCC/10.3.0 OpenMPI/4.1.1 dask/2021.9.1

deeptime

Deeptime is a general purpose Python library offering various tools to estimate dynamical models based on time-series data including conventional linear learning methods, such as Markov State Models (MSMs), Hidden Markov Models (HMMs) and Koopman models, as well as kernel and deep learning approaches such as VAMPnets and deep MSMs.

Versions Environment loading command (via Lmod)
0.4.4-Python-3.11.3
GCC/12.3.0 OpenMPI/4.1.5 deeptime/0.4.4-Python-3.11.3

dftd3-lib

This is a repackaged version of the DFTD3 program by S. Grimme and his coworkers. The original program (V3.1 Rev 1) was downloaded at 2016-04-03. It has been converted to free format and encapsulated into modules.

Versions Environment loading command (via Lmod)
0.9
GCCcore/11.3.0 dftd3-lib/0.9

dftd4

This is a repackaged version of the DFTD3 program by S. Grimme and his coworkers. The original program (V3.1 Rev 1) was downloaded at 2016-04-03. It has been converted to free format and encapsulated into modules.

Versions Environment loading command (via Lmod)
3.4.0
intel-compilers/2022.1.0 impi/2021.6.0 dftd4/3.4.0

dill

dill extends python's pickle module for serializing and de-serializing python objects to the majority of the built-in python types. Serialization is the process of converting an object to a byte stream, and the inverse of which is converting a byte stream back to on python object hierarchy.

Versions Environment loading command (via Lmod)
0.3.6
GCCcore/11.3.0 dill/0.3.6

double-conversion

Efficient binary-decimal and decimal-binary conversion routines for IEEE doubles.

Versions Environment loading command (via Lmod)
3.3.0
GCCcore/13.2.0 double-conversion/3.3.0
3.3.0
GCCcore/12.3.0 double-conversion/3.3.0
3.2.0
GCCcore/11.3.0 double-conversion/3.2.0
3.1.5
GCCcore/11.2.0 double-conversion/3.1.5
3.1.5
GCCcore/10.3.0 double-conversion/3.1.5

eSpeak-NG

The eSpeak NG is a compact open source software text-to-speech synthesizer for Linux, Windows, Android and other operating systems. It supports more than 100 languages and accents. It is based on the eSpeak engine created by Jonathan Duddington.

Versions Environment loading command (via Lmod)
1.51
GCC/12.3.0 eSpeak-NG/1.51

elfutils

The elfutils project provides libraries and tools for ELF files and DWARF data.

Versions Environment loading command (via Lmod)
0.187
GCCcore/11.3.0 elfutils/0.187
0.187
elfutils/0.187
0.185
GCCcore/11.2.0 elfutils/0.185

expat

Expat is an XML parser library written in C. It is a stream-oriented parser in which an application registers handlers for things the parser might find in the XML document (like start tags).

Versions Environment loading command (via Lmod)
2.7.1
GCCcore/14.3.0 expat/2.7.1
2.6.4
GCCcore/14.2.0 expat/2.6.4
2.6.2
GCCcore/13.3.0 expat/2.6.2
2.5.0
GCCcore/13.2.0 expat/2.5.0
2.5.0
GCCcore/12.3.0 expat/2.5.0
2.5.0
expat/2.5.0
2.4.9
GCCcore/12.2.0 expat/2.4.9
2.4.8
GCCcore/11.3.0 expat/2.4.8
2.4.8
expat/2.4.8
2.4.1
GCCcore/11.2.0 expat/2.4.1
2.2.9
GCCcore/10.3.0 expat/2.2.9

expecttest

This library implements expect tests (also known as "golden" tests). Expect tests are a method of writing tests where instead of hard-coding the expected output of a test, you run the test to get the output, and the test framework automatically populates the expected output. If the output of the test changes, you can rerun the test with the environment variable EXPECTTEST_ACCEPT=1 to automatically update the expected output.

Versions Environment loading command (via Lmod)
0.1.3
GCCcore/11.3.0 expecttest/0.1.3
0.1.3
GCCcore/10.3.0 expecttest/0.1.3

fastparquet

fastparquet is a python implementation of the parquet format, aiming to integrate into python-based big data work-flows. It is used implicitly by the projects Dask, Pandas and intake-parquet.

Versions Environment loading command (via Lmod)
2024.11.0
GCC/14.2.0 fastparquet/2024.11.0

ffnvcodec

FFmpeg nvidia headers. Adds support for nvenc and nvdec. Requires Nvidia GPU and drivers to be present (picked up dynamically).

Versions Environment loading command (via Lmod)
12.1.14.0
ffnvcodec/12.1.14.0
12.0.16.0
ffnvcodec/12.0.16.0
11.1.5.2
ffnvcodec/11.1.5.2

flatbuffers

FlatBuffers: Memory Efficient Serialization Library Includes the Flatbuffers compiler, C/C++ bindings and Python runtime library.

Versions Environment loading command (via Lmod)
2.0.7
GCCcore/11.3.0 flatbuffers/2.0.7
2.0.0
GCCcore/11.3.0 flatbuffers/2.0.0
2.0.0
GCCcore/11.2.0 flatbuffers/2.0.0
2.0.0
GCCcore/10.3.0 flatbuffers/2.0.0

flatbuffers-python

Python Flatbuffers runtime library.

Versions Environment loading command (via Lmod)
2.0
GCCcore/11.3.0 flatbuffers-python/2.0
2.0
GCCcore/11.2.0 flatbuffers-python/2.0
2.0
GCCcore/10.3.0 flatbuffers-python/2.0

flex

Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, sometimes called a tokenizer, is a program which recognizes lexical patterns in text.

Versions Environment loading command (via Lmod)
2.6.4
GCCcore/14.3.0 flex/2.6.4
2.6.4
GCCcore/14.2.0 flex/2.6.4
2.6.4
GCCcore/13.3.0 flex/2.6.4
2.6.4
GCCcore/13.2.0 flex/2.6.4
2.6.4
GCCcore/12.3.0 flex/2.6.4
2.6.4
GCCcore/12.2.0 flex/2.6.4
2.6.4
GCCcore/11.3.0 flex/2.6.4
2.6.4
GCCcore/11.2.0 flex/2.6.4
2.6.4
GCCcore/10.3.0 flex/2.6.4
2.6.4
flex/2.6.4

flit

A simple packaging tool for simple packages.

Versions Environment loading command (via Lmod)
3.12.0
GCCcore/14.3.0 flit/3.12.0
3.10.1
GCCcore/14.2.0 flit/3.10.1
3.9.0
GCCcore/13.2.0 flit/3.9.0
3.9.0
GCCcore/12.3.0 flit/3.9.0

fontconfig

Fontconfig is a library designed to provide system-wide font configuration, customization and application access.

Versions Environment loading command (via Lmod)
2.16.2
GCCcore/14.2.0 fontconfig/2.16.2
2.15.0
GCCcore/13.3.0 fontconfig/2.15.0
2.14.2
GCCcore/13.2.0 fontconfig/2.14.2
2.14.2
GCCcore/12.3.0 fontconfig/2.14.2
2.14.0
GCCcore/11.3.0 fontconfig/2.14.0
2.14.0
fontconfig/2.14.0
2.13.94
GCCcore/11.2.0 fontconfig/2.13.94
2.13.93
GCCcore/10.3.0 fontconfig/2.13.93

fonttools

fontTools is a library for manipulating fonts, written in Python. The project includes the TTX tool, that can convert TrueType and OpenType fonts to and from an XML text format, which is also called TTX. It supports TrueType, OpenType, AFM and to an extent Type 1 and some Mac-specific formats.

Versions Environment loading command (via Lmod)
4.58.4
GCCcore/14.2.0 fonttools/4.58.4
4.53.1
GCCcore/13.3.0 fonttools/4.53.1

foss

GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.

Versions Environment loading command (via Lmod)
2025a
foss/2025a
2023b
foss/2023b
2023a
foss/2023a
2022b
foss/2022b
2022a
foss/2022a
2021b
foss/2021b
2021a
foss/2021a

freetype

FreeType 2 is a software font engine that is designed to be small, efficient, highly customizable, and portable while capable of producing high-quality output (glyph images). It can be used in graphics libraries, display servers, font conversion tools, text image generation tools, and many other products as well.

Versions Environment loading command (via Lmod)
2.13.3
GCCcore/14.2.0 freetype/2.13.3
2.13.2
GCCcore/13.3.0 freetype/2.13.2
2.13.2
GCCcore/13.2.0 freetype/2.13.2
2.13.0
GCCcore/12.3.0 freetype/2.13.0
2.12.1
GCCcore/11.3.0 freetype/2.12.1
2.12.1
freetype/2.12.1
2.11.0
GCCcore/11.2.0 freetype/2.11.0
2.10.4
GCCcore/10.3.0 freetype/2.10.4

gc

The Boehm-Demers-Weiser conservative garbage collector can be used as a garbage collecting replacement for C malloc or C++ new.

Versions Environment loading command (via Lmod)
8.2.0
gc/8.2.0

gdbm

GNU dbm (or GDBM, for short) is a library of database functions that use extensible hashing and work similar to the standard UNIX dbm. These routines are provided to a programmer needing to create and manipulate a hashed database.

Versions Environment loading command (via Lmod)
1.21
gdbm/1.21

gettext

GNU 'gettext' is an important step for the GNU Translation Project, as it is an asset on which we may build many other steps. This package offers to programmers, translators, and even users, a well integrated set of tools and documentation

Versions Environment loading command (via Lmod)
0.25
gettext/0.25
0.25
GCCcore/14.3.0 gettext/0.25
0.24
GCCcore/14.2.0 gettext/0.24
0.22.5
gettext/0.22.5
0.22.5
GCCcore/13.3.0 gettext/0.22.5
0.22
gettext/0.22
0.22
GCCcore/13.2.0 gettext/0.22
0.21.1
gettext/0.21.1
0.21.1
GCCcore/12.3.0 gettext/0.21.1
0.21.1
GCCcore/12.2.0 gettext/0.21.1
0.21
gettext/0.21
0.21
GCCcore/11.3.0 gettext/0.21
0.21
GCCcore/11.2.0 gettext/0.21
0.21
GCCcore/10.3.0 gettext/0.21

gfbf

GNU Compiler Collection (GCC) based compiler toolchain, including FlexiBLAS (BLAS and LAPACK support) and (serial) FFTW.

