Athena
W niektórych przypadkach oprogramowanie z poniższej listy może wymagać posiadania dodatkowej licencji i może nie być ogólnodostępne dla wszystkich użytkowników PLGrid.
ACTC
ACTC converts independent triangles into triangle strips or fans.
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| 1.1 |
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AOCL-BLAS
AOCL-BLAS is AMD's optimized version of BLAS targeted for AMD EPYC and Ryzen CPUs.
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| 5.0 |
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ASE
ASE is a python package providing an open source Atomic Simulation Environment in the Python scripting language. From version 3.20.1 we also include the ase-ext package, it contains optional reimplementations in C of functions in ASE. ASE uses it automatically when installed.
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| 3.22.0 |
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ATK
ATK provides the set of accessibility interfaces that are implemented by other toolkits and applications. Using the ATK interfaces, accessibility tools have full access to view and control running applications.
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| 2.38.0 |
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| 2.38.0 |
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| 2.36.0 |
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| 2.36.0 |
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Abseil
Abseil is an open-source collection of C++ library code designed to augment the C++ standard library. The Abseil library code is collected from Google's own C++ code base, has been extensively tested and used in production, and is the same code we depend on in our daily coding lives.
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| 20250512.1 |
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| 20230125.3 |
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| 20230125.2 |
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AlphaFold
AlphaFold2
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| 3.0.1 |
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| 3.0.0 |
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| 2.3.2 |
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| 2.3.1 |
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Amber
Amber (originally Assisted Model Building with Energy Refinement) is software for performing molecular dynamics and structure prediction.
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| 24.3-AmberTools-24.6 |
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| 22.5-AmberTools-23.6-CUDA-12.1.1.0 |
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| 22.0-AmberTools-22.3-CUDA-11.6.0 |
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Armadillo
Armadillo is an open-source C++ linear algebra library (matrix maths) aiming towards a good balance between speed and ease of use. Integer, floating point and complex numbers are supported, as well as a subset of trigonometric and statistics functions.
| Versions | Environment loading command (via Lmod) |
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| 12.6.2 |
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Arrow
Apache Arrow (incl. PyArrow Python bindings), a cross-language development platform for in-memory data.
| Versions | Environment loading command (via Lmod) |
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| 21.0.0 |
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| 17.0.0 |
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Autoconf
Autoconf is an extensible package of M4 macros that produce shell scripts to automatically configure software source code packages. These scripts can adapt the packages to many kinds of UNIX-like systems without manual user intervention. Autoconf creates a configuration script for a package from a template file that lists the operating system features that the package can use, in the form of M4 macro calls.
| Versions | Environment loading command (via Lmod) |
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| 2.72 |
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| 2.72 |
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| 2.72 |
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| 2.71 |
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| 2.71 |
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| 2.71 |
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| 2.71 |
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| 2.71 |
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| 2.71 |
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| 2.71 |
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| 2.69 |
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Automake
Automake: GNU Standards-compliant Makefile generator
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| 1.18 |
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| 1.17 |
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| 1.16.5 |
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| 1.16.5 |
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| 1.16.5 |
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| 1.16.5 |
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| 1.16.5 |
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| 1.16.5 |
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| 1.16.4 |
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| 1.16.3 |
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| 1.15.1 |
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Autotools
This bundle collect the standard GNU build tools: Autoconf, Automake and libtool
| Versions | Environment loading command (via Lmod) |
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| 20250527 |
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| 20240712 |
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| 20231222 |
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| 20220317 |
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| 20220317 |
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| 20220317 |
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| 20220317 |
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| 20220317 |
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| 20210726 |
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| 20210128 |
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BEEF
BEEF is a library-based implementation of the Bayesian Error Estimation Functional, suitable for linking against by Fortran- or C-based DFT codes. A description of BEEF can be found at http://dx.doi.org/10.1103/PhysRevB.85.235149.
| Versions | Environment loading command (via Lmod) |
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| 0.1.1 |
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BLIS
BLIS is a portable software framework for instantiating high-performance BLAS-like dense linear algebra libraries.
| Versions | Environment loading command (via Lmod) |
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| 1.1 |
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| 0.9.0 |
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| 0.9.0 |
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| 0.9.0 |
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| 0.9.0 |
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| 0.8.1 |
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| 0.8.1 |
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Bazel
Bazel is a build tool that builds code quickly and reliably. It is used to build the majority of Google's software.
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| 6.3.1 |
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| 5.1.1 |
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| 5.1.1 |
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| 4.2.2 |
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| 3.7.2 |
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| 3.7.2 |
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BeautifulSoup
Beautiful Soup is a Python library designed for quick turnaround projects like screen-scraping.
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| 4.14.2 |
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| 4.12.2 |
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| 4.12.2 |
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| 4.10.0 |
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Bison
Bison is a general-purpose parser generator that converts an annotated context-free grammar into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.
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| 3.8.2 |
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| 3.8.2 |
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| 3.8.2 |
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| 3.8.2 |
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| 3.8.2 |
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| 3.8.2 |
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| 3.8.2 |
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| 3.8.2 |
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| 3.7.6 |
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| 3.7.6 |
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Blender
Blender is the free and open source 3D creation suite. It supports the entirety of the 3D pipeline-modeling, rigging, animation, simulation, rendering, compositing and motion tracking, even video editing and game creation.
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| 3.5.0-linux-x86_64-CUDA-11.7.0 |
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| 3.3.2-linux-x86_64-CUDA-11.7.0 |
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Blitz++
Blitz++ is a (LGPLv3+) licensed meta-template library for array manipulation in C++ with a speed comparable to Fortran implementations, while preserving an object-oriented interface
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| 1.0.2 |
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Boost
Boost provides free peer-reviewed portable C++ source libraries.
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| 1.88.0 |
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| 1.85.0 |
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| 1.83.0 |
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| 1.82.0 |
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| 1.79.0 |
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| 1.77.0 |
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Boost.MPI
Boost provides free peer-reviewed portable C++ source libraries.
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| 1.79.0-mpi-thread-multiple |
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Brotli
Brotli is a generic-purpose lossless compression algorithm that compresses data using a combination of a modern variant of the LZ77 algorithm, Huffman coding and 2nd order context modeling, with a compression ratio comparable to the best currently available general-purpose compression methods. It is similar in speed with deflate but offers more dense compression. The specification of the Brotli Compressed Data Format is defined in RFC 7932.
| Versions | Environment loading command (via Lmod) |
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| 1.1.0 |
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| 1.1.0 |
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| 1.1.0 |
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| 1.0.9 |
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| 1.0.9 |
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| 1.0.9 |
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| 1.0.9 |
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| 1.0.9 |
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Brunsli
Brunsli is a lossless JPEG repacking library.
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| 0.1 |
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CFITSIO
CFITSIO is a library of C and Fortran subroutines for reading and writing data files in FITS (Flexible Image Transport System) data format.
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| 4.3.0 |
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CGAL
The goal of the CGAL Open Source Project is to provide easy access to efficient and reliable geometric algorithms in the form of a C++ library.
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| 5.6 |
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| 4.14.3 |
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CMake
CMake, the cross-platform, open-source build system. CMake is a family of tools designed to build, test and package software.
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| 4.0.3 |
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| 3.31.3 |
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| 3.29.3 |
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| 3.27.6 |
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| 3.26.3 |
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| 3.24.3 |
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| 3.24.3 |
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| 3.23.1 |
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| 3.23.1 |
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| 3.22.1 |
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| 3.21.1 |
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| 3.21.1 |
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| 3.20.1 |
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COSTA
COSTA is a communication-optimal, highly-optimised algorithm for data redistribution accross multiple processors, using MPI and OpenMP and offering the possibility to transpose and scale some or all data.
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| 2.2.2 |
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CP2K
CP2K is a freely available (GPL) program, written in Fortran 95, to perform atomistic and molecular simulations of solid state, liquid, molecular and biological systems. It provides a general framework for different methods such as e.g. density functional theory (DFT) using a mixed Gaussian and plane waves approach (GPW), and classical pair and many-body potentials.
| Versions | Environment loading command (via Lmod) |
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| 2022.2 |
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| 9.1-CUDA-11.6.0-noplumed |
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CUDA
CUDA (formerly Compute Unified Device Architecture) is a parallel computing platform and programming model created by NVIDIA and implemented by the graphics processing units (GPUs) that they produce. CUDA gives developers access to the virtual instruction set and memory of the parallel computational elements in CUDA GPUs.
| Versions | Environment loading command (via Lmod) |
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| 12.8.0 |
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| 12.4.0 |
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| 12.3.0 |
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| 12.2.0 |
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| 12.1.1 |
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| 12.0.0 |
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| 11.8.0 |
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| 11.7.0 |
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| 11.6.0 |
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| 11.4.1 |
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| 11.3.1 |
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| 10.0.130 |
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CUTLASS
CUTLASS is a collection of CUDA C++ template abstractions for implementing high-performance matrix-matrix multiplication (GEMM) and related computations at all levels and scales within CUDA. It incorporates strategies for hierarchical decomposition and data movement similar to those used to implement cuBLAS and cuDNN. CUTLASS decomposes these "moving parts" into reusable, modular software components abstracted by C++ template classes. Primitives for different levels of a conceptual parallelization hierarchy can be specialized and tuned via custom tiling sizes, data types, and other algorithmic policy. The resulting flexibility simplifies their use as building blocks within custom kernels and applications.
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| 3.6.0-CUDA-12.4.0 |
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| 3.4.0-CUDA-12.1.1 |
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Catch2
A modern, C++-native, header-only, test framework for unit-tests, TDD and BDD - using C++11, C++14, C++17 and later
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| 2.13.10 |
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| 2.13.9 |
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Clang
C, C++, Objective-C compiler, based on LLVM. Does not include C++ standard library -- use libstdc++ from GCC.
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| 17.0.6-CUDA-12.4.0 |
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| 16.0.6 |
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| 13.0.1-CUDA-11.4.1 |
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| 13.0.1 |
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CppUnit
CppUnit is the C++ port of the famous JUnit framework for unit testing.