Versions Environment loading command (via Lmod)
2025a
gfbf/2025a
2023b
gfbf/2023b
2023a
gfbf/2023a
2022b
gfbf/2022b
2022a
gfbf/2022a

giflib

giflib is a library for reading and writing gif images. It is API and ABI compatible with libungif which was in wide use while the LZW compression algorithm was patented.

Versions Environment loading command (via Lmod)
5.2.2
GCCcore/14.2.0 giflib/5.2.2
5.2.1
GCCcore/13.3.0 giflib/5.2.1
5.2.1
GCCcore/13.2.0 giflib/5.2.1
5.2.1
GCCcore/12.3.0 giflib/5.2.1
5.2.1
GCCcore/11.3.0 giflib/5.2.1
5.2.1
GCCcore/11.2.0 giflib/5.2.1
5.2.1
GCCcore/10.3.0 giflib/5.2.1

git

Git is a free and open source distributed version control system designed to handle everything from small to very large projects with speed and efficiency.

Versions Environment loading command (via Lmod)
2.50.1
GCCcore/14.3.0 git/2.50.1
2.49.0
GCCcore/14.2.0 git/2.49.0
2.42.0
GCCcore/13.2.0 git/2.42.0
2.41.0-nodocs
GCCcore/12.3.0 git/2.41.0-nodocs
2.38.1-nodocs
GCCcore/12.2.0 git/2.38.1-nodocs
2.36.0-nodocs
git/2.36.0-nodocs
2.36.0-nodocs
GCCcore/11.3.0 git/2.36.0-nodocs
2.33.1-nodocs
GCCcore/11.2.0 git/2.33.1-nodocs
2.32.0-nodocs
GCCcore/10.3.0 git/2.32.0-nodocs

git-lfs

Git Large File Storage (LFS) replaces large files such as audio samples, videos, datasets, and graphics with text pointers inside Git, while storing the file contents on a remote server like GitHub.com

Versions Environment loading command (via Lmod)
3.5.1
git-lfs/3.5.1

glew

The OpenGL Extension Wrangler Library (GLEW) is a cross-platform open-source C/C++ extension loading library. GLEW provides efficient run-time mechanisms for determining which OpenGL extensions are supported on the target platform.

Versions Environment loading command (via Lmod)
2.2.0-osmesa
GCCcore/11.3.0 glew/2.2.0-osmesa
2.1.0
GCCcore/11.3.0 glew/2.1.0
2.1.0
GCCcore/10.3.0 glew/2.1.0

glslang

Khronos-reference front end for GLSL/ESSL, partial front end for HLSL, and a SPIR-V generator.

Versions Environment loading command (via Lmod)
15.4.0
GCCcore/13.2.0 glslang/15.4.0

gnupg-bundle

GnuPG — The Universal Crypto Engine

Versions Environment loading command (via Lmod)
20240306
GCCcore/13.2.0 gnupg-bundle/20240306

gnuplot

Portable interactive, function plotting utility

Versions Environment loading command (via Lmod)
5.4.8
GCCcore/12.3.0 gnuplot/5.4.8
5.4.4
GCCcore/11.3.0 gnuplot/5.4.4

gompi

GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support.

Versions Environment loading command (via Lmod)
2025a
gompi/2025a
2023b
gompi/2023b
2023a
gompi/2023a
2022b
gompi/2022b
2022a-mpi-thread-multiple
gompi/2022a-mpi-thread-multiple
2022a
gompi/2022a
2021b
gompi/2021b
2021a
gompi/2021a

googlebenchmark

Google's framework for writing C++ tests on a variety of platforms

Versions Environment loading command (via Lmod)
1.9.4
GCCcore/14.2.0 googlebenchmark/1.9.4

googletest

Google's framework for writing C++ tests on a variety of platforms

Versions Environment loading command (via Lmod)
1.17.0
GCCcore/14.2.0 googletest/1.17.0
1.13.0
GCCcore/12.3.0 googletest/1.13.0
1.11.0
GCCcore/11.3.0 googletest/1.11.0

gperf

GNU gperf is a perfect hash function generator. For a given list of strings, it produces a hash function and hash table, in form of C or C++ code, for looking up a value depending on the input string. The hash function is perfect, which means that the hash table has no collisions, and the hash table lookup needs a single string comparison only.

Versions Environment loading command (via Lmod)
3.3
GCCcore/14.2.0 gperf/3.3
3.1
gperf/3.1
3.1
GCCcore/13.3.0 gperf/3.1
3.1
GCCcore/13.2.0 gperf/3.1
3.1
GCCcore/12.3.0 gperf/3.1
3.1
GCCcore/11.3.0 gperf/3.1
3.1
GCCcore/11.2.0 gperf/3.1
3.1
GCCcore/10.3.0 gperf/3.1

graphite2

Graphite is a "smart font" system developed specifically to handle the complexities of lesser-known languages of the world.

Versions Environment loading command (via Lmod)
1.3.14
GCCcore/13.2.0 graphite2/1.3.14
1.3.14
GCCcore/12.3.0 graphite2/1.3.14
1.3.14
GCCcore/11.3.0 graphite2/1.3.14

groff

Groff (GNU troff) is a typesetting system that reads plain text mixed with formatting commands and produces formatted output.

Versions Environment loading command (via Lmod)
1.23.0
GCCcore/14.2.0 groff/1.23.0
1.23.0
GCCcore/13.3.0 groff/1.23.0
1.23.0
GCCcore/13.2.0 groff/1.23.0
1.22.4
groff/1.22.4
1.22.4
GCCcore/12.3.0 groff/1.22.4
1.22.4
GCCcore/12.2.0 groff/1.22.4
1.22.4
GCCcore/11.3.0 groff/1.22.4
1.22.4
GCCcore/11.2.0 groff/1.22.4
1.22.4
GCCcore/10.3.0 groff/1.22.4

gzip

gzip (GNU zip) is a popular data compression program as a replacement for compress

Versions Environment loading command (via Lmod)
1.14
GCCcore/14.3.0 gzip/1.14
1.13
GCCcore/14.2.0 gzip/1.13
1.13
GCCcore/13.3.0 gzip/1.13
1.13
GCCcore/13.2.0 gzip/1.13
1.12
gzip/1.12
1.12
GCCcore/12.3.0 gzip/1.12
1.12
GCCcore/11.3.0 gzip/1.12
1.10
GCCcore/11.2.0 gzip/1.10
1.10
GCCcore/10.3.0 gzip/1.10

h5py

HDF5 for Python (h5py) is a general-purpose Python interface to the Hierarchical Data Format library, version 5. HDF5 is a versatile, mature scientific software library designed for the fast, flexible storage of enormous amounts of data.

Versions Environment loading command (via Lmod)
3.7.0
GCC/11.3.0 OpenMPI/4.1.4 h5py/3.7.0
3.6.0
GCC/11.2.0 OpenMPI/4.1.2 h5py/3.6.0
3.2.1
GCC/10.3.0 OpenMPI/4.1.1 h5py/3.2.1

hatch-jupyter-builder

Hatch Jupyter Builder is a plugin for the hatchling Python build backend. It is primarily targeted for package authors who are providing JavaScript as part of their Python packages. Typical use cases are Jupyter Lab Extensions and Jupyter Widgets.

Versions Environment loading command (via Lmod)
0.9.1
GCCcore/14.3.0 hatch-jupyter-builder/0.9.1
0.9.1
GCCcore/13.2.0 hatch-jupyter-builder/0.9.1

hatchling

Extensible, standards compliant build backend used by Hatch, a modern, extensible Python project manager.

Versions Environment loading command (via Lmod)
1.27.0
GCCcore/14.3.0 hatchling/1.27.0
1.27.0
GCCcore/14.2.0 hatchling/1.27.0
1.18.0
GCCcore/13.2.0 hatchling/1.18.0
1.18.0
GCCcore/12.3.0 hatchling/1.18.0

help2man

help2man produces simple manual pages from the '--help' and '--version' output of other commands.

Versions Environment loading command (via Lmod)
1.49.3
GCCcore/14.3.0 help2man/1.49.3
1.49.3
GCCcore/14.2.0 help2man/1.49.3
1.49.3
GCCcore/13.3.0 help2man/1.49.3
1.49.3
GCCcore/13.2.0 help2man/1.49.3
1.49.3
GCCcore/12.3.0 help2man/1.49.3
1.49.2
GCCcore/12.2.0 help2man/1.49.2
1.49.2
GCCcore/11.3.0 help2man/1.49.2
1.48.3
GCCcore/11.2.0 help2man/1.48.3
1.48.3
GCCcore/10.3.0 help2man/1.48.3

hiredis

Hiredis is a minimalistic C client library for the Redis database. It is minimalistic because it just adds minimal support for the protocol, but at the same time it uses a high level printf-alike API in order to make it much higher level than otherwise suggested by its minimal code base and the lack of explicit bindings for every Redis command.

Versions Environment loading command (via Lmod)
1.2.0
GCCcore/13.2.0 hiredis/1.2.0

hwloc

The Portable Hardware Locality (hwloc) software package provides a portable abstraction (across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various system attributes such as cache and memory information as well as the locality of I/O devices such as network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering information about modern computing hardware so as to exploit it accordingly and efficiently.

Versions Environment loading command (via Lmod)
2.11.2
GCCcore/14.2.0 hwloc/2.11.2
2.9.2
GCCcore/13.2.0 hwloc/2.9.2
2.9.1
GCCcore/12.3.0 hwloc/2.9.1
2.8.0
GCCcore/12.2.0 hwloc/2.8.0
2.7.1
hwloc/2.7.1
2.7.1
GCCcore/11.3.0 hwloc/2.7.1
2.5.0
GCCcore/11.2.0 hwloc/2.5.0
2.4.1
GCCcore/10.3.0 hwloc/2.4.1

hypothesis

Hypothesis is an advanced testing library for Python. It lets you write tests which are parametrized by a source of examples, and then generates simple and comprehensible examples that make your tests fail. This lets you find more bugs in your code with less work.

Versions Environment loading command (via Lmod)
6.133.2
GCCcore/14.2.0 hypothesis/6.133.2
6.82.0
GCCcore/12.3.0 hypothesis/6.82.0
6.68.2
GCCcore/12.2.0 hypothesis/6.68.2
6.46.7
GCCcore/11.3.0 hypothesis/6.46.7
6.14.6
GCCcore/11.2.0 hypothesis/6.14.6
6.13.1
GCCcore/10.3.0 hypothesis/6.13.1

iimpi

Intel C/C++ and Fortran compilers, alongside Intel MPI.

Versions Environment loading command (via Lmod)
2023a
iimpi/2023a
2022a
iimpi/2022a

imkl

Intel oneAPI Math Kernel Library

Versions Environment loading command (via Lmod)
2023.1.0
imkl/2023.1.0
2022.1.0
imkl/2022.1.0
2022.0.1
imkl/2022.0.1
2021.4.0
imkl/2021.4.0

imkl-FFTW

FFTW interfaces using Intel oneAPI Math Kernel Library

Versions Environment loading command (via Lmod)
2022.1.0
intel-compilers/2022.1.0 impi/2021.6.0 imkl-FFTW/2022.1.0

impi

Intel MPI Library, compatible with MPICH ABI

Versions Environment loading command (via Lmod)
2021.9.0
intel-compilers/2023.1.0 impi/2021.9.0
2021.6.0
intel-compilers/2022.1.0 impi/2021.6.0

intel

Compiler toolchain including Intel compilers, Intel MPI and Intel Math Kernel Library (MKL).

Versions Environment loading command (via Lmod)
2022a
intel/2022a

intel-compilers

Intel C, C++ & Fortran compilers (classic and oneAPI)

Versions Environment loading command (via Lmod)
2023.2.1
intel-compilers/2023.2.1
2023.1.0
intel-compilers/2023.1.0
2023.0.0
intel-compilers/2023.0.0
2022.1.0
intel-compilers/2022.1.0
2021.4.0
intel-compilers/2021.4.0

intltool

intltool is a set of tools to centralize translation of many different file formats using GNU gettext-compatible PO files.

Versions Environment loading command (via Lmod)
0.51.0
intltool/0.51.0
0.51.0
GCCcore/14.2.0 intltool/0.51.0
0.51.0
GCCcore/13.3.0 intltool/0.51.0
0.51.0
GCCcore/13.2.0 intltool/0.51.0
0.51.0
GCCcore/12.3.0 intltool/0.51.0
0.51.0
GCCcore/11.3.0 intltool/0.51.0
0.51.0
GCCcore/11.2.0 intltool/0.51.0
0.51.0
GCCcore/10.3.0 intltool/0.51.0

iomkl

Intel Cluster Toolchain Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MKL & OpenMPI.

Versions Environment loading command (via Lmod)
2023a
iomkl/2023a

itac

The Intel Trace Collector is a low-overhead tracing library that performs event-based tracing in applications. The Intel Trace Analyzer provides a convenient way to monitor application activities gathered by the Intel Trace Collector through graphical displays.

Versions Environment loading command (via Lmod)
2021.6.0
itac/2021.6.0

jbig2enc

JBIG2 encodes bi-level (1 bpp) images using a number of clever tricks to get better compression than G4.

Versions Environment loading command (via Lmod)
0.30
GCCcore/13.2.0 jbig2enc/0.30

jbigkit

JBIG-KIT is a software implementation of the JBIG1 data compression standard (ITU-T T.82), which was designed for bi-level image data, such as scanned documents.

Versions Environment loading command (via Lmod)
2.1
jbigkit/2.1
2.1
GCCcore/14.2.0 jbigkit/2.1
2.1
GCCcore/13.3.0 jbigkit/2.1
2.1
GCCcore/13.2.0 jbigkit/2.1
2.1
GCCcore/12.3.0 jbigkit/2.1
2.1
GCCcore/11.3.0 jbigkit/2.1
2.1
GCCcore/11.2.0 jbigkit/2.1
2.1
GCCcore/10.3.0 jbigkit/2.1

jedi

Jedi - an awesome autocompletion, static analysis and refactoring library for Python.

Versions Environment loading command (via Lmod)
0.19.2
GCCcore/14.3.0 jedi/0.19.2
0.19.1
GCCcore/13.2.0 jedi/0.19.1

jq

jq is a lightweight and flexible command-line JSON processor.

Versions Environment loading command (via Lmod)
1.6
jq/1.6

json-c

JSON-C implements a reference counting object model that allows you to easily construct JSON objects in C, output them as JSON formatted strings and parse JSON formatted strings back into the C representation of JSON objects.

Versions Environment loading command (via Lmod)
0.16
GCCcore/12.3.0 json-c/0.16

jupyter-code-proxy

Plugin for jupyter-server-proxy to run an instance of Visual Studio Code Server from JupyterLab.

Versions Environment loading command (via Lmod)
1.0.0
GCCcore/14.3.0 jupyter-code-proxy/1.0.0

jupyter-server

The Jupyter Server provides the backend (i.e. the core services, APIs, and REST endpoints) for Jupyter web applications like Jupyter notebook, JupyterLab, and Voila.

Versions Environment loading command (via Lmod)
2.17.0
GCCcore/14.3.0 jupyter-server/2.17.0
2.14.0
GCCcore/13.2.0 jupyter-server/2.14.0
2.7.2
GCCcore/12.3.0 jupyter-server/2.7.2
1.21.0
GCCcore/11.3.0 jupyter-server/1.21.0

jupyter-server-proxy

Jupyter Server Proxy lets you run arbitrary external processes (such as RStudio, Shiny Server, Syncthing, PostgreSQL, Code Server, etc) alongside your notebook server and provide authenticated web access to them using a path like /rstudio next to others like /lab. Alongside the python package that provides the main functionality, the JupyterLab extension (@jupyterlab/server-proxy) provides buttons in the JupyterLab launcher window to get to RStudio for example.

Versions Environment loading command (via Lmod)
4.4.0
GCCcore/14.3.0 jupyter-server-proxy/4.4.0
4.1.2
GCCcore/13.2.0 jupyter-server-proxy/4.1.2
4.1.2
GCCcore/12.3.0 jupyter-server-proxy/4.1.2

jupyterlab_nvdashboard

NVDashboard is a JupyterLab extension for displaying GPU usage dashboards. It enables JupyterLab users to visualize system hardware metrics within the same interactive environment they use for development. Supported metrics include: GPU-compute utilization, GPU-memory consumption, PCIe throughput and NVLink throughput

Versions Environment loading command (via Lmod)
0.13.0
GCCcore/14.3.0 jupyterlab_nvdashboard/0.13.0
0.11.0
GCCcore/13.2.0 jupyterlab_nvdashboard/0.11.0

jupyterlmod

Jupyter interactive notebook server extension that allows users to interact with environment modules before launching kernels. The extension uses Lmod's Python interface to accomplish module-related tasks like loading, unloading, saving collections, etc.

Versions Environment loading command (via Lmod)
5.3.0
GCCcore/14.3.0 jupyterlmod/5.3.0
5.2.1
GCCcore/13.2.0 jupyterlmod/5.2.1

libGLU

The OpenGL Utility Library (GLU) is a computer graphics library for OpenGL.

Versions Environment loading command (via Lmod)
9.0.3
GCCcore/13.2.0 libGLU/9.0.3
9.0.3
GCCcore/12.3.0 libGLU/9.0.3
9.0.2
libGLU/9.0.2
9.0.2
GCCcore/11.3.0 libGLU/9.0.2
9.0.2
GCCcore/11.2.0 libGLU/9.0.2
9.0.1
GCCcore/10.3.0 libGLU/9.0.1

libaio

Asynchronous input/output library that uses the kernels native interface.

Versions Environment loading command (via Lmod)
0.3.112
libaio/0.3.112

libarchive

Multi-format archive and compression library

Versions Environment loading command (via Lmod)
3.8.1
GCCcore/14.3.0 libarchive/3.8.1
3.7.7
GCCcore/14.2.0 libarchive/3.7.7
3.7.4
GCCcore/13.3.0 libarchive/3.7.4
3.7.2
GCCcore/13.2.0 libarchive/3.7.2
3.6.2
GCCcore/12.3.0 libarchive/3.6.2
3.6.1
libarchive/3.6.1
3.6.1
GCCcore/12.2.0 libarchive/3.6.1
3.6.1
GCCcore/11.3.0 libarchive/3.6.1
3.5.1
GCCcore/11.2.0 libarchive/3.5.1
3.5.1
GCCcore/10.3.0 libarchive/3.5.1

libcerf

libcerf is a self-contained numeric library that provides an efficient and accurate implementation of complex error functions, along with Dawson, Faddeeva, and Voigt functions.

Versions Environment loading command (via Lmod)
2.3
GCCcore/12.3.0 libcerf/2.3
2.1
GCCcore/11.3.0 libcerf/2.1

libde265

libde265 is an open source implementation of the h.265 video codec

Versions Environment loading command (via Lmod)
1.0.15
GCCcore/13.2.0 libde265/1.0.15

libdeflate

Heavily optimized library for DEFLATE/zlib/gzip compression and decompression.

Versions Environment loading command (via Lmod)
1.24
GCCcore/14.2.0 libdeflate/1.24
1.20
GCCcore/13.3.0 libdeflate/1.20
1.19
GCCcore/13.2.0 libdeflate/1.19
1.18
GCCcore/12.3.0 libdeflate/1.18
1.10
GCCcore/11.3.0 libdeflate/1.10

libdrm

Direct Rendering Manager runtime library.