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| 1.15.1 |
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CuPy
CuPy is an open-source array library accelerated with NVIDIA CUDA.
| Versions | Environment loading command (via Lmod) |
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| 12.1.0-CUDA-12.0.0 |
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Cython
Cython is an optimising static compiler for both the Python programming language and the extended Cython programming language (based on Pyrex).
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| 3.1.2 |
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| 3.1.1 |
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| 3.0.8 |
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DB
Berkeley DB enables the development of custom data management solutions, without the overhead traditionally associated with such custom projects.
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| 18.1.40 |
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| 18.1.40 |
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| 18.1.40 |
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| 18.1.40 |
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| 18.1.40 |
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DBus
D-Bus is a message bus system, a simple way for applications to talk to one another. In addition to interprocess communication, D-Bus helps coordinate process lifecycle; it makes it simple and reliable to code a "single instance" application or daemon, and to launch applications and daemons on demand when their services are needed.
| Versions | Environment loading command (via Lmod) |
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| 1.15.8 |
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| 1.15.4 |
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| 1.14.0 |
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| 1.13.18 |
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| 1.13.18 |
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DFTB+
DFTB+ is a fast and efficient versatile quantum mechanical simulation package. It is based on the Density Functional Tight Binding (DFTB) method, containing almost all of the useful extensions which have been developed for the DFTB framework so far. Using DFTB+ you can carry out quantum mechanical simulations like with ab-initio density functional theory based packages, but in an approximate way gaining typically around two order of magnitude in speed.
| Versions | Environment loading command (via Lmod) |
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| 24.1-CUDA-11.7.0 |
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Doxygen
Doxygen is a documentation system for C++, C, Java, Objective-C, Python, IDL (Corba and Microsoft flavors), Fortran, VHDL, PHP, C#, and to some extent D.
| Versions | Environment loading command (via Lmod) |
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| 1.14.0 |
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| 1.11.0 |
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| 1.9.8 |
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| 1.9.7 |
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| 1.9.4 |
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| 1.9.1 |
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ELPA
Eigenvalue SoLvers for Petaflop-Applications.
| Versions | Environment loading command (via Lmod) |
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| 2022.05.001-CUDA-11.7.0-silent |
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| 2022.05.001-CUDA-11.7.0 |
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| 2021.11.001-CUDA-11.6.0 |
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ELSI
ELSI provides and enhances scalable, open-source software library solutions for electronic structure calculations in materials science, condensed matter physics, chemistry, and many other fields. ELSI focuses on methods that solve or circumvent eigenvalue problems in electronic structure theory. The ELSI infrastructure should also be useful for other challenging eigenvalue problems.
| Versions | Environment loading command (via Lmod) |
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| 2.7.1-CUDA-11.7.0-silent |
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| 2.7.1-CUDA-11.7.0 |
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| 2.7.1-CUDA-11.6.0 |
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ESMFold
Evolutionary Scale Modeling
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| 2.0.1 |
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EXP-T
The EXP-T program package is designed for high-precision modeling of molecular electronic structure using the relativistic Fock space multireference coupled cluster method (FS-RCC).
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| e3753ab-CUDA-12.4.0 |
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Eigen
Eigen is a C++ template library for linear algebra: matrices, vectors, numerical solvers, and related algorithms.
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| 3.4.0 |
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| 3.4.0 |
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| 3.4.0 |
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| 3.4.0 |
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| 3.4.0 |
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| 3.3.9 |
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| 3.3.9 |
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Emacs
GNU Emacs is an extensible, customizable text editor--and more. At its core is an interpreter for Emacs Lisp, a dialect of the Lisp programming language with extensions to support text editing.
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| 29.1 |
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ErlangOTP
Erlang is a general-purpose concurrent, garbage-collected programming language and runtime system.
| Versions | Environment loading command (via Lmod) |
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| 27.3.3 |
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| 27.1.2 |
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| 26.2.5.11 |
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| 26.2.5.4 |
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EternaFold
EternaFold performs multitask learning to improve RNA structure prediction. Its training tasks include 1) predicting single structures, 2) maximizing the likelihood of structure probing data, 3) predicting experimentally-measured affinities of RNA molecules to proteins and small molecules.
| Versions | Environment loading command (via Lmod) |
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| 1.3.1 |
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FFTW
FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data.
| Versions | Environment loading command (via Lmod) |
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| 3.3.10 |
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| 3.3.10 |
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| 3.3.10 |
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| 3.3.10 |
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| 3.3.10 |
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| 3.3.10 |
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| 3.3.10 |
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| 3.3.10 |
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| 3.3.10 |
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| 3.3.10 |
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| 3.3.9 |
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FFTW.MPI
FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data.
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| 3.3.10 |
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| 3.3.10 |
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| 3.3.10 |
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| 3.3.10 |
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| 3.3.10 |
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FFmpeg
A complete, cross-platform solution to record, convert and stream audio and video.
| Versions | Environment loading command (via Lmod) |
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| 6.0 |
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| 6.0 |
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| 4.4.2 |
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| 4.3.2 |
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FLAC
FLAC stands for Free Lossless Audio Codec, an audio format similar to MP3, but lossless, meaning that audio is compressed in FLAC without any loss in quality.
| Versions | Environment loading command (via Lmod) |
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| 1.4.2 |
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| 1.3.4 |
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FLAMEGPU2
FLAME GPU is a GPU accelerated agent-based simulation library for domain independent complex systems simulations
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2c565e2 |
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FLTK
FLTK is a cross-platform C++ GUI toolkit for UNIX/Linux (X11), Microsoft Windows, and MacOS X. FLTK provides modern GUI functionality without the bloat and supports 3D graphics via OpenGL and its built-in GLUT emulation.
| Versions | Environment loading command (via Lmod) |
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| 1.3.9 |
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| 1.3.8 |
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Flask
Flask is a lightweight WSGI web application framework. It is designed to make getting started quick and easy, with the ability to scale up to complex applications. This module includes the Flask extensions: Flask-Cors
| Versions | Environment loading command (via Lmod) |
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| 1.1.4 |
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FlexiBLAS
FlexiBLAS is a wrapper library that enables the exchange of the BLAS and LAPACK implementation used by a program without recompiling or relinking it.
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| 3.4.5 |
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| 3.3.1 |
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| 3.3.1 |
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| 3.3.1 |
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| 3.2.1 |
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| 3.2.0 |
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| 3.0.4 |
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| 3.0.4 |
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FriBidi
The Free Implementation of the Unicode Bidirectional Algorithm.
| Versions | Environment loading command (via Lmod) |
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| 1.0.15 |
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| 1.0.13 |
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| 1.0.12 |
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| 1.0.12 |
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| 1.0.10 |
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| 1.0.10 |
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GCC
The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).
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| 14.2.0 |
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| 13.2.0 |
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| 12.3.0 |
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| 12.2.0 |
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| 11.3.0 |
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| 11.2.0 |
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| 10.3.0 |
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GCCcore
The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).
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| 14.3.0 |
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| 14.2.0 |
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| 13.3.0 |
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| 13.2.0 |
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| 12.3.0 |
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| 12.2.0 |
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| 11.3.0 |
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| 11.2.0 |
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| 10.3.0 |
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GDAL
GDAL is a translator library for raster geospatial data formats that is released under an X/MIT style Open Source license by the Open Source Geospatial Foundation. As a library, it presents a single abstract data model to the calling application for all supported formats. It also comes with a variety of useful commandline utilities for data translation and processing.
| Versions | Environment loading command (via Lmod) |
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| 3.7.1 |
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| 3.5.0 |
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GDB
The GNU Project Debugger
| Versions | Environment loading command (via Lmod) |
|---|---|
| 13.2 |
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| 13.2 |
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GDRCopy
A low-latency GPU memory copy library based on NVIDIA GPUDirect RDMA technology.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.4.4 |
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| 2.4 |
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| 2.3.1 |
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| 2.3 |
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| 2.3 |
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| 2.3 |
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| 2.2 |
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GEOS
GEOS (Geometry Engine - Open Source) is a C++ port of the Java Topology Suite (JTS)
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| 3.12.0 |
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| 3.10.3 |
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GLFW
GLFW is an Open Source, multi-platform library for OpenGL, OpenGL ES and Vulkan development on the desktop
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| 3.3.8 |
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GLM
OpenGL Mathematics (GLM) is a header only C++ mathematics library for graphics software based on the OpenGL Shading Language (GLSL) specifications.
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| 0.9.9.8 |
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GLPK
The GLPK (GNU Linear Programming Kit) package is intended for solving large-scale linear programming (LP), mixed integer programming (MIP), and other related problems. It is a set of routines written in ANSI C and organized in the form of a callable library.
| Versions | Environment loading command (via Lmod) |
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| 5.0 |
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| 5.0 |
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GLib
GLib is one of the base libraries of the GTK+ project
| Versions | Environment loading command (via Lmod) |
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| 2.80.4 |
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| 2.78.1 |
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| 2.77.1 |
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| 2.72.1 |
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| 2.69.1 |
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| 2.68.2 |
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GMP
GMP is a free library for arbitrary precision arithmetic, operating on signed integers, rational numbers, and floating point numbers.
| Versions | Environment loading command (via Lmod) |
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| 6.3.0 |
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| 6.2.1 |
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| 6.2.1 |
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| 6.2.1 |
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| 6.2.1 |
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| 6.2.1 |
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| 6.2.1 |
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GObject-Introspection
GObject introspection is a middleware layer between C libraries (using GObject) and language bindings. The C library can be scanned at compile time and generate a metadata file, in addition to the actual native C library. Then at runtime, language bindings can read this metadata and automatically provide bindings to call into the C library.
| Versions | Environment loading command (via Lmod) |
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| 1.80.1 |
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| 1.78.1 |
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| 1.76.1 |
|
| 1.72.0 |
|
| 1.68.0 |
|
| 1.68.0 |
|
GPUMD
GPUMD stands for Graphics Processing Units Molecular Dynamics. It is a general-purpose molecular dynamics (MD) package fully implemented on graphics processing units (GPU). In addition to several empirical interatomic potentials, it supports neuroevolution potential (NEP) models. GPUMD also allows one to construct the latter type of models using the nep executable.