Versions Environment loading command (via Lmod)
2.4.117
GCCcore/13.2.0 libdrm/2.4.117
2.4.115
GCCcore/12.3.0 libdrm/2.4.115
2.4.110
libdrm/2.4.110
2.4.110
GCCcore/11.3.0 libdrm/2.4.110
2.4.107
GCCcore/11.2.0 libdrm/2.4.107
2.4.106
GCCcore/10.3.0 libdrm/2.4.106

libepoxy

Epoxy is a library for handling OpenGL function pointer management for you

Versions Environment loading command (via Lmod)
1.5.10
GCCcore/13.2.0 libepoxy/1.5.10
1.5.10
GCCcore/11.3.0 libepoxy/1.5.10
1.5.8
GCCcore/11.2.0 libepoxy/1.5.8
1.5.8
GCCcore/10.3.0 libepoxy/1.5.8

libevent

The libevent API provides a mechanism to execute a callback function when a specific event occurs on a file descriptor or after a timeout has been reached. Furthermore, libevent also support callbacks due to signals or regular timeouts.

Versions Environment loading command (via Lmod)
2.1.12
GCCcore/14.2.0 libevent/2.1.12
2.1.12
GCCcore/13.2.0 libevent/2.1.12
2.1.12
GCCcore/12.3.0 libevent/2.1.12
2.1.12
GCCcore/12.2.0 libevent/2.1.12
2.1.12
GCCcore/11.3.0 libevent/2.1.12
2.1.12
GCCcore/11.2.0 libevent/2.1.12
2.1.12
GCCcore/10.3.0 libevent/2.1.12

libfabric

Libfabric is a core component of OFI. It is the library that defines and exports the user-space API of OFI, and is typically the only software that applications deal with directly. It works in conjunction with provider libraries, which are often integrated directly into libfabric.

Versions Environment loading command (via Lmod)
2.0.0
GCCcore/14.2.0 libfabric/2.0.0
1.19.0
GCCcore/13.2.0 libfabric/1.19.0
1.18.0
GCCcore/12.3.0 libfabric/1.18.0
1.16.1
GCCcore/12.2.0 libfabric/1.16.1
1.15.1
GCCcore/11.3.0 libfabric/1.15.1
1.13.2
GCCcore/11.2.0 libfabric/1.13.2
1.12.1
GCCcore/10.3.0 libfabric/1.12.1

libffi

The libffi library provides a portable, high level programming interface to various calling conventions. This allows a programmer to call any function specified by a call interface description at run-time.

Versions Environment loading command (via Lmod)
3.5.1
GCCcore/14.3.0 libffi/3.5.1
3.4.5
GCCcore/14.2.0 libffi/3.4.5
3.4.5
GCCcore/13.3.0 libffi/3.4.5
3.4.4
GCCcore/13.2.0 libffi/3.4.4
3.4.4
GCCcore/12.3.0 libffi/3.4.4
3.4.4
GCCcore/12.2.0 libffi/3.4.4
3.4.2
libffi/3.4.2
3.4.2
GCCcore/11.3.0 libffi/3.4.2
3.4.2
GCCcore/11.2.0 libffi/3.4.2
3.3
GCCcore/10.3.0 libffi/3.3

libgd

GD is an open source code library for the dynamic creation of images by programmers.

Versions Environment loading command (via Lmod)
2.3.3
GCCcore/14.2.0 libgd/2.3.3
2.3.3
GCCcore/12.3.0 libgd/2.3.3
2.3.3
GCCcore/11.3.0 libgd/2.3.3

libgeotiff

Library for reading and writing coordinate system information from/to GeoTIFF files

Versions Environment loading command (via Lmod)
1.7.1
GCCcore/12.3.0 libgeotiff/1.7.1
1.7.1
GCCcore/11.3.0 libgeotiff/1.7.1

libgit2

libgit2 is a portable, pure C implementation of the Git core methods provided as a re-entrant linkable library with a solid API, allowing you to write native speed custom Git applications in any language which supports C bindings.

Versions Environment loading command (via Lmod)
1.7.1
GCCcore/12.3.0 libgit2/1.7.1
1.4.3
GCCcore/11.3.0 libgit2/1.4.3

libglvnd

libglvnd is a vendor-neutral dispatch layer for arbitrating OpenGL API calls between multiple vendors.

Versions Environment loading command (via Lmod)
1.7.0
GCCcore/13.2.0 libglvnd/1.7.0
1.6.0
GCCcore/12.3.0 libglvnd/1.6.0
1.4.0
libglvnd/1.4.0
1.4.0
GCCcore/11.3.0 libglvnd/1.4.0
1.3.3
GCCcore/11.2.0 libglvnd/1.3.3
1.3.3
GCCcore/10.3.0 libglvnd/1.3.3

libheif

libheif is an HEIF and AVIF file format decoder and encoder

Versions Environment loading command (via Lmod)
1.19.5
GCCcore/13.2.0 libheif/1.19.5

libiconv

Libiconv converts from one character encoding to another through Unicode conversion

Versions Environment loading command (via Lmod)
1.18
GCCcore/14.3.0 libiconv/1.18
1.18
GCCcore/14.2.0 libiconv/1.18
1.17
GCCcore/13.3.0 libiconv/1.17
1.17
GCCcore/13.2.0 libiconv/1.17
1.17
GCCcore/12.3.0 libiconv/1.17
1.17
GCCcore/11.3.0 libiconv/1.17
1.16
GCCcore/11.2.0 libiconv/1.16

libidn2

Libidn2 implements the revised algorithm for internationalized domain names called IDNA2008/TR46.

Versions Environment loading command (via Lmod)
2.3.8
GCCcore/14.3.0 libidn2/2.3.8
2.3.7
GCCcore/14.2.0 libidn2/2.3.7
2.3.2
libidn2/2.3.2

libjpeg-turbo

libjpeg-turbo is a fork of the original IJG libjpeg which uses SIMD to accelerate baseline JPEG compression and decompression. libjpeg is a library that implements JPEG image encoding, decoding and transcoding.

Versions Environment loading command (via Lmod)
3.1.0
GCCcore/14.2.0 libjpeg-turbo/3.1.0
3.0.1
GCCcore/13.3.0 libjpeg-turbo/3.0.1
3.0.1
GCCcore/13.2.0 libjpeg-turbo/3.0.1
2.1.5.1
GCCcore/12.3.0 libjpeg-turbo/2.1.5.1
2.1.3
libjpeg-turbo/2.1.3
2.1.3
GCCcore/11.3.0 libjpeg-turbo/2.1.3
2.0.6
libjpeg-turbo/2.0.6
2.0.6
GCCcore/11.2.0 libjpeg-turbo/2.0.6
2.0.6
GCCcore/10.3.0 libjpeg-turbo/2.0.6

libnsl

The libnsl package contains the public client interface for NIS(YP).

Versions Environment loading command (via Lmod)
1.3.0
GCCcore/11.2.0 libnsl/1.3.0

libogg

Ogg is a multimedia container format, and the native file and stream format for the Xiph.org multimedia codecs.

Versions Environment loading command (via Lmod)
1.3.5
GCCcore/12.3.0 libogg/1.3.5
1.3.5
GCCcore/11.3.0 libogg/1.3.5

libopus

Opus is a totally open, royalty-free, highly versatile audio codec. Opus is unmatched for interactive speech and music transmission over the Internet, but is also intended for storage and streaming applications. It is standardized by the Internet Engineering Task Force (IETF) as RFC 6716 which incorporated technology from Skype’s SILK codec and Xiph.Org’s CELT codec.

Versions Environment loading command (via Lmod)
1.3.1
GCCcore/11.3.0 libopus/1.3.1

libpciaccess

Generic PCI access library.

Versions Environment loading command (via Lmod)
0.18.1
GCCcore/14.2.0 libpciaccess/0.18.1
0.18.1
GCCcore/13.3.0 libpciaccess/0.18.1
0.17
GCCcore/13.2.0 libpciaccess/0.17
0.17
GCCcore/12.3.0 libpciaccess/0.17
0.17
GCCcore/12.2.0 libpciaccess/0.17
0.16
libpciaccess/0.16
0.16
GCCcore/11.3.0 libpciaccess/0.16
0.16
GCCcore/11.2.0 libpciaccess/0.16
0.16
GCCcore/10.3.0 libpciaccess/0.16

libpng

libpng is the official PNG reference library

Versions Environment loading command (via Lmod)
1.6.48
GCCcore/14.2.0 libpng/1.6.48
1.6.43
GCCcore/13.3.0 libpng/1.6.43
1.6.40
GCCcore/13.2.0 libpng/1.6.40
1.6.39
GCCcore/12.3.0 libpng/1.6.39
1.6.37
libpng/1.6.37
1.6.37
GCCcore/11.3.0 libpng/1.6.37
1.6.37
GCCcore/11.2.0 libpng/1.6.37
1.6.37
GCCcore/10.3.0 libpng/1.6.37
1.2.58
libpng/1.2.58

libpsl

C library for the Public Suffix List

Versions Environment loading command (via Lmod)
0.21.5
GCCcore/14.3.0 libpsl/0.21.5
0.21.5
GCCcore/14.2.0 libpsl/0.21.5

libreadline

The GNU Readline library provides a set of functions for use by applications that allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. The Readline library includes additional functions to maintain a list of previously-entered command lines, to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.

Versions Environment loading command (via Lmod)
8.2
libreadline/8.2
8.2
GCCcore/14.3.0 libreadline/8.2
8.2
GCCcore/14.2.0 libreadline/8.2
8.2
GCCcore/13.3.0 libreadline/8.2
8.2
GCCcore/13.2.0 libreadline/8.2
8.2
GCCcore/12.3.0 libreadline/8.2
8.2
GCCcore/12.2.0 libreadline/8.2
8.1.2
libreadline/8.1.2
8.1.2
GCCcore/11.3.0 libreadline/8.1.2
8.1
GCCcore/11.2.0 libreadline/8.1
8.1
GCCcore/10.3.0 libreadline/8.1
8.0
libreadline/8.0

libsndfile

Libsndfile is a C library for reading and writing files containing sampled sound (such as MS Windows WAV and the Apple/SGI AIFF format) through one standard library interface.

Versions Environment loading command (via Lmod)
1.1.0
GCCcore/11.3.0 libsndfile/1.1.0

libsodium

Sodium is a modern, easy-to-use software library for encryption, decryption, signatures, password hashing and more.