| Versions | Environment loading command (via Lmod) |
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| 3.9.1-CUDA-11.7.0 |
|
GROMACS
GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. This is a CPU only build, containing both MPI and threadMPI binaries for both single and double precision. It also contains the gmxapi extension for the single precision MPI build.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2024.4-CUDA-12.4.0 |
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| 2024.2-CUDA-12.1.1-SMP |
|
| 2023.5-CUDA-12.4.0 |
|
| 2023.5-CUDA-12.1.1 |
|
| 2023.4-CUDA-12.1.1 |
|
| 2023.3-CUDA-12.1.1 |
|
| 2023.2-CUDA-11.7.0-AVX2-256 |
|
| 2022.3-CUDA-11.6.0-AVX2-256 |
|
| 2022-CUDA-11.6.0-AVX2-256 |
|
GSL
The GNU Scientific Library (GSL) is a numerical library for C and C++ programmers. The library provides a wide range of mathematical routines such as random number generators, special functions and least-squares fitting.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.7 |
|
| 2.7 |
|
GST-plugins-bad
GStreamer is a library for constructing graphs of media-handling components. The applications it supports range from simple Ogg/Vorbis playback, audio/video streaming to complex audio (mixing) and video (non-linear editing) processing.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.20.2 |
|
GST-plugins-base
GStreamer is a library for constructing graphs of media-handling components. The applications it supports range from simple Ogg/Vorbis playback, audio/video streaming to complex audio (mixing) and video (non-linear editing) processing.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.20.2 |
|
GStreamer
GStreamer is a library for constructing graphs of media-handling components. The applications it supports range from simple Ogg/Vorbis playback, audio/video streaming to complex audio (mixing) and video (non-linear editing) processing.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.20.2 |
|
GTK2
The GTK+ 2 package contains libraries used for creating graphical user interfaces for applications.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.24.33 |
|
GTK3
GTK+ is the primary library used to construct user interfaces in GNOME. It provides all the user interface controls, or widgets, used in a common graphical application. Its object-oriented API allows you to construct user interfaces without dealing with the low-level details of drawing and device interaction.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.24.39 |
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| 3.24.33 |
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| 3.24.29 |
|
GTK4
GTK+ is the primary library used to construct user interfaces in GNOME. It provides all the user interface controls, or widgets, used in a common graphical application. Its object-oriented API allows you to construct user interfaces without dealing with the low-level details of drawing and device interaction.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.7.0 |
|
Gdk-Pixbuf
The Gdk Pixbuf is a toolkit for image loading and pixel buffer manipulation. It is used by GTK+ 2 and GTK+ 3 to load and manipulate images. In the past it was distributed as part of GTK+ 2 but it was split off into a separate package in preparation for the change to GTK+ 3.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.42.10 |
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| 2.42.8 |
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| 2.42.6 |
|
| 2.42.6 |
|
Ghostscript
Ghostscript is a versatile processor for PostScript data with the ability to render PostScript to different targets. It used to be part of the cups printing stack, but is no longer used for that.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 10.03.1 |
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| 10.02.1 |
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| 9.56.1 |
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| 9.54.0 |
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GitPython
GitPython is a python library used to interact with Git repositories
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.1.45 |
|
GnuTLS
GnuTLS is a secure communications library implementing the SSL, TLS and DTLS protocols and technologies around them. It provides a simple C language application programming interface (API) to access the secure communications protocols as well as APIs to parse and write X.509, PKCS #12, OpenPGP and other required structures. It is aimed to be portable and efficient with focus on security and interoperability.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.7.3 |
|
Go
Go is an open source programming language that makes it easy to build simple, reliable, and efficient software.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.22.4 |
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| 1.22.1 |
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| 1.20.4 |
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| 1.17.3 |
|
Graphene
Graphene is a thin layer of types for graphic libraries
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.10.8 |
|
Graphviz
Graphviz is open source graph visualization software. Graph visualization is a way of representing structural information as diagrams of abstract graphs and networks. It has important applications in networking, bioinformatics, software engineering, database and web design, machine learning, and in visual interfaces for other technical domains.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 13.1.2-minimal |
|
Greenlet
The greenlet package is a spin-off of Stackless, a version of CPython that supports micro-threads called "tasklets". Tasklets run pseudo-concurrently (typically in a single or a few OS-level threads) and are synchronized with data exchanges on "channels". A "greenlet", on the other hand, is a still more primitive notion of micro-thread with no implicit scheduling; coroutines, in other words. This is useful when you want to control exactly when your code runs.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.0.3 |
|
Guile
Guile is a programming language, designed to help programmers create flexible applications that can be extended by users or other programmers with plug-ins, modules, or scripts.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.0.7 |
|
HDF
HDF (also known as HDF4) is a library and multi-object file format for storing and managing data between machines.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.2.16-2 |
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| 4.2.15 |
|
HDF5
HDF5 is a data model, library, and file format for storing and managing data. It supports an unlimited variety of datatypes, and is designed for flexible and efficient I/O and for high volume and complex data.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.14.3 |
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| 1.14.0 |
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| 1.12.2-threadsafe |
|
| 1.12.2 |
|
| 1.12.2 |
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| 1.12.1 |
|
| 1.10.7 |
|
HH-suite
The HH-suite is an open-source software package for sensitive protein sequence searching based on the pairwise alignment of hidden Markov models (HMMs).
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.3.0 |
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| 3.3.0 |
|
HMMER
HMMER is used for searching sequence databases for homologs of protein sequences, and for making protein sequence alignments. It implements methods using probabilistic models called profile hidden Markov models (profile HMMs). Compared to BLAST, FASTA, and other sequence alignment and database search tools based on older scoring methodology, HMMER aims to be significantly more accurate and more able to detect remote homologs because of the strength of its underlying mathematical models. In the past, this strength came at significant computational expense, but in the new HMMER3 project, HMMER is now essentially as fast as BLAST.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.3.2 |
|
HTSlib
A C library for reading/writing high-throughput sequencing data. This package includes the utilities bgzip and tabix
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.14 |
|
HarfBuzz
HarfBuzz is an OpenType text shaping engine.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 9.0.0 |
|
| 8.2.2 |
|
| 5.3.1 |
|
| 4.2.1 |
|
| 2.8.2 |
|
| 2.8.1 |
|
Horovod
Horovod is a distributed training framework for TensorFlow.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.23.0-CUDA-11.3.1-PyTorch-1.10.0-TensorFlow-2.5.3 |
|
Hypre
Hypre is a library for solving large, sparse linear systems of equations on massively parallel computers. The problems of interest arise in the simulation codes being developed at LLNL and elsewhere to study physical phenomena in the defense, environmental, energy, and biological sciences.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.33.0 |
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| 2.29.0 |
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| 2.25.0 |
|
ICU
ICU is a mature, widely used set of C/C++ and Java libraries providing Unicode and Globalization support for software applications.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 77.1 |
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| 76.1 |
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| 75.1 |
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| 74.1 |
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| 73.2 |
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| 71.1 |
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| 69.1 |
|
| 69.1 |
|
IPython
IPython provides a rich architecture for interactive computing with: Powerful interactive shells (terminal and Qt-based). A browser-based notebook with support for code, text, mathematical expressions, inline plots and other rich media. Support for interactive data visualization and use of GUI toolkits. Flexible, embeddable interpreters to load into your own projects. Easy to use, high performance tools for parallel computing.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 9.4.0 |
|
| 8.17.2 |
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| 8.14.0 |
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| 8.5.0 |
|
| 7.25.0 |
|
ISA-L
Intelligent Storage Acceleration Library
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.30.0 |
|
ISL
isl is a library for manipulating sets and relations of integer points bounded by linear constraints.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.26 |
|
| 0.26 |
|
ImageMagick
ImageMagick is a software suite to create, edit, compose, or convert bitmap images
| Versions | Environment loading command (via Lmod) |
|---|---|
| 7.1.0-37 |
|
Imath
Imath is a C++ and python library of 2D and 3D vector, matrix, and math operations for computer graphics
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.1.7 |
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| 3.1.5 |
|
JasPer
The JasPer Project is an open-source initiative to provide a free software-based reference implementation of the codec specified in the JPEG-2000 Part-1 standard.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.0.0 |
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| 4.0.0 |
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| 2.0.33 |
|
| 2.0.28 |
|
Java
Java Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 21.0.7 |
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| 13.0.2 |
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| 11.0.2 |
|
JsonCpp
JsonCpp is a C++ library that allows manipulating JSON values, including serialization and deserialization to and from strings. It can also preserve existing comment in unserialization/serialization steps, making it a convenient format to store user input files.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.9.5 |
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| 1.9.4 |
|
| 1.9.4 |
|
Julia
Julia is a high-level, high-performance dynamic programming language for numerical computing
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.11.3-linux-x86_64 |
|
JupyterHub
JupyterHub is a multiuser version of the Jupyter (IPython) notebook designed for centralized deployments in companies, university classrooms and research labs.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.1.5 |
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| 4.0.2 |
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JupyterLab
JupyterLab is the next-generation user interface for Project Jupyter offering all the familiar building blocks of the classic Jupyter Notebook (notebook, terminal, text editor, file browser, rich outputs, etc.) in a flexible and powerful user interface. JupyterLab will eventually replace the classic Jupyter Notebook.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.4.9 |
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| 4.2.0 |
|
| 4.0.5 |
|
| 3.5.0 |
|
| 3.2.8 |
|
| 3.2.1 |
|
JupyterLab-git
A JupyterLab extension for version control using Git
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.51.2 |
|
JupyterNotebook
The Jupyter Notebook is the original web application for creating and sharing computational documents. It offers a simple, streamlined, document-centric experience.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 7.4.7 |
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| 7.2.0 |
|
KaHIP
The graph partitioning framework KaHIP -- Karlsruhe High Quality Partitioning.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.16 |
|
| 3.14 |
|
LAME
LAME is a high quality MPEG Audio Layer III (MP3) encoder licensed under the LGPL.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.100 |
|
| 3.100 |
|
| 3.100 |
|
| 3.100 |
|
LAMMPS
LAMMPS Molecular Dynamics Simulator
| Versions | Environment loading command (via Lmod) |
|---|---|
| 30Jul2021-CUDA-11.6.0 |
|
LERC
LERC is an open-source image or raster format which supports rapid encoding and decoding for any pixel type (not just RGB or Byte). Users set the maximum compression error per pixel while encoding, so the precision of the original input image is preserved (within user defined error bounds).