Versions Environment loading command (via Lmod)
1.0.20
GCCcore/14.3.0 libsodium/1.0.20
1.0.19
GCCcore/13.2.0 libsodium/1.0.19
1.0.18
GCCcore/12.3.0 libsodium/1.0.18
1.0.18
GCCcore/11.3.0 libsodium/1.0.18
1.0.18
GCCcore/10.3.0 libsodium/1.0.18

libtasn1

Libtasn1 is the ASN.1 library used by GnuTLS, GNU Shishi and some other packages. It was written by Fabio Fiorina, and has been shipped as part of GnuTLS for some time but is now a proper GNU package.

Versions Environment loading command (via Lmod)
4.18.0
libtasn1/4.18.0

libtirpc

Libtirpc is a port of Suns Transport-Independent RPC library to Linux.

Versions Environment loading command (via Lmod)
1.3.3
GCCcore/12.3.0 libtirpc/1.3.3
1.3.2
GCCcore/11.3.0 libtirpc/1.3.2
1.3.2
GCCcore/11.2.0 libtirpc/1.3.2

libtommath

LibTomMath is a free open source portable number theoretic multiple-precision integer (MPI) library written entirely in C.

Versions Environment loading command (via Lmod)
1.3.0
GCCcore/14.3.0 libtommath/1.3.0

libtool

GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries behind a consistent, portable interface.

Versions Environment loading command (via Lmod)
2.5.4
GCCcore/14.3.0 libtool/2.5.4
2.5.4
GCCcore/14.2.0 libtool/2.5.4
2.4.7
libtool/2.4.7
2.4.7
GCCcore/13.3.0 libtool/2.4.7
2.4.7
GCCcore/13.2.0 libtool/2.4.7
2.4.7
GCCcore/12.3.0 libtool/2.4.7
2.4.7
GCCcore/12.2.0 libtool/2.4.7
2.4.7
GCCcore/11.3.0 libtool/2.4.7
2.4.6
GCCcore/11.2.0 libtool/2.4.6
2.4.6
GCCcore/10.3.0 libtool/2.4.6

libunistring

This library provides functions for manipulating Unicode strings and for manipulating C strings according to the Unicode standard.

Versions Environment loading command (via Lmod)
1.3
GCCcore/14.3.0 libunistring/1.3
1.3
GCCcore/14.2.0 libunistring/1.3
1.0
libunistring/1.0

libunwind

The primary goal of libunwind is to define a portable and efficient C programming interface (API) to determine the call-chain of a program. The API additionally provides the means to manipulate the preserved (callee-saved) state of each call-frame and to resume execution at any point in the call-chain (non-local goto). The API supports both local (same-process) and remote (across-process) operation. As such, the API is useful in a number of applications

Versions Environment loading command (via Lmod)
1.6.2
libunwind/1.6.2
1.6.2
GCCcore/13.2.0 libunwind/1.6.2
1.6.2
GCCcore/12.3.0 libunwind/1.6.2
1.6.2
GCCcore/11.3.0 libunwind/1.6.2
1.5.0
GCCcore/11.2.0 libunwind/1.5.0
1.4.0
GCCcore/10.3.0 libunwind/1.4.0

libvorbis

Ogg Vorbis is a fully open, non-proprietary, patent-and-royalty-free, general-purpose compressed audio format

Versions Environment loading command (via Lmod)
1.3.7
GCCcore/11.3.0 libvorbis/1.3.7

libwebp

WebP is a modern image format that provides superior lossless and lossy compression for images on the web. Using WebP, webmasters and web developers can create smaller, richer images that make the web faster.

Versions Environment loading command (via Lmod)
1.5.0
GCCcore/14.2.0 libwebp/1.5.0
1.4.0
GCCcore/13.3.0 libwebp/1.4.0
1.3.2
GCCcore/13.2.0 libwebp/1.3.2
1.2.4
GCCcore/11.3.0 libwebp/1.2.4
1.2.0
GCCcore/10.3.0 libwebp/1.2.0

libxc

Libxc is a library of exchange-correlation functionals for density-functional theory. The aim is to provide a portable, well tested and reliable set of exchange and correlation functionals.

Versions Environment loading command (via Lmod)
6.2.2-disable-fhc
NVHPC/24.5-CUDA-12.4.0 libxc/6.2.2-disable-fhc
5.2.3
NVHPC/22.11-CUDA-11.7.0 libxc/5.2.3
5.2.3
intel-compilers/2022.1.0 libxc/5.2.3
5.2.3
GCC/11.3.0 libxc/5.2.3
5.1.6
NVHPC/22.11-CUDA-11.7.0 libxc/5.1.6
5.1.6
NVHPC/22.7 libxc/5.1.6
5.1.6
GCC/11.2.0 libxc/5.1.6

libxml2

Libxml2 is the XML C parser and toolchain developed for the Gnome project (but usable outside of the Gnome platform).

Versions Environment loading command (via Lmod)
2.14.3
GCCcore/14.3.0 libxml2/2.14.3
2.13.4
GCCcore/14.2.0 libxml2/2.13.4
2.12.7
GCCcore/13.3.0 libxml2/2.12.7
2.11.5
GCCcore/13.2.0 libxml2/2.11.5
2.11.4
GCCcore/12.3.0 libxml2/2.11.4
2.10.3
GCCcore/12.2.0 libxml2/2.10.3
2.9.13
libxml2/2.9.13
2.9.13
GCCcore/11.3.0 libxml2/2.9.13
2.9.10
GCCcore/11.2.0 libxml2/2.9.10
2.9.10
GCCcore/10.3.0 libxml2/2.9.10

libxslt

Libxslt is the XSLT C library developed for the GNOME project (but usable outside of the Gnome platform).

Versions Environment loading command (via Lmod)
1.1.43
GCCcore/14.3.0 libxslt/1.1.43
1.1.38
GCCcore/13.2.0 libxslt/1.1.38
1.1.38
GCCcore/12.3.0 libxslt/1.1.38
1.1.34
GCCcore/11.3.0 libxslt/1.1.34
1.1.34
GCCcore/11.2.0 libxslt/1.1.34

libxsmm

LIBXSMM is a library for small dense and small sparse matrix-matrix multiplications targeting Intel Architecture (x86).

Versions Environment loading command (via Lmod)
1.17
GCC/11.3.0 libxsmm/1.17
1.17
GCC/11.2.0 libxsmm/1.17

libyaml

LibYAML is a YAML parser and emitter written in C.

Versions Environment loading command (via Lmod)
0.2.5
GCCcore/14.3.0 libyaml/0.2.5
0.2.5
GCCcore/14.2.0 libyaml/0.2.5
0.2.5
GCCcore/13.2.0 libyaml/0.2.5
0.2.5
GCCcore/12.3.0 libyaml/0.2.5
0.2.5
GCCcore/11.3.0 libyaml/0.2.5
0.2.5
GCCcore/10.3.0 libyaml/0.2.5

linaro-forge

Linaro Forge combines Linaro DDT, the leading debugger for time-saving high performance application debugging, Linaro MAP, the trusted performance profiler for invaluable optimization advice across native and Python HPC codes, and Linaro Performance Reports for advanced reporting capabilities.

Versions Environment loading command (via Lmod)
24.1.1
linaro-forge/24.1.1
23.0.4
linaro-forge/23.0.4

lit

lit is a portable tool for executing LLVM and Clang style test suites, summarizing their results, and providing indication of failures.

Versions Environment loading command (via Lmod)
18.1.7
GCCcore/13.2.0 lit/18.1.7

lxml

The lxml XML toolkit is a Pythonic binding for the C libraries libxml2 and libxslt.

Versions Environment loading command (via Lmod)
6.0.0
GCCcore/14.3.0 lxml/6.0.0
4.9.3
GCCcore/13.2.0 lxml/4.9.3
4.9.2
GCCcore/12.3.0 lxml/4.9.2
4.9.1
GCCcore/11.3.0 lxml/4.9.1

lz4

LZ4 is lossless compression algorithm, providing compression speed at 400 MB/s per core. It features an extremely fast decoder, with speed in multiple GB/s per core.

Versions Environment loading command (via Lmod)
1.10.0
GCCcore/14.3.0 lz4/1.10.0
1.10.0
GCCcore/14.2.0 lz4/1.10.0
1.9.4
lz4/1.9.4
1.9.4
GCCcore/13.3.0 lz4/1.9.4
1.9.4
GCCcore/13.2.0 lz4/1.9.4
1.9.4
GCCcore/12.3.0 lz4/1.9.4
1.9.3
lz4/1.9.3
1.9.3
GCCcore/11.3.0 lz4/1.9.3
1.9.3
GCCcore/11.2.0 lz4/1.9.3
1.9.3
GCCcore/10.3.0 lz4/1.9.3

magma

The MAGMA project aims to develop a dense linear algebra library similar to LAPACK but for heterogeneous/hybrid architectures, starting with current Multicore+GPU systems.

Versions Environment loading command (via Lmod)
2.6.2-CUDA-11.7.0
GCC/11.3.0 OpenMPI/4.1.4 magma/2.6.2-CUDA-11.7.0
2.6.2-CUDA-11.6.0
GCC/11.2.0 OpenMPI/4.1.2 magma/2.6.2-CUDA-11.6.0
2.6.1-CUDA-11.3.1
GCC/10.3.0 OpenMPI/4.1.1 magma/2.6.1-CUDA-11.3.1

make

GNU version of make utility

Versions Environment loading command (via Lmod)
4.4.1
GCCcore/14.2.0 make/4.4.1
4.4.1
GCCcore/13.2.0 make/4.4.1
4.4.1
GCCcore/12.3.0 make/4.4.1
4.3
GCCcore/11.2.0 make/4.3

makeinfo

makeinfo is part of the Texinfo project, the official documentation format of the GNU project.

Versions Environment loading command (via Lmod)
7.0.3
makeinfo/7.0.3
7.0.3
GCCcore/12.3.0 makeinfo/7.0.3
6.7-minimal
GCCcore/10.3.0 makeinfo/6.7-minimal

matplotlib

matplotlib is a python 2D plotting library which produces publication quality figures in a variety of hardcopy formats and interactive environments across platforms. matplotlib can be used in python scripts, the python and ipython shell, web application servers, and six graphical user interface toolkits.

Versions Environment loading command (via Lmod)
3.10.3
GCC/14.2.0 matplotlib/3.10.3
3.7.2
GCC/12.3.0 matplotlib/3.7.2
3.4.3
GCC/11.2.0 OpenMPI/4.1.2 matplotlib/3.4.3
3.4.2
GCC/10.3.0 OpenMPI/4.1.1 matplotlib/3.4.2

maturin

This project is meant as a zero configuration replacement for setuptools-rust and milksnake. It supports building wheels for python 3.5+ on windows, linux, mac and freebsd, can upload them to pypi and has basic pypy and graalpy support.

Versions Environment loading command (via Lmod)
1.9.1
GCCcore/14.3.0 maturin/1.9.1
1.8.3
GCCcore/14.2.0 maturin/1.8.3
1.4.0-Rust-1.75.0
GCCcore/14.2.0 maturin/1.4.0-Rust-1.75.0
1.3.1
GCCcore/13.2.0 maturin/1.3.1
1.1.0
GCCcore/12.3.0 maturin/1.1.0

meson-python

Python build backend (PEP 517) for Meson projects

Versions Environment loading command (via Lmod)
0.18.0
GCCcore/14.2.0 meson-python/0.18.0
0.13.2
GCCcore/12.3.0 meson-python/0.13.2

model-angelo

ModelAngelo is an automatic atomic model building program for cryo-EM maps.

Versions Environment loading command (via Lmod)
1.0.13
model-angelo/1.0.13

monai

Medical Open Network for AI

Versions Environment loading command (via Lmod)
1.2.0
monai/1.2.0
1.0.1
monai/1.0.1

mpi4py

MPI for Python (mpi4py) provides bindings of the Message Passing Interface (MPI) standard for the Python programming language, allowing any Python program to exploit multiple processors.

Versions Environment loading command (via Lmod)
3.1.4
GCC/12.3.0 OpenMPI/4.1.5 mpi4py/3.1.4

mumax3

GPU accelerated micromagnetic simulator

Versions Environment loading command (via Lmod)
3.11.1-CUDA-12.1.1
GCC/12.3.0 mumax3/3.11.1-CUDA-12.1.1
3.10-CUDA-12.1.1
GCC/12.3.0 mumax3/3.10-CUDA-12.1.1

nano

a simple editor, inspired by Pico

Versions Environment loading command (via Lmod)
6.4
GCCcore/11.3.0 nano/6.4
6.2
nano/6.2

ncurses

The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses.

Versions Environment loading command (via Lmod)
6.5
ncurses/6.5
6.5
GCCcore/14.3.0 ncurses/6.5
6.5
GCCcore/14.2.0 ncurses/6.5
6.5
GCCcore/13.3.0 ncurses/6.5
6.4
ncurses/6.4
6.4
GCCcore/13.2.0 ncurses/6.4
6.4
GCCcore/12.3.0 ncurses/6.4
6.3
ncurses/6.3
6.3
GCCcore/12.2.0 ncurses/6.3
6.3
GCCcore/11.3.0 ncurses/6.3
6.2
ncurses/6.2
6.2
GCCcore/11.2.0 ncurses/6.2
6.2
GCCcore/10.3.0 ncurses/6.2
6.1
ncurses/6.1

netCDF

NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data.

Versions Environment loading command (via Lmod)
4.9.2
GCC/12.3.0 OpenMPI/4.1.5 netCDF/4.9.2
4.9.0
GCC/11.3.0 OpenMPI/4.1.4 netCDF/4.9.0
4.8.1
GCC/11.2.0 OpenMPI/4.1.2 netCDF/4.8.1

netCDF-Fortran

NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data.

Versions Environment loading command (via Lmod)
4.6.1
GCC/12.3.0 OpenMPI/4.1.5 netCDF-Fortran/4.6.1
4.6.0
GCC/11.3.0 OpenMPI/4.1.4 netCDF-Fortran/4.6.0
4.5.3
GCC/11.2.0 OpenMPI/4.1.2 netCDF-Fortran/4.5.3

nettle

Nettle is a cryptographic library that is designed to fit easily in more or less any context: In crypto toolkits for object-oriented languages (C++, Python, Pike, ...), in applications like LSH or GNUPG, or even in kernel space.

Versions Environment loading command (via Lmod)
3.8
GCCcore/11.3.0 nettle/3.8
3.7.3
nettle/3.7.3

networkx

NetworkX is a Python package for the creation, manipulation, and study of the structure, dynamics, and functions of complex networks.

Versions Environment loading command (via Lmod)
3.1
GCC/12.3.0 networkx/3.1
2.8.4
GCC/11.3.0 OpenMPI/4.1.4 networkx/2.8.4
2.6.3
GCC/11.2.0 OpenMPI/4.1.2 networkx/2.6.3
2.5.1
GCC/10.3.0 OpenMPI/4.1.1 networkx/2.5.1

nlohmann_json

JSON for Modern C++

Versions Environment loading command (via Lmod)
3.11.2
GCCcore/12.3.0 nlohmann_json/3.11.2
3.10.5
GCCcore/11.3.0 nlohmann_json/3.10.5

nodejs

Node.js is a platform built on Chrome's JavaScript runtime for easily building fast, scalable network applications. Node.js uses an event-driven, non-blocking I/O model that makes it lightweight and efficient, perfect for data-intensive real-time applications that run across distributed devices.

Versions Environment loading command (via Lmod)
22.17.1
GCCcore/14.3.0 nodejs/22.17.1
20.9.0
GCCcore/13.2.0 nodejs/20.9.0
18.17.1
GCCcore/12.3.0 nodejs/18.17.1
16.15.1
GCCcore/11.3.0 nodejs/16.15.1

nsync

nsync is a C library that exports various synchronization primitives, such as mutexes

Versions Environment loading command (via Lmod)
1.25.0
GCCcore/11.3.0 nsync/1.25.0
1.24.0
GCCcore/11.2.0 nsync/1.24.0
1.24.0
GCCcore/10.3.0 nsync/1.24.0

numactl

The numactl program allows you to run your application program on specific cpu's and memory nodes. It does this by supplying a NUMA memory policy to the operating system before running your program. The libnuma library provides convenient ways for you to add NUMA memory policies into your own program.

Versions Environment loading command (via Lmod)
2.0.19
GCCcore/14.2.0 numactl/2.0.19
2.0.16
GCCcore/13.2.0 numactl/2.0.16
2.0.16
GCCcore/12.3.0 numactl/2.0.16
2.0.16
GCCcore/12.2.0 numactl/2.0.16
2.0.14
numactl/2.0.14
2.0.14
GCCcore/11.3.0 numactl/2.0.14
2.0.14
GCCcore/11.2.0 numactl/2.0.14
2.0.14
GCCcore/10.3.0 numactl/2.0.14

numba

Numba is an Open Source NumPy-aware optimizing compiler for Python sponsored by Continuum Analytics, Inc. It uses the remarkable LLVM compiler infrastructure to compile Python syntax to machine code.

Versions Environment loading command (via Lmod)
0.58.1
GCC/12.3.0 OpenMPI/4.1.5 numba/0.58.1
0.53.1
GCC/10.3.0 OpenMPI/4.1.1 numba/0.53.1

nvBowtie

nvBowtie is a GPU-accelerated re-engineering of Bowtie2, a very widely used short-read aligner. While being completely rewritten from scratch, nvBowtie reproduces many (though not all) of the features of Bowtie2.

Versions Environment loading command (via Lmod)
1.00.1
GCCcore/13.2.0 nvBowtie/1.00.1

nvofbf

NVHPC based compiler toolchain, including OpenMPI for MPI support.

Versions Environment loading command (via Lmod)
2023b
nvofbf/2023b

nvompic

NVHPC based compiler toolchain, including OpenMPI for MPI support.

Versions Environment loading command (via Lmod)
2023b
nvompic/2023b
2022b
nvompic/2022b
2022a
nvompic/2022a
2021b
nvompic/2021b

ollama

Get up and running with large language models.

Versions Environment loading command (via Lmod)
0.6.2-CUDA-12.4.0
GCCcore/13.2.0 ollama/0.6.2-CUDA-12.4.0

openfe

The OpenFE toolkit provides a free and open-source framework for alchemical free energy calculations.

Versions Environment loading command (via Lmod)
1.3.0-conda
openfe/1.3.0-conda
1.3.0
openfe/1.3.0

p11-kit

Provides a way to load and enumerate PKCS#11 modules. Provides a standard configuration setup for installing PKCS#11 modules in such a way that they're discoverable. Also solves problems with coordinating the use of PKCS#11 by different components or libraries living in the same process.

Versions Environment loading command (via Lmod)
0.24.1
p11-kit/0.24.1

p7zip

p7zip is a quick port of 7z.exe and 7za.exe (CLI version of 7zip) for Unix. 7-Zip is a file archiver with highest compression ratio.

Versions Environment loading command (via Lmod)
17.04
GCCcore/11.2.0 p7zip/17.04

patchelf

PatchELF is a small utility to modify the dynamic linker and RPATH of ELF executables.

Versions Environment loading command (via Lmod)
0.18.0
GCCcore/14.3.0 patchelf/0.18.0
0.18.0
GCCcore/14.2.0 patchelf/0.18.0
0.18.0
GCCcore/13.2.0 patchelf/0.18.0
0.18.0
GCCcore/12.3.0 patchelf/0.18.0

pixman

Pixman is a low-level software library for pixel manipulation, providing features such as image compositing and trapezoid rasterization. Important users of pixman are the cairo graphics library and the X server.