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.0.0 |
|
LKH
LKH-3 is an extension of LKH-2 for solving constrained traveling salesman and vehicle routing problems.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.0.13 |
|
LLVM
The LLVM Core libraries provide a modern source- and target-independent optimizer, along with code generation support for many popular CPUs (as well as some less common ones!) These libraries are built around a well specified code representation known as the LLVM intermediate representation ("LLVM IR
| Versions | Environment loading command (via Lmod) |
|---|---|
| 16.0.6 |
|
| 16.0.6 |
|
| 14.0.6-llvmlite |
|
| 14.0.3 |
|
| 14.0.3 |
|
| 12.0.1 |
|
| 11.1.0 |
|
LMDB
LMDB is a fast, memory-efficient database. With memory-mapped files, it has the read performance of a pure in-memory database while retaining the persistence of standard disk-based databases.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.9.29 |
|
| 0.9.29 |
|
| 0.9.28 |
|
Leptonica
Leptonica is a collection of pedagogically-oriented open source software that is broadly useful for image processing and image analysis applications.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.85.0 |
|
| 1.85.0 |
|
| 1.82.0 |
|
LibTIFF
tiff: Library and tools for reading and writing TIFF data files
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.7.0 |
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| 4.6.0 |
|
| 4.6.0 |
|
| 4.5.0 |
|
| 4.3.0 |
|
| 4.3.0 |
|
| 4.3.0 |
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| 4.2.0 |
|
Libint
Libint library is used to evaluate the traditional (electron repulsion) and certain novel two-body matrix elements (integrals) over Cartesian Gaussian functions used in modern atomic and molecular theory.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.7.2-lmax-6-cp2k |
|
| 2.7.2-lmax-6-cp2k |
|
LittleCMS
Little CMS intends to be an OPEN SOURCE small-footprint color management engine, with special focus on accuracy and performance.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.17 |
|
| 2.13.1 |
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Lua
Lua is a powerful, fast, lightweight, embeddable scripting language. Lua combines simple procedural syntax with powerful data description constructs based on associative arrays and extensible semantics. Lua is dynamically typed, runs by interpreting bytecode for a register-based virtual machine, and has automatic memory management with incremental garbage collection, making it ideal for configuration, scripting, and rapid prototyping.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 5.4.6 |
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| 5.4.4 |
|
| 5.4.4 |
|
M4
GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible although it has some extensions (for example, handling more than 9 positional parameters to macros). GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.4.20 |
|
| 1.4.20 |
|
| 1.4.19 |
|
| 1.4.19 |
|
| 1.4.19 |
|
| 1.4.19 |
|
| 1.4.19 |
|
| 1.4.19 |
|
| 1.4.19 |
|
| 1.4.19 |
|
| 1.4.18 |
|
| 1.4.18 |
|
MATLAB
MATLAB: The Language of Technical Computing
| Versions | Environment loading command (via Lmod) |
|---|---|
| R2024b |
|
| R2023b |
|
| R2023a |
|
MBROLA
MBROLA is a speech synthesizer based on the concatenation of diphones. It takes a list of phonemes as input, together with prosodic information (duration of phonemes and a piecewise linear description of pitch), and produces speech samples on 16 bits (linear), at the sampling frequency of the diphone database. MBROLA voices project provides list of MBROLA speech synthesizer voices. It is intended to provide easier collaboration and automatic updates for individual users and packagers.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.3-voices-20200330 |
|
MDTraj
Read, write and analyze MD trajectories with only a few lines of Python code.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.9.9 |
|
METIS
METIS is a set of serial programs for partitioning graphs, partitioning finite element meshes, and producing fill reducing orderings for sparse matrices. The algorithms implemented in METIS are based on the multilevel recursive-bisection, multilevel k-way, and multi-constraint partitioning schemes.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 5.1.0 |
|
| 5.1.0 |
|
| 5.1.0 |
|
MMseqs2
MMseqs2: ultra fast and sensitive search and clustering suite
| Versions | Environment loading command (via Lmod) |
|---|---|
| 17-b804f-CUDA-12.4.0 |
|
MPC
Gnu Mpc is a C library for the arithmetic of complex numbers with arbitrarily high precision and correct rounding of the result. It extends the principles of the IEEE-754 standard for fixed precision real floating point numbers to complex numbers, providing well-defined semantics for every operation. At the same time, speed of operation at high precision is a major design goal.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.3.1 |
|
| 1.3.1 |
|
MPFR
The MPFR library is a C library for multiple-precision floating-point computations with correct rounding.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.2.0 |
|
| 4.2.0 |
|
| 4.1.0 |
|
| 4.1.0 |
|
MUMPS
A parallel sparse direct solver
| Versions | Environment loading command (via Lmod) |
|---|---|
| 5.6.1-metis |
|
| 5.5.1-metis |
|
Mako
A super-fast templating language that borrows the best ideas from the existing templating languages
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.2.4 |
|
| 1.2.4 |
|
| 1.2.0 |
|
| 1.2.0 |
|
| 1.1.4 |
|
| 1.1.4 |
|
Mesa
Mesa is an open-source implementation of the OpenGL specification - a system for rendering interactive 3D graphics.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 25.2.1 |
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| 23.1.9 |
|
| 23.1.4 |
|
| 22.0.3 |
|
| 22.0.3 |
|
| 21.1.7 |
|
| 21.1.1 |
|
Meson
Meson is a cross-platform build system designed to be both as fast and as user friendly as possible.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.8.2 |
|
| 1.6.1 |
|
| 1.6.1 |
|
| 1.4.0 |
|
| 1.2.3 |
|
| 1.1.1 |
|
| 0.64.0 |
|
| 0.62.1 |
|
| 0.62.1 |
|
| 0.58.2 |
|
| 0.58.0 |
|
MinIO-Client
MinIO Client (mc) provides a modern alternative to UNIX commands like ls, cat, cp, mirror, diff, find etc. It supports filesystems and Amazon S3 compatible cloud storage service (AWS Signature v2 and v4).
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2024-07-31T15-58-33Z |
|
Miniconda3
Miniconda is a free minimal installer for conda. It is a small, bootstrap version of Anaconda that includes only conda, Python, the packages they depend on, and a small number of other useful packages.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 23.3.1-0 |
|
| 4.9.2 |
|
MotionCor2
MotionCor2 correct anisotropic image motion at the single pixel level across the whole frame, suitable for both single particle and tomographic images. Iterative, patch-based motion detection is combined with spatial and temporal constraints and dose weighting. Cite publication: Shawn Q. Zheng, Eugene Palovcak, Jean-Paul Armache, Yifan Cheng and David A. Agard (2016) Anisotropic Correction of Beam-induced Motion for Improved Single-particle Electron Cryo-microscopy, Nature Methods, submitted. BioArxiv: https://biorxiv.org/content/early/2016/07/04/061960
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.4.5 |
|
MuJoCo
MuJoCo stands for Multi-Joint dynamics with Contact. It is a general purpose physics engine that aims to facilitate research and development in robotics, biomechanics, graphics and animation, machine learning, and other areas which demand fast and accurate simulation of articulated structures interacting with their environment.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.2.2 |
|
NAMD
NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.0b3-Linux-x86_64-multicore-CUDA |
|
| 2.14 |
|
| 2.14 |
|
NASM
NASM: General-purpose x86 assembler
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.16.03 |
|
| 2.16.03 |
|
| 2.16.01 |
|
| 2.16.01 |
|
| 2.15.05 |
|
| 2.15.05 |
|
| 2.15.05 |
|
| 2.15.05 |
|
NCCL
The NVIDIA Collective Communications Library (NCCL) implements multi-GPU and multi-node collective communication primitives that are performance optimized for NVIDIA GPUs.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.20.5-CUDA-12.4.0 |
|
| 2.18.3-CUDA-12.1.1 |
|
| 2.16.2-CUDA-12.0.0 |
|
| 2.12.12-CUDA-11.7.0 |
|
| 2.10.3-CUDA-11.6.0 |
|
| 2.10.3-CUDA-11.3.1 |
|
NLopt
NLopt is a free/open-source library for nonlinear optimization, providing a common interface for a number of different free optimization routines available online as well as original implementations of various other algorithms.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.7.1 |
|
NSPR
Netscape Portable Runtime (NSPR) provides a platform-neutral API for system level and libc-like functions.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.35 |
|
| 4.35 |
|
| 4.34 |
|
NSS
Network Security Services (NSS) is a set of libraries designed to support cross-platform development of security-enabled client and server applications.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.94 |
|
| 3.89.1 |
|
| 3.79 |
|
NTPoly
is a massively parallel library for computing the functions of sparse, symmetric matrices based on polynomial expansions. For sufficiently sparse matrices, most of the matrix functions in NTPoly can be computed in linear time.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.7.0 |
|
| 2.7.0 |
|
NVHPC
C, C++ and Fortran compilers included with the NVIDIA HPC SDK (previously: PGI)
| Versions | Environment loading command (via Lmod) |
|---|---|
| 24.5-CUDA-12.4.0 |
|
| 23.7-CUDA-12.1.1 |
|
| 23.1-CUDA-12.0.0 |
|
| 22.11-CUDA-11.7.0 |
|
| 22.7 |
|
NiBabel
NiBabel provides read/write access to some common medical and neuroimaging file formats, including: ANALYZE (plain, SPM99, SPM2 and later), GIFTI, NIfTI1, NIfTI2, MINC1, MINC2, MGH and ECAT as well as Philips PAR/REC. We can read and write Freesurfer geometry, and read Freesurfer morphometry and annotation files. There is some very limited support for DICOM. NiBabel is the successor of PyNIfTI.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.2.1 |
|
Ninja
Ninja is a small build system with a focus on speed.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.13.0 |
|
| 1.12.1 |
|
| 1.12.1 |
|
| 1.11.1 |
|
| 1.11.1 |
|
| 1.11.1 |
|
| 1.10.2 |
|
| 1.10.2 |
|
| 1.10.2 |
|
| 1.10.2 |
|
OSU-Micro-Benchmarks
OSU Micro-Benchmarks
| Versions | Environment loading command (via Lmod) |
|---|---|
| 7.3 |
|
| 7.3 |
|
| 7.1-1 |
|
| 5.9-CUDA-11.6.0 |
|
| 5.9-CUDA-11.3.1 |
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OpenBLAS
OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version.