Versions Environment loading command (via Lmod)
0.43.4
GCCcore/13.3.0 pixman/0.43.4
0.42.2
GCCcore/13.2.0 pixman/0.42.2
0.42.2
GCCcore/12.3.0 pixman/0.42.2
0.40.0
pixman/0.40.0
0.40.0
GCCcore/11.3.0 pixman/0.40.0
0.40.0
GCCcore/11.2.0 pixman/0.40.0
0.40.0
GCCcore/10.3.0 pixman/0.40.0

pkg-config

pkg-config is a helper tool used when compiling applications and libraries. It helps you insert the correct compiler options on the command line so an application can use gcc -o test test.c `pkg-config --libs --cflags glib-2.0` for instance, rather than hard-coding values on where to find glib (or other libraries).

Versions Environment loading command (via Lmod)
0.29.2
pkg-config/0.29.2
0.29.2
GCCcore/11.3.0 pkg-config/0.29.2
0.29.2
GCCcore/11.2.0 pkg-config/0.29.2
0.29.2
GCCcore/10.3.0 pkg-config/0.29.2

pkgconf

pkgconf is a program which helps to configure compiler and linker flags for development libraries. It is similar to pkg-config from freedesktop.org.

Versions Environment loading command (via Lmod)
2.4.3
GCCcore/14.3.0 pkgconf/2.4.3
2.3.0
GCCcore/14.2.0 pkgconf/2.3.0
2.2.0
GCCcore/13.3.0 pkgconf/2.2.0
2.0.3
GCCcore/13.2.0 pkgconf/2.0.3
1.9.5
GCCcore/12.3.0 pkgconf/1.9.5
1.9.3
GCCcore/12.2.0 pkgconf/1.9.3
1.8.0
pkgconf/1.8.0
1.8.0
GCCcore/11.3.0 pkgconf/1.8.0
1.8.0
GCCcore/11.2.0 pkgconf/1.8.0

pkgconfig

pkgconfig is a Python module to interface with the pkg-config command line tool

Versions Environment loading command (via Lmod)
1.5.5-python
GCCcore/11.3.0 pkgconfig/1.5.5-python
1.5.5-python
GCCcore/11.2.0 pkgconfig/1.5.5-python
1.5.4-python
GCCcore/10.3.0 pkgconfig/1.5.4-python

pocl

PoCL is a portable open source (MIT-licensed) implementation of the OpenCL standard (1.2 with some 2.0 features supported).

Versions Environment loading command (via Lmod)
6.0
GCC/13.2.0 pocl/6.0
1.8
GCC/11.3.0 pocl/1.8

poetry

Python packaging and dependency management made easy. Poetry helps you declare, manage and install dependencies of Python projects, ensuring you have the right stack everywhere.

Versions Environment loading command (via Lmod)
2.1.3
GCCcore/14.3.0 poetry/2.1.3
2.1.2
GCCcore/14.2.0 poetry/2.1.2
1.6.1
GCCcore/13.2.0 poetry/1.6.1
1.5.1
GCCcore/12.3.0 poetry/1.5.1

poppler

Poppler is a PDF rendering library

Versions Environment loading command (via Lmod)
24.04.0
GCC/13.2.0 poppler/24.04.0

pro-viz

pro-viz env setter

Versions Environment loading command (via Lmod)
1.10.1
pro-viz/1.10.1
1.10.0
pro-viz/1.10.0
1.9.4
pro-viz/1.9.4
1.9.3
pro-viz/1.9.3
1.9.2
pro-viz/1.9.2

protobuf

Google Protocol Buffers

Versions Environment loading command (via Lmod)
3.19.4
GCCcore/11.3.0 protobuf/3.19.4
3.17.3
GCCcore/11.2.0 protobuf/3.17.3
3.17.3
GCCcore/10.3.0 protobuf/3.17.3

protobuf-python

Python Protocol Buffers runtime library.

Versions Environment loading command (via Lmod)
3.19.4
GCCcore/11.3.0 protobuf-python/3.19.4
3.17.3
GCCcore/11.2.0 protobuf-python/3.17.3
3.17.3
GCCcore/10.3.0 protobuf-python/3.17.3

psycopg

Psycopg is the most popular PostgreSQL adapter for the Python programming language.

Versions Environment loading command (via Lmod)
3.1.18
GCCcore/13.2.0 psycopg/3.1.18

pybind11

pybind11 is a lightweight header-only library that exposes C++ types in Python and vice versa, mainly to create Python bindings of existing C++ code.

Versions Environment loading command (via Lmod)
2.13.6
GCC/14.2.0 pybind11/2.13.6
2.11.1
GCCcore/12.3.0 pybind11/2.11.1
2.10.3
GCCcore/12.2.0 pybind11/2.10.3
2.9.2
GCCcore/11.3.0 pybind11/2.9.2
2.7.1
GCCcore/11.2.0 pybind11/2.7.1
2.6.2
GCCcore/10.3.0 pybind11/2.6.2

pydicom

Pure python package for DICOM medical file reading and writing.

Versions Environment loading command (via Lmod)
2.2.2
GCCcore/10.3.0 pydicom/2.2.2

pytest-rerunfailures

pytest plugin to re-run tests to eliminate flaky failures.

Versions Environment loading command (via Lmod)
11.1
GCCcore/11.3.0 pytest-rerunfailures/11.1

pytest-shard

pytest plugin to support parallelism across multiple machines. Shards tests based on a hash of their test name enabling easy parallelism across machines, suitable for a wide variety of continuous integration services. Tests are split at the finest level of granularity, individual test cases, enabling parallelism even if all of your tests are in a single file (or even single parameterized test method).

Versions Environment loading command (via Lmod)
0.1.2
GCCcore/11.3.0 pytest-shard/0.1.2

python-mujoco

This package is the canonical Python bindings for the MuJoCo physics engine. The mujoco package provides direct access to raw MuJoCo C API functions, structs, constants, and enumerations. Structs are provided as Python classes, with Pythonic initialization and deletion semantics.

Versions Environment loading command (via Lmod)
2.2.2
GCC/11.3.0 OpenMPI/4.1.4 python-mujoco/2.2.2

qdp-jit

QDP-JIT

Versions Environment loading command (via Lmod)
82973e9-CUDA-12.4.0
GCC/13.2.0 OpenMPI/4.1.6 qdp-jit/82973e9-CUDA-12.4.0

qmp

QMP implementation over MPICH and single node

Versions Environment loading command (via Lmod)
3010fef-CUDA-12.4.0
GCC/13.2.0 OpenMPI/4.1.6 qmp/3010fef-CUDA-12.4.0

quda

QUDA is a library for performing calculations in lattice QCD on graphics processing units (GPUs), leveraging NVIDIA's CUDA platform.

Versions Environment loading command (via Lmod)
1.1.0-e23cd7e-CUDA-12.4.0
GCC/13.2.0 OpenMPI/4.1.6 quda/1.1.0-e23cd7e-CUDA-12.4.0

rclone

Rclone is a command line program to sync files and directories to and from a variety of online storage services

Versions Environment loading command (via Lmod)
1.67.0
rclone/1.67.0
1.60.1
rclone/1.60.1

re2c

re2c is a free and open-source lexer generator for C and C++. Its main goal is generating fast lexers: at least as fast as their reasonably optimized hand-coded counterparts. Instead of using traditional table-driven approach, re2c encodes the generated finite state automata directly in the form of conditional jumps and comparisons.

Versions Environment loading command (via Lmod)
3.1
GCCcore/13.2.0 re2c/3.1
3.1
GCCcore/12.3.0 re2c/3.1
2.2
GCCcore/11.3.0 re2c/2.2

s3cmd

Amazon S3 Tools: Command Line S3 Client Software and S3 Backup.

Versions Environment loading command (via Lmod)
2.3.0
s3cmd/2.3.0

scikit-build

Scikit-Build, or skbuild, is an improved build system generator for CPython C/C++/Fortran/Cython extensions.

Versions Environment loading command (via Lmod)
0.18.1
GCCcore/14.3.0 scikit-build/0.18.1
0.18.1
GCCcore/14.2.0 scikit-build/0.18.1
0.17.6
GCCcore/13.2.0 scikit-build/0.17.6
0.17.6
GCCcore/12.3.0 scikit-build/0.17.6

scikit-build-core

Scikit-build-core is a complete ground-up rewrite of scikit-build on top of modern packaging APIs. It provides a bridge between CMake and the Python build system, allowing you to make Python modules with CMake.

Versions Environment loading command (via Lmod)
0.11.5
GCCcore/14.3.0 scikit-build-core/0.11.5
0.11.1
GCCcore/14.2.0 scikit-build-core/0.11.1

scikit-image

scikit-image is a collection of algorithms for image processing.

Versions Environment loading command (via Lmod)
0.18.3
GCC/10.3.0 OpenMPI/4.1.1 scikit-image/0.18.3

scikit-learn

Scikit-learn integrates machine learning algorithms in the tightly-knit scientific Python world, building upon numpy, scipy, and matplotlib. As a machine-learning module, it provides versatile tools for data mining and analysis in any field of science and engineering. It strives to be simple and efficient, accessible to everybody, and reusable in various contexts.

Versions Environment loading command (via Lmod)
1.4.2
GCC/12.3.0 scikit-learn/1.4.2
0.24.2
GCC/10.3.0 OpenMPI/4.1.1 scikit-learn/0.24.2

setuptools-rust

setuptools-rust is a plugin for setuptools to build Rust Python extensions implemented with PyO3 or rust-cpython.

Versions Environment loading command (via Lmod)
1.11.0
GCCcore/14.3.0 setuptools-rust/1.11.0
1.11.0
GCCcore/14.2.0 setuptools-rust/1.11.0
1.8.0
GCCcore/13.2.0 setuptools-rust/1.8.0
1.6.0
GCCcore/12.3.0 setuptools-rust/1.6.0

snappy

Snappy is a compression/decompression library. It does not aim for maximum compression, or compatibility with any other compression library; instead, it aims for very high speeds and reasonable compression.

Versions Environment loading command (via Lmod)
1.2.2
GCCcore/14.2.0 snappy/1.2.2
1.1.10
GCCcore/13.2.0 snappy/1.1.10
1.1.10
GCCcore/12.3.0 snappy/1.1.10
1.1.9
GCCcore/11.3.0 snappy/1.1.9
1.1.9
GCCcore/11.2.0 snappy/1.1.9
1.1.8
GCCcore/10.3.0 snappy/1.1.8

sonic

Sonic is a simple algorithm for speeding up or slowing down speech. However, it's optimized for speed ups of over 2X, unlike previous algorithms for changing speech rate. The Sonic library is a very simple ANSI C library that is designed to easily be integrated into streaming voice applications, like TTS back ends.

Versions Environment loading command (via Lmod)
20180202
GCC/12.3.0 sonic/20180202

spglib

Spglib is a C library for finding and handling crystal symmetries.

Versions Environment loading command (via Lmod)
2.0.2
GCCcore/11.3.0 spglib/2.0.2

spglib-python

Spglib for Python. Spglib is a library for finding and handling crystal symmetries written in C.

Versions Environment loading command (via Lmod)
1.16.1
GCC/10.3.0 OpenMPI/4.1.1 spglib-python/1.16.1

spin

Developer tool for scientific Python libraries

Versions Environment loading command (via Lmod)
0.14
GCCcore/14.2.0 spin/0.14

tbb

Intel(R) Threading Building Blocks (Intel(R) TBB) lets you easily write parallel C++ programs that take full advantage of multicore performance, that are portable, composable and have future-proof scalability.

Versions Environment loading command (via Lmod)
2021.13.0
GCCcore/13.2.0 tbb/2021.13.0
2020.3
GCCcore/11.2.0 tbb/2020.3

tcsh

Tcsh is an enhanced, but completely compatible version of the Berkeley UNIX C shell (csh). It is a command language interpreter usable both as an interactive login shell and a shell script command processor. It includes a command-line editor, programmable word completion, spelling correction, a history mechanism, job control and a C-like syntax.

Versions Environment loading command (via Lmod)
6.24.01
GCCcore/11.3.0 tcsh/6.24.01
6.24.01
GCCcore/11.2.0 tcsh/6.24.01

tensorboard

TensorBoard is a suite of web applications for inspecting and understanding your TensorFlow runs and graphs.

Versions Environment loading command (via Lmod)
2.8.0
GCC/10.3.0 OpenMPI/4.1.1 tensorboard/2.8.0

tesseract

Tesseract is an optical character recognition engine

Versions Environment loading command (via Lmod)
5.5.0
GCCcore/13.3.0 tesseract/5.5.0
5.5.0
GCCcore/13.2.0 tesseract/5.5.0
5.4.1
GCCcore/10.3.0 tesseract/5.4.1

tornado

Tornado is a Python web framework and asynchronous networking library.

Versions Environment loading command (via Lmod)
6.5.1
GCCcore/14.3.0 tornado/6.5.1
6.5.1
GCCcore/14.2.0 tornado/6.5.1
6.4
GCCcore/13.2.0 tornado/6.4
6.3.2
GCCcore/12.3.0 tornado/6.3.2

tqdm

A fast, extensible progress bar for Python and CLI

Versions Environment loading command (via Lmod)
4.66.1
GCCcore/12.3.0 tqdm/4.66.1
4.61.2
GCCcore/10.3.0 tqdm/4.61.2

typing-extensions

Typing Extensions - Backported and Experimental Type Hints for Python

Versions Environment loading command (via Lmod)
4.14.1
GCCcore/14.3.0 typing-extensions/4.14.1
4.10.0
GCCcore/13.2.0 typing-extensions/4.10.0
4.9.0
GCCcore/12.3.0 typing-extensions/4.9.0
4.4.0
GCCcore/10.3.0 typing-extensions/4.4.0
3.10.0.0
GCCcore/10.3.0 typing-extensions/3.10.0.0

umpire

Umpire is a resource management library that allows the discovery, provision, and management of memory on machines with multiple memory devices like NUMA and GPUs.

Versions Environment loading command (via Lmod)
2024.02.0-CUDA-11.7.0
GCC/11.3.0 OpenMPI/4.1.4 umpire/2024.02.0-CUDA-11.7.0

utf8proc

utf8proc is a small, clean C library that provides Unicode normalization, case-folding, and other operations for data in the UTF-8 encoding.

Versions Environment loading command (via Lmod)
2.9.0
GCCcore/14.2.0 utf8proc/2.9.0
2.8.0
GCCcore/12.3.0 utf8proc/2.8.0

util-linux

Set of Linux utilities

Versions Environment loading command (via Lmod)
2.41
GCCcore/14.3.0 util-linux/2.41
2.41
GCCcore/14.2.0 util-linux/2.41
2.40
util-linux/2.40
2.40
GCCcore/13.3.0 util-linux/2.40
2.39
GCCcore/13.2.0 util-linux/2.39
2.39
GCCcore/12.3.0 util-linux/2.39
2.38
util-linux/2.38
2.38
GCCcore/11.3.0 util-linux/2.38
2.37
GCCcore/11.2.0 util-linux/2.37
2.36
GCCcore/10.3.0 util-linux/2.36

vermouth-martinize

Martinize2 and vermouth: The ultimate resolution transformation tools Martinize2 is aimed at producing coarse-grained structures and topologies from an atomistic structure. Martinize is primarily developed for the Martini coarse-grained force field and the Gromacs simulation engine. Vermouth (for VERsatile, MOdular, and Universal Tranformation Helper) is the python library that powers Martinize2. It allows to describe and apply transformation on molecular structures and topologies using graph algorithms.

Versions Environment loading command (via Lmod)
0.13.0-Python-3.11.3
GCC/12.3.0 OpenMPI/4.1.5 vermouth-martinize/0.13.0-Python-3.11.3

virtualenv

A tool for creating isolated virtual python environments.

Versions Environment loading command (via Lmod)
20.32.0
GCCcore/14.3.0 virtualenv/20.32.0
20.29.2
GCCcore/14.2.0 virtualenv/20.29.2
20.24.6
GCCcore/13.2.0 virtualenv/20.24.6
20.23.1
GCCcore/12.3.0 virtualenv/20.23.1

x264

x264 is a free software library and application for encoding video streams into the H.264/MPEG-4 AVC compression format, and is released under the terms of the GNU GPL.

Versions Environment loading command (via Lmod)
20231019
GCCcore/13.2.0 x264/20231019
20230226
GCCcore/12.3.0 x264/20230226
20220620
GCCcore/11.3.0 x264/20220620
20210414
GCCcore/10.3.0 x264/20210414

x265

x265 is a free software library and application for encoding video streams into the H.265 AVC compression format, and is released under the terms of the GNU GPL.

Versions Environment loading command (via Lmod)
3.5
GCCcore/13.2.0 x265/3.5
3.5
GCCcore/12.3.0 x265/3.5
3.5
GCCcore/11.3.0 x265/3.5
3.5
GCCcore/10.3.0 x265/3.5

xorg-macros

X.org macros utilities.

Versions Environment loading command (via Lmod)
1.20.2
GCCcore/14.2.0 xorg-macros/1.20.2
1.20.1
GCCcore/13.3.0 xorg-macros/1.20.1
1.20.0
GCCcore/13.2.0 xorg-macros/1.20.0
1.20.0
GCCcore/12.3.0 xorg-macros/1.20.0
1.19.3
xorg-macros/1.19.3
1.19.3
GCCcore/12.2.0 xorg-macros/1.19.3
1.19.3
GCCcore/11.3.0 xorg-macros/1.19.3
1.19.3
GCCcore/11.2.0 xorg-macros/1.19.3
1.19.3
GCCcore/10.3.0 xorg-macros/1.19.3

xprop

The xprop utility is for displaying window and font properties in an X server. One window or font is selected using the command line arguments or possibly in the case of a window, by clicking on the desired window. A list of properties is then given, possibly with formatting information.

Versions Environment loading command (via Lmod)
1.2.7
GCCcore/13.2.0 xprop/1.2.7
1.2.5
GCCcore/11.3.0 xprop/1.2.5

yaml-cpp

yaml-cpp is a YAML parser and emitter in C++ matching the YAML 1.2 spec.

Versions Environment loading command (via Lmod)
0.6.3
GCC/12.3.0 OpenMPI/4.1.5 yaml-cpp/0.6.3

zlib

zlib is designed to be a free, general-purpose, legally unencumbered -- that is, not covered by any patents -- lossless data-compression library for use on virtually any computer hardware and operating system.

Versions Environment loading command (via Lmod)
1.3.1
zlib/1.3.1
1.3.1
GCCcore/14.3.0 zlib/1.3.1
1.3.1
GCCcore/14.2.0 zlib/1.3.1
1.3.1
GCCcore/13.3.0 zlib/1.3.1
1.2.13
zlib/1.2.13
1.2.13
GCCcore/13.2.0 zlib/1.2.13
1.2.13
GCCcore/12.3.0 zlib/1.2.13
1.2.12
zlib/1.2.12
1.2.12
GCCcore/12.2.0 zlib/1.2.12
1.2.12
GCCcore/11.3.0 zlib/1.2.12
1.2.11
zlib/1.2.11
1.2.11
GCCcore/11.2.0 zlib/1.2.11
1.2.11
GCCcore/10.3.0 zlib/1.2.11

zsh

Zsh is a shell designed for interactive use, although it is also a powerful scripting language.

Versions Environment loading command (via Lmod)
5.9
zsh/5.9

zstd

Zstandard is a real-time compression algorithm, providing high compression ratios. It offers a very wide range of compression/speed trade-off, while being backed by a very fast decoder. It also offers a special mode for small data, called dictionary compression, and can create dictionaries from any sample set.

Versions Environment loading command (via Lmod)
1.5.7
GCCcore/14.3.0 zstd/1.5.7
1.5.6
GCCcore/14.2.0 zstd/1.5.6
1.5.6
GCCcore/13.3.0 zstd/1.5.6
1.5.5
GCCcore/13.2.0 zstd/1.5.5
1.5.5
GCCcore/12.3.0 zstd/1.5.5
1.5.2
zstd/1.5.2
1.5.2
GCCcore/11.3.0 zstd/1.5.2
1.5.0
zstd/1.5.0
1.5.0
GCCcore/11.2.0 zstd/1.5.0
1.4.9
GCCcore/10.3.0 zstd/1.4.9

Ostatnia aktualizacja: 13 listopada 2025