| Versions | Environment loading command (via Lmod) |
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| 0.3.29 |
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| 0.3.24 |
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| 0.3.24 |
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| 0.3.23 |
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| 0.3.21 |
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| 0.3.20 |
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| 0.3.18 |
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| 0.3.15 |
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OpenCV
OpenCV (Open Source Computer Vision Library) is an open source computer vision and machine learning software library. OpenCV was built to provide a common infrastructure for computer vision applications and to accelerate the use of machine perception in the commercial products. Includes extra modules for OpenCV from the contrib repository.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.6.0-CUDA-11.7.0-contrib |
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| 4.5.3-CUDA-11.3.1-contrib |
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OpenEXR
OpenEXR is a high dynamic-range (HDR) image file format developed by Industrial Light & Magic for use in computer imaging applications
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.1.7 |
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| 3.1.5 |
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| 3.0.1 |
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OpenFOAM
OpenFOAM is a free, open source CFD software package. OpenFOAM has an extensive range of features to solve anything from complex fluid flows involving chemical reactions, turbulence and heat transfer, to solid dynamics and electromagnetics.
| Versions | Environment loading command (via Lmod) |
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| v2312 |
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OpenJPEG
OpenJPEG is an open-source JPEG 2000 codec written in C language. It has been developed in order to promote the use of JPEG 2000, a still-image compression standard from the Joint Photographic Experts Group (JPEG). Since may 2015, it is officially recognized by ISO/IEC and ITU-T as a JPEG 2000 Reference Software.
| Versions | Environment loading command (via Lmod) |
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| 2.5.3 |
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| 2.5.0 |
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| 2.5.0 |
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| 2.5.0 |
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OpenMM
OpenMM is a toolkit for molecular simulation.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 8.0.0-CUDA-12.1.1 |
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OpenMPI
The Open MPI Project is an open source MPI-3 implementation.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 5.0.7 |
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| 4.1.6 |
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| 4.1.6 |
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| 4.1.5 |
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| 4.1.5 |
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| 4.1.5 |
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| 4.1.4-mpi-thread-multiple |
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| 4.1.4 |
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| 4.1.4 |
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| 4.1.4 |
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| 4.1.4 |
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| 4.1.2-CUDA-11.6.0 |
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| 4.1.2 |
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| 4.1.2 |
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| 4.1.1 |
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OpenPGM
OpenPGM is an open source implementation of the Pragmatic General Multicast (PGM) specification in RFC 3208 available at www.ietf.org. PGM is a reliable and scalable multicast protocol that enables receivers to detect loss, request retransmission of lost data, or notify an application of unrecoverable loss. PGM is a receiver-reliable protocol, which means the receiver is responsible for ensuring all data is received, absolving the sender of reception responsibility.
| Versions | Environment loading command (via Lmod) |
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| 5.2.122 |
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| 5.2.122 |
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| 5.2.122 |
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| 5.2.122 |
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| 5.2.122 |
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OpenSSL
The OpenSSL Project is a collaborative effort to develop a robust, commercial-grade, full-featured, and Open Source toolchain implementing the Secure Sockets Layer (SSL v2/v3) and Transport Layer Security (TLS v1) protocols as well as a full-strength general purpose cryptography library.
| Versions | Environment loading command (via Lmod) |
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| 3 |
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| 1.1 |
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PCRE
The PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl 5.
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|---|---|
| 8.45 |
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| 8.45 |
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| 8.45 |
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| 8.44 |
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PCRE2
The PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl 5.
| Versions | Environment loading command (via Lmod) |
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| 10.45 |
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| 10.43 |
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| 10.42 |
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| 10.42 |
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| 10.40 |
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| 10.36 |
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PETSc
PETSc, pronounced PET-see (the S is silent), is a suite of data structures and routines for the scalable (parallel) solution of scientific applications modeled by partial differential equations.
| Versions | Environment loading command (via Lmod) |
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| 3.20.3 |
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PLUMED
PLUMED is an open source library for free energy calculations in molecular systems which works together with some of the most popular molecular dynamics engines. Free energy calculations can be performed as a function of many order parameters with a particular focus on biological problems, using state of the art methods such as metadynamics, umbrella sampling and Jarzynski-equation based steered MD. The software, written in C++, can be easily interfaced with both fortran and C/C++ codes.
| Versions | Environment loading command (via Lmod) |
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| 2.8.1 |
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| 2.8.0 |
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| 2.8.0 |
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PMIx
Process Management for Exascale Environments PMI Exascale (PMIx) represents an attempt to provide an extended version of the PMI standard specifically designed to support clusters up to and including exascale sizes. The overall objective of the project is not to branch the existing pseudo-standard definitions - in fact, PMIx fully supports both of the existing PMI-1 and PMI-2 APIs - but rather to (a) augment and extend those APIs to eliminate some current restrictions that impact scalability, and (b) provide a reference implementation of the PMI-server that demonstrates the desired level of scalability.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 5.0.6 |
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| 4.2.6 |
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| 4.2.4 |
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| 4.2.2 |
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| 4.1.2 |
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| 4.1.0 |
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| 3.2.3 |
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POV-Ray
The Persistence of Vision Raytracer, or POV-Ray, is a ray tracing program which generates images from a text-based scene description, and is available for a variety of computer platforms. POV-Ray is a high-quality, Free Software tool for creating stunning three-dimensional graphics. The source code is available for those wanting to do their own ports.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.7.0.10 |
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PROJ
Program proj is a standard Unix filter function which converts geographic longitude and latitude coordinates into cartesian coordinates
| Versions | Environment loading command (via Lmod) |
|---|---|
| 9.2.0 |
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| 9.0.0 |
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PRRTE
PRRTE is the PMIx Reference RunTime Environment
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.0.8 |
|
Pango
Pango is a library for laying out and rendering of text, with an emphasis on internationalization. Pango can be used anywhere that text layout is needed, though most of the work on Pango so far has been done in the context of the GTK+ widget toolkit. Pango forms the core of text and font handling for GTK+-2.x.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.54.0 |
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| 1.51.0 |
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| 1.50.14 |
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| 1.50.7 |
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| 1.48.8 |
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| 1.48.5 |
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ParMETIS
ParMETIS is an MPI-based parallel library that implements a variety of algorithms for partitioning unstructured graphs, meshes, and for computing fill-reducing orderings of sparse matrices. ParMETIS extends the functionality provided by METIS and includes routines that are especially suited for parallel AMR computations and large scale numerical simulations. The algorithms implemented in ParMETIS are based on the parallel multilevel k-way graph-partitioning, adaptive repartitioning, and parallel multi-constrained partitioning schemes.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.0.3 |
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| 4.0.3 |
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ParaView
ParaView is a scientific parallel visualizer.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 5.11.2 |
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| 5.10.1-mpi |
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Perl
Larry Wall's Practical Extraction and Report Language Includes a small selection of extra CPAN packages for core functionality.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 5.40.2 |
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| 5.40.0 |
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| 5.38.2 |
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| 5.38.0 |
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| 5.38.0 |
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| 5.36.1 |
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| 5.36.0 |
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| 5.34.1-minimal |
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| 5.34.1 |
|
| 5.34.1 |
|
| 5.34.0 |
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| 5.32.1-minimal |
|
| 5.32.1 |
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Perl-bundle-CPAN
A set of common packages from CPAN
| Versions | Environment loading command (via Lmod) |
|---|---|
| 5.40.0 |
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| 5.38.2 |
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| 5.38.0 |
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| 5.36.1 |
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Pillow
Pillow is the 'friendly PIL fork' by Alex Clark and Contributors. PIL is the Python Imaging Library by Fredrik Lundh and Contributors.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 11.3.0 |
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| 10.0.0 |
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| 9.1.1 |
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| 8.3.2 |
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| 8.2.0 |
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PnetCDF
Parallel netCDF: A Parallel I/O Library for NetCDF File Access
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.12.3 |
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| 1.12.3 |
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| 1.12.2 |
|
PostgreSQL
PostgreSQL is a powerful, open source object-relational database system. It is fully ACID compliant, has full support for foreign keys, joins, views, triggers, and stored procedures (in multiple languages). It includes most SQL:2008 data types, including INTEGER, NUMERIC, BOOLEAN, CHAR, VARCHAR, DATE, INTERVAL, and TIMESTAMP. It also supports storage of binary large objects, including pictures, sounds, or video. It has native programming interfaces for C/C++, Java, .Net, Perl, Python, Ruby, Tcl, ODBC, among others, and exceptional documentation.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 16.1 |
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| 16.1 |
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PyCairo
Python bindings for the cairo library
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.21.0 |
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PyGObject
PyGObject is a Python package which provides bindings for GObject based libraries such as GTK, GStreamer, WebKitGTK, GLib, GIO and many more.
| Versions | Environment loading command (via Lmod) |
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| 3.42.1 |
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PyMOL
PyMOL is a Python-enhanced molecular graphics tool. It excels at 3D visualization of proteins, small molecules, density, surfaces, and trajectories. It also includes molecular editing, ray tracing, and movies. Open Source PyMOL is free to everyone!
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.0.2 |
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PyOpenGL
PyOpenGL is the most common cross platform Python binding to OpenGL and related APIs.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.1.6 |
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PyQt5
PyQt5 is a set of Python bindings for v5 of the Qt application framework from The Qt Company. This bundle includes PyQtWebEngine, a set of Python bindings for The Qt Company’s Qt WebEngine framework.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 5.15.5 |
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PyTorch
Tensors and Dynamic neural networks in Python with strong GPU acceleration. PyTorch is a deep learning framework that puts Python first.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.13.1-CUDA-11.7.0 |
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| 1.12.1-CUDA-11.3.1 |
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| 1.10.0-CUDA-11.3.1 |
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PyTorch-Geometric
PyTorch Geometric (PyG) is a geometric deep learning extension library for PyTorch.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.5.1 |
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| 2.1.0-PyTorch-1.12.1-CUDA-11.3.1 |
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PyTorch-Lightning
PyTorch Lightning is the lightweight PyTorch wrapper for ML researchers.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.5.9-CUDA-11.3.1 |
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PyYAML
PyYAML is a YAML parser and emitter for the Python programming language.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 6.0.2 |
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| 6.0.2 |
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| 6.0.1 |
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| 6.0 |
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| 6.0 |
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| 5.4.1 |
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PyZMQ
Python bindings for ZeroMQ
| Versions | Environment loading command (via Lmod) |
|---|---|
| 27.1.0 |
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| 25.1.2 |
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| 25.1.1 |
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PycURL
PycURL is a Python interface to libcurl. PycURL can be used to fetch objects identified by a URL from a Python program, similar to the urllib Python module. PycURL is mature, very fast, and supports a lot of features.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 7.45.3 |
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| 7.45.2 |
|
Python
Python is a programming language that lets you work more quickly and integrate your systems more effectively.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.13.5 |
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| 3.13.1 |
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| 3.12.3 |
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| 3.11.5 |
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| 3.11.3 |
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| 3.10.8-bare |
|
| 3.10.8 |
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| 3.10.4-bare |
|
| 3.10.4 |
|
| 3.10.4 |
|
| 3.9.6-bare |
|
| 3.9.6 |
|
| 3.9.5-bare |
|
| 3.9.5 |
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| 2.7.18-bare |
|
| 2.7.18 |
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Python-bundle-PyPI
Bundle of Python packages from PyPI
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2025.07 |
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| 2025.04 |
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| 2023.10 |
|
| 2023.06 |
|
Qhull
Qhull computes the convex hull, Delaunay triangulation, Voronoi diagram, halfspace intersection about a point, furthest-site Delaunay triangulation, and furthest-site Voronoi diagram. The source code runs in 2-d, 3-d, 4-d, and higher dimensions. Qhull implements the Quickhull algorithm for computing the convex hull.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2020.2 |
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| 2020.2 |
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| 2020.2 |
|
| 2020.2 |
|
Qt5
Qt is a comprehensive cross-platform C++ application framework.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 5.15.10 |
|
| 5.15.5 |
|
Qt6
Qt is a comprehensive cross-platform C++ application framework.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 6.6.3 |
|
QuantumESPRESSO
Quantum ESPRESSO is an integrated suite of computer codes for electronic-structure calculations and materials modeling at the nanoscale. It is based on density-functional theory, plane waves, and pseudopotentials (both norm-conserving and ultrasoft).
| Versions | Environment loading command (via Lmod) |
|---|---|
| 7.2-nvompic-2022a |
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| 7.1-nvompic-2021b-SMP |
|
| 7.1-nvompic-2021b |
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R
R is a free software environment for statistical computing and graphics.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.3.2-gpu |
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| 4.2.3 |
|
RDFlib
RDFLib is a Python library for working with RDF, a simple yet powerful language for representing information.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 6.2.0 |
|
RE2
RE2 is a fast, safe, thread-friendly alternative to backtracking regular expression engines like those used in PCRE, Perl, and Python. It is a C++ library.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2024-07-02 |
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| 2023-08-01 |
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RELION
RELION (for REgularised LIkelihood OptimisatioN, pronounce rely-on) is a stand-alone computer program that employs an empirical Bayesian approach to refinement of (multiple) 3D reconstructions or 2D class averages in electron cryo-microscopy (cryo-EM).
| Versions | Environment loading command (via Lmod) |
|---|---|
| 5.0.0-CUDA-12.4.0 |
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RStudio-Server
This is the RStudio Server version. RStudio is a set of integrated tools designed to help you be more productive with R. The server can be started with: rserver --server-daemonize=0 --www-port 8787 --rsession-which-r=$(which R)
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2024.04.2+764-Java-11-R-4.3.2 |
|
| 2022.12.0+353-Java-11-R-4.3.2 |
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RapidJSON
A fast JSON parser/generator for C++ with both SAX/DOM style API
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.1.0-20240815 |
|
| 1.1.0-20230928 |
|
Redis
Redis is an open source (BSD licensed), in-memory data structure store, used as a database, cache, and message broker. Redis provides data structures such as strings, hashes, lists, sets, sorted sets with range queries, bitmaps, hyperloglogs, geospatial indexes, and streams. Redis has built-in replication, Lua scripting, LRU eviction, transactions, and different levels of on-disk persistence, and provides high availability via Redis Sentinel and automatic partitioning with Redis Cluster.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 7.0.8 |
|
Ruby
Ruby is a dynamic, open source programming language with a focus on simplicity and productivity. It has an elegant syntax that is natural to read and easy to write.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.7.7 |
|
Rust
Rust is a systems programming language that runs blazingly fast, prevents segfaults, and guarantees thread safety.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.88.0 |
|
| 1.85.1 |
|
| 1.73.0 |
|
| 1.70.0 |
|
| 1.65.0 |
|
| 1.65.0 |
|
| 1.60.0 |
|
| 1.60.0 |
|
| 1.54.0 |
|
| 1.52.1 |
|
SCOTCH
Software package and libraries for sequential and parallel graph partitioning, static mapping, and sparse matrix block ordering, and sequential mesh and hypergraph partitioning.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 7.0.3 |
|
| 7.0.1 |
|
SDL2
SDL: Simple DirectMedia Layer, a cross-platform multimedia library
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.28.5 |
|
| 2.28.2 |
|
| 2.0.22 |
|
| 2.0.20 |
|
SIRIUS
SIRIUS is a domain specific library for electronic structure calculations. It implements pseudopotential plane wave (PP-PW) and full potential linearized augmented plane wave (FP-LAPW) methods and is designed for GPU acceleration of popular community codes such as Exciting, Elk and Quantum ESPRESSO.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 7.5.2-CUDA-11.7.0 |
|
SOCI
SOCI is a database access library for C++ that makes the illusion of embedding SQL queries in the regular C++ code, staying entirely within the Standard C++.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.0.3 |
|
SPLA
SPLA provides functions for distributed matrix multiplications with specific matrix distributions, which cannot be used directly with a ScaLAPACK interface. All computations can optionally utilize GPUs through CUDA or ROCm, where matrices can be located either in host or device memory.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.5.5-CUDA-11.7.0 |
|
SQLAlchemy
SQLAlchemy is the Python SQL toolkit and Object Relational Mapper that gives application developers the full power and flexibility of SQL. SQLAlchemy provides a full suite of well known enterprise-level persistence patterns, designed for efficient and high-performing database access, adapted into a simple and Pythonic domain language.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.0.29 |
|
SQLite
SQLite: SQL Database Engine in a C Library
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.50.1 |
|
| 3.47.2 |
|
| 3.45.3 |
|
| 3.43.1 |
|
| 3.42.0 |
|
| 3.39.4 |
|
| 3.38.3 |
|
| 3.38.3 |
|
| 3.36 |
|
| 3.35.4 |
|
SWIG
SWIG is a software development tool that connects programs written in C and C++ with a variety of high-level programming languages.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.3.1 |
|
| 4.1.1 |
|
| 4.0.2 |
|
ScaLAPACK
The ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines redesigned for distributed memory MIMD parallel computers.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.2.2-fb |
|
| 2.2.0-fb |
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| 2.2.0-fb |
|
| 2.2.0-fb |
|
| 2.2.0-fb |
|
| 2.2.0-fb |
|
| 2.2.0 |
|
| 2.1.0-fb |
|
| 2.1.0-fb |
|
SciPy-bundle
Bundle of Python packages for scientific software
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2025.06 |
|
| 2023.07 |
|
| 2023.02 |
|
| 2022.05 |
|
| 2021.10 |
|
| 2021.05 |
|
Seaborn
Seaborn is a Python visualization library based on matplotlib. It provides a high-level interface for drawing attractive statistical graphics.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.13.2 |
|
Siesta
SIESTA is both a method and its computer program implementation, to perform efficient electronic structure calculations and ab initio molecular dynamics simulations of molecules and solids.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.1.5-CUDA-11.7.0 |
|
SoX
SoX is the Swiss Army Knife of sound processing utilities. It can convert audio files to other popular audio file types and also apply sound effects and filters during the conversion.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 14.4.2 |
|
| 14.4.2 |
|
SpFFT
SpFFT - A 3D FFT library for sparse frequency domain data written in C++ with support for MPI, OpenMP, CUDA and ROCm.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.0.6-CUDA-11.7.0 |
|
SuiteSparse
SuiteSparse is a collection of libraries to manipulate sparse matrices.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 7.1.0 |
|
| 5.13.0-METIS-5.1.0 |
|
SuperLU
SuperLU is a general purpose library for the direct solution of large, sparse, nonsymmetric systems of linear equations on high performance machines.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 5.3.0 |
|
SuperLU_DIST
SuperLU is a general purpose library for the direct solution of large, sparse, nonsymmetric systems of linear equations on high performance machines.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 8.1.2 |
|
Szip
Szip compression software, providing lossless compression of scientific data
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.1.1 |
|
| 2.1.1 |
|
| 2.1.1 |
|
| 2.1.1 |
|
| 2.1.1 |
|
Tcl
Tcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, suitable for a very wide range of uses, including web and desktop applications, networking, administration, testing and many more.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 9.0.1 |
|
| 8.6.16 |
|
| 8.6.14 |
|
| 8.6.13 |
|
| 8.6.13 |
|
| 8.6.12 |
|
| 8.6.12 |
|
| 8.6.12 |
|
| 8.6.11 |
|
| 8.6.11 |
|
TensorFlow
An open-source software library for Machine Intelligence
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.11.0-CUDA-11.7.0 |
|
| 2.5.3-CUDA-11.3.1 |
|
TeraChem
TeraChem is general purpose quantum chemistry software designed to run on NVIDIA GPU architectures under a 64-bit Linux operating system.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.95 |
|
Tk
Tk is an open source, cross-platform widget toolchain that provides a library of basic elements for building a graphical user interface (GUI) in many different programming languages.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 8.6.16 |
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| 8.6.13 |
|
| 8.6.12 |
|
| 8.6.11 |
|
| 8.6.11 |
|
Tkinter
Tkinter module, built with the Python buildsystem
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.13.1 |
|
| 3.11.3 |
|
| 3.10.4 |
|
| 3.9.6 |
|
| 3.9.5 |
|
TurboVNC
TurboVNC is a derivative of VNC (Virtual Network Computing) that is tuned to provide peak performance for 3D and video workloads.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.2 |
|
| 3.0.1 |
|
UCC
UCC (Unified Collective Communication) is a collective communication operations API and library that is flexible, complete, and feature-rich for current and emerging programming models and runtimes.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.3.0 |
|
| 1.2.0 |
|
| 1.2.0 |
|
| 1.1.0 |
|
| 1.0.0 |
|
UCC-CUDA
UCC (Unified Collective Communication) is a collective communication operations API and library that is flexible, complete, and feature-rich for current and emerging programming models and runtimes. This module adds the UCC CUDA support.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.2.0-CUDA-12.4.0 |
|
| 1.2.0-CUDA-12.1.1 |
|
| 1.1.0-CUDA-12.0.0 |
|
| 1.0.0-CUDA-11.7.0 |
|
UCX
Unified Communication X An open-source production grade communication framework for data centric and high-performance applications
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.18.0 |
|
| 1.16.0 |
|
| 1.15.0 |
|
| 1.14.1 |
|
| 1.13.1 |
|
| 1.13.0 |
|
| 1.12.1 |
|
| 1.12.1 |
|
| 1.12.1 |
|
| 1.11.2 |
|
| 1.10.0 |
|
UCX-CUDA
Unified Communication X An open-source production grade communication framework for data centric and high-performance applications This module adds the UCX CUDA support.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.18.0-CUDA-12.8.0 |
|
| 1.16.0-CUDA-12.4.0 |
|
| 1.15.0-CUDA-12.4.0 |
|
| 1.14.1-CUDA-12.1.1 |
|
| 1.13.1-CUDA-12.0.0 |
|
| 1.13.0-CUDA-11.7.0 |
|
| 1.12.1-CUDA-11.7.0 |
|
| 1.12.1-CUDA-11.6.0 |
|
| 1.12.1-CUDA-11.4.1 |
|
| 1.12.1-CUDA-11.3.1 |
|
| 1.11.2-CUDA-11.4.1 |
|
| 1.10.0-CUDA-11.3.1 |
|
UDUNITS
UDUNITS supports conversion of unit specifications between formatted and binary forms, arithmetic manipulation of units, and conversion of values between compatible scales of measurement.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.2.28 |
|
Umpire
Umpire is a resource management library that allows the discovery, provision, and management of memory on machines with multiple memory devices like NUMA and GPUs.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2024.02.1-CUDA-12.1.1 |
|
UnZip
UnZip is an extraction utility for archives compressed in .zip format (also called "zipfiles
| Versions | Environment loading command (via Lmod) |
|---|---|
| 6.0 |
|
| 6.0 |
|
| 6.0 |
|
| 6.0 |
|
| 6.0 |
|
| 6.0 |
|
| 6.0 |
|
| 6.0 |
|
| 6.0 |
|
| 6.0 |
|
VASP
The Vienna Ab initio Simulation Package (VASP) is a computer program for atomic scale materials modelling, e.g. electronic structure calculations and quantum-mechanical molecular dynamics, from first principles.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 6.4.3 |
|
| 6.3.2 |
|
| 6.3.0 |
|
VMD
VMD is a molecular visualization program for displaying, animating, and analyzing large biomolecular systems using 3-D graphics and built-in scripting.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.9.4a57 |
|
VSCode
Visual Studio Code is a lightweight but powerful source code editor which runs on your desktop and is available for Windows, macOS and Linux. It comes with built-in support for JavaScript, TypeScript and Node.js and has a rich ecosystem of extensions for other languages and runtimes (such as C++, C#, Java, Python, PHP, Go, .NET). Begin your journey with VS Code with these introductory videos.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.100.1 |
|
| 1.92 |
|
| 1.85.0 |
|
VirtualGL
VirtualGL is an open source toolkit that gives any Linux or Unix remote display software the ability to run OpenGL applications with full hardware acceleration.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.1.3 |
|
| 3.1.1 |
|
Wannier90
A tool for obtaining maximally-localised Wannier functions
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.1.0 |
|
| 3.1.0 |
|
Wayland
Wayland is a project to define a protocol for a compositor to talk to its clients as well as a library implementation of the protocol. The compositor can be a standalone display server running on Linux kernel modesetting and evdev input devices, an X application, or a wayland client itself. The clients can be traditional applications, X servers (rootless or fullscreen) or other display servers.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.22.0 |
|
| 1.20.0 |
|
X11
The X Window System (X11) is a windowing system for bitmap displays
| Versions | Environment loading command (via Lmod) |
|---|---|
| 20250521 |
|
| 20240607 |
|
| 20231019 |
|
| 20230603 |
|
| 20220504 |
|
| 20220504 |
|
| 20210802 |
|
| 20210518 |
|
XGBoost
XGBoost is an optimized distributed gradient boosting library designed to be highly efficient, flexible and portable.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.0.2 |
|
XZ
xz: XZ utilities
| Versions | Environment loading command (via Lmod) |
|---|---|
| 5.8.1 |
|
| 5.6.3 |
|
| 5.4.5 |
|
| 5.4.4 |
|
| 5.4.2 |
|
| 5.2.7 |
|
| 5.2.7 |
|
| 5.2.7 |
|
| 5.2.5 |
|
| 5.2.5 |
|
| 5.2.5 |
|
| 5.2.5 |
|
Xerces-C++
Xerces-C++ is a validating XML parser written in a portable subset of C++. Xerces-C++ makes it easy to give your application the ability to read and write XML data. A shared library is provided for parsing, generating, manipulating, and validating XML documents using the DOM, SAX, and SAX2 APIs.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.2.4 |
|
Xvfb
Xvfb is an X server that can run on machines with no display hardware and no physical input devices. It emulates a dumb framebuffer using virtual memory.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 21.1.3 |
|
YACS
YACS was created as a lightweight library to define and manage system configurations, such as those commonly found in software designed for scientific experimentation. These "configurations" typically cover concepts like hyperparameters used in training a machine learning model or configurable model hyperparameters, such as the depth of a convolutional neural network.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.1.8 |
|
Yambo
Yambo is a FORTRAN/C code for Many-Body calculations in solid state and molecular physics. Yambo relies on the Kohn-Sham wavefunctions generated by two DFT public codes: abinit, and PWscf.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 5.2.1 |
|
| 5.2.0-no-time-profile |
|
| 5.1.1-991f327-no-time-profile |
|
| 5.1.1-991f327 |
|
Yasm
Yasm: Complete rewrite of the NASM assembler with BSD license
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.3.0 |
|
| 1.3.0 |
|
| 1.3.0 |
|
| 1.3.0 |
|
Z3
Z3 is a theorem prover from Microsoft Research with support for bitvectors, booleans, arrays, floating point numbers, strings, and other data types. This module includes z3-solver, the Python interface of Z3.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.13.0 |
|
| 4.12.2 |
|
| 4.10.2 |
|
| 4.10.2 |
|
| 4.8.12 |
|
ZeroMQ
ZeroMQ looks like an embeddable networking library but acts like a concurrency framework. It gives you sockets that carry atomic messages across various transports like in-process, inter-process, TCP, and multicast. You can connect sockets N-to-N with patterns like fanout, pub-sub, task distribution, and request-reply. It's fast enough to be the fabric for clustered products. Its asynchronous I/O model gives you scalable multicore applications, built as asynchronous message-processing tasks. It has a score of language APIs and runs on most operating systems.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.3.5 |
|
| 4.3.5 |
|
| 4.3.4 |
|
| 4.3.4 |
|
| 4.3.4 |
|
Zip
Zip is a compression and file packaging/archive utility. Although highly compatible both with PKWARE's PKZIP and PKUNZIP utilities for MS-DOS and with Info-ZIP's own UnZip, our primary objectives have been portability and other-than-MSDOS functionality
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.0 |
|
| 3.0 |
|
| 3.0 |
|
| 3.0 |
|
aiohttp
Asynchronous HTTP client/server framework for asyncio and Python.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.12.15 |
|
| 3.9.5 |
|
| 3.8.5 |
|
alsa-lib
The Advanced Linux Sound Architecture (ALSA) provides audio and MIDI functionality to the Linux operating system.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.2.8 |
|
angsd
Program for analysing NGS data.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.940 |
|
ant
Apache Ant is a Java library and command-line tool whose mission is to drive processes described in build files as targets and extension points dependent upon each other. The main known usage of Ant is the build of Java applications.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.10.12-Java-11 |
|
| 1.10.11-Java-11 |
|
| 1.10.9-Java-11 |
|
archspec
A library for detecting, labeling, and reasoning about microarchitectures
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.1.3 |
|
aria2
aria2 is a lightweight multi-protocol & multi-source command-line download utility.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.36.0 |
|
arpack-ng
ARPACK is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.9.0 |
|
assimp
Open Asset Import Library (assimp) is a library to import and export various 3d-model-formats including scene-post-processing to generate missing render data.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 5.3.1 |
|
asyncssh
AsyncSSH is a Python package which provides an asynchronous client and server implementation of the SSHv2 protocol on top of the Python 3.6+ asyncio framework.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.21.1 |
|
| 2.14.2 |
|
| 2.14.2 |
|
at-spi2-atk
AT-SPI 2 toolkit bridge
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.38.0 |
|
| 2.38.0 |
|
| 2.38.0 |
|
at-spi2-core
Assistive Technology Service Provider Interface.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.50.0 |
|
| 2.44.1 |
|
| 2.40.2 |
|
bcrypt
Acceptable password hashing for your software and your servers (but you should really use argon2id or scrypt)
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.1.3 |
|
binutils
binutils: GNU binary utilities
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.44 |
|
| 2.44 |
|
| 2.42 |
|
| 2.42 |
|
| 2.42 |
|
| 2.40 |
|
| 2.40 |
|
| 2.40 |
|
| 2.39 |
|
| 2.39 |
|
| 2.38 |
|
| 2.38 |
|
| 2.37 |
|
| 2.37 |
|
| 2.36.1 |
|
| 2.36.1 |
|
| 2.35 |
|
bio-embeddings
Bio Embeddings.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.2.3 |
|
| 0.2.2 |
|
bokeh
Statistical and novel interactive HTML plots for Python
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.7.3 |
|
| 2.4.1 |
|
bzip2
bzip2 is a freely available, patent free, high-quality data compressor. It typically compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical compressors), whilst being around twice as fast at compression and six times faster at decompression.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.0.8 |
|
| 1.0.8 |
|
| 1.0.8 |
|
| 1.0.8 |
|
| 1.0.8 |
|
| 1.0.8 |
|
| 1.0.8 |
|
| 1.0.8 |
|
| 1.0.8 |
|
| 1.0.8 |
|
c-ares
c-ares is a C library for asynchronous DNS requests (including name resolves)
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.18.1 |
|
cURL
libcurl is a free and easy-to-use client-side URL transfer library, supporting DICT, FILE, FTP, FTPS, Gopher, HTTP, HTTPS, IMAP, IMAPS, LDAP, LDAPS, POP3, POP3S, RTMP, RTSP, SCP, SFTP, SMTP, SMTPS, Telnet and TFTP. libcurl supports SSL certificates, HTTP POST, HTTP PUT, FTP uploading, HTTP form based upload, proxies, cookies, user+password authentication (Basic, Digest, NTLM, Negotiate, Kerberos), file transfer resume, http proxy tunneling and more.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 8.14.1 |
|
| 8.11.1 |
|
| 8.7.1 |
|
| 8.3.0 |
|
| 8.0.1 |
|
| 7.86.0 |
|
| 7.83.0 |
|
| 7.83.0 |
|
| 7.78.0 |
|
| 7.76.0 |
|
cairo
Cairo is a 2D graphics library with support for multiple output devices. Currently supported output targets include the X Window System (via both Xlib and XCB), Quartz, Win32, image buffers, PostScript, PDF, and SVG file output. Experimental backends include OpenGL, BeOS, OS/2, and DirectFB
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.18.0 |
|
| 1.18.0 |
|
| 1.17.8 |
|
| 1.17.4 |
|
| 1.16.0 |
|
| 1.16.0 |
|
camp
CAMP Concepts And Meta-Programming library
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2024.02.0-CUDA-11.7.0 |
|
ccache
Ccache (or “ccache”) is a compiler cache. It speeds up recompilation by caching previous compilations and detecting when the same compilation is being done again
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.9 |
|
cffi
C Foreign Function Interface for Python. Interact with almost any C code from Python, based on C-like declarations that you can often copy-paste from header files or documentation.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.17.1 |
|
| 1.17.1 |
|
| 1.15.1 |
|
| 1.15.1 |
|
chroma
Chroma software
| Versions | Environment loading command (via Lmod) |
|---|---|
| 9e78369-CUDA-12.4.0 |
|
configurable-http-proxy
HTTP proxy for node.js including a REST API for updating the routing table. Developed as a part of the Jupyter Hub multi-user server.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.6.1 |
|
| 4.5.6 |
|
| 4.5.4 |
|
cppy
A small C++ header library which makes it easier to write Python extension modules. The primary feature is a PyObject smart pointer which automatically handles reference counting and provides convenience methods for performing common object operations.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.3.1 |
|
| 1.2.1 |
|
| 1.1.0 |
|
| 1.1.0 |
|
cramjam
Your go-to for easy access to a plethora of compression algorithms, all neatly bundled in one simple installation.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.9.0 |
|
cryoSPARC
CryoSPARC is a state of the art scientific software platform for cryo-electron microscopy (cryo-EM) used in research and drug discovery pipelines.
| Versions | Environment loading command (via Lmod) |
|---|---|
| default |
|
| 4.7.0 |
|
| 4.6.2 |
|
| 4.5.3-240807 |
|
| 4.5.1 |
|
| 4.4.1-240110 |
|
| 4.4.0-231114 |
|
| 4.3.0 |
|
| 4.2.1-230621 |
|
| 4.2.1-230403 |
|
| 4.2.0-230302 |
|
cryptography
cryptography is a package designed to expose cryptographic primitives and recipes to Python developers.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 45.0.5 |
|
| 44.0.2 |
|
| 41.0.5 |
|
| 41.0.1 |
|
cuDNN
The NVIDIA CUDA Deep Neural Network library (cuDNN) is a GPU-accelerated library of primitives for deep neural networks.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 9.2.1.18-CUDA-12.4.0 |
|
| 8.9.7.29-CUDA-12.3.0 |
|
| 8.9.2.26-CUDA-12.2.0 |
|
| 8.9.2.26-CUDA-12.1.1 |
|
| 8.8.0.121-CUDA-12.0.0 |
|
| 8.6.0.163-CUDA-11.8.0 |
|
| 8.4.1.50-CUDA-11.7.0 |
|
| 8.4.1.50-CUDA-11.6.0 |
|
| 8.2.2.26-CUDA-11.4.1 |
|
| 8.2.1.32-CUDA-11.3.1 |
|
cuSPARSELt
NVIDIA cuSPARSELt is a high-performance CUDA library dedicated to general matrix-matrix operations in which at least one operand is a sparse matrix
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.6.2.3-CUDA-12.1.1 |
|
cuTENSOR
The cuTENSOR Library is a GPU-accelerated tensor linear algebra library providing tensor contraction, reduction and elementwise operations.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.7.0.1-CUDA-12.0.0 |
|
dask
Dask natively scales Python. Dask provides advanced parallelism for analytics, enabling performance at scale for the tools you love.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2025.5.1 |
|
| 2021.9.1 |
|
deeptime
Deeptime is a general purpose Python library offering various tools to estimate dynamical models based on time-series data including conventional linear learning methods, such as Markov State Models (MSMs), Hidden Markov Models (HMMs) and Koopman models, as well as kernel and deep learning approaches such as VAMPnets and deep MSMs.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.4.4-Python-3.11.3 |
|
dftd3-lib
This is a repackaged version of the DFTD3 program by S. Grimme and his coworkers. The original program (V3.1 Rev 1) was downloaded at 2016-04-03. It has been converted to free format and encapsulated into modules.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.9 |
|
dftd4
This is a repackaged version of the DFTD3 program by S. Grimme and his coworkers. The original program (V3.1 Rev 1) was downloaded at 2016-04-03. It has been converted to free format and encapsulated into modules.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.4.0 |
|
dill
dill extends python's pickle module for serializing and de-serializing python objects to the majority of the built-in python types. Serialization is the process of converting an object to a byte stream, and the inverse of which is converting a byte stream back to on python object hierarchy.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.3.6 |
|
double-conversion
Efficient binary-decimal and decimal-binary conversion routines for IEEE doubles.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.3.0 |
|
| 3.3.0 |
|
| 3.2.0 |
|
| 3.1.5 |
|
| 3.1.5 |
|
eSpeak-NG
The eSpeak NG is a compact open source software text-to-speech synthesizer for Linux, Windows, Android and other operating systems. It supports more than 100 languages and accents. It is based on the eSpeak engine created by Jonathan Duddington.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.51 |
|
elfutils
The elfutils project provides libraries and tools for ELF files and DWARF data.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.187 |
|
| 0.187 |
|
| 0.185 |
|
expat
Expat is an XML parser library written in C. It is a stream-oriented parser in which an application registers handlers for things the parser might find in the XML document (like start tags).
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.7.1 |
|
| 2.6.4 |
|
| 2.6.2 |
|
| 2.5.0 |
|
| 2.5.0 |
|
| 2.5.0 |
|
| 2.4.9 |
|
| 2.4.8 |
|
| 2.4.8 |
|
| 2.4.1 |
|
| 2.2.9 |
|
expecttest
This library implements expect tests (also known as "golden" tests). Expect tests are a method of writing tests where instead of hard-coding the expected output of a test, you run the test to get the output, and the test framework automatically populates the expected output. If the output of the test changes, you can rerun the test with the environment variable EXPECTTEST_ACCEPT=1 to automatically update the expected output.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.1.3 |
|
| 0.1.3 |
|
fastparquet
fastparquet is a python implementation of the parquet format, aiming to integrate into python-based big data work-flows. It is used implicitly by the projects Dask, Pandas and intake-parquet.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2024.11.0 |
|
ffnvcodec
FFmpeg nvidia headers. Adds support for nvenc and nvdec. Requires Nvidia GPU and drivers to be present (picked up dynamically).
| Versions | Environment loading command (via Lmod) |
|---|---|
| 12.1.14.0 |
|
| 12.0.16.0 |
|
| 11.1.5.2 |
|
flatbuffers
FlatBuffers: Memory Efficient Serialization Library Includes the Flatbuffers compiler, C/C++ bindings and Python runtime library.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.0.7 |
|
| 2.0.0 |
|
| 2.0.0 |
|
| 2.0.0 |
|
flatbuffers-python
Python Flatbuffers runtime library.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.0 |
|
| 2.0 |
|
| 2.0 |
|
flex
Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, sometimes called a tokenizer, is a program which recognizes lexical patterns in text.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.6.4 |
|
| 2.6.4 |
|
| 2.6.4 |
|
| 2.6.4 |
|
| 2.6.4 |
|
| 2.6.4 |
|
| 2.6.4 |
|
| 2.6.4 |
|
| 2.6.4 |
|
| 2.6.4 |
|
flit
A simple packaging tool for simple packages.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.12.0 |
|
| 3.10.1 |
|
| 3.9.0 |
|
| 3.9.0 |
|
fontconfig
Fontconfig is a library designed to provide system-wide font configuration, customization and application access.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.16.2 |
|
| 2.15.0 |
|
| 2.14.2 |
|
| 2.14.2 |
|
| 2.14.0 |
|
| 2.14.0 |
|
| 2.13.94 |
|
| 2.13.93 |
|
fonttools
fontTools is a library for manipulating fonts, written in Python. The project includes the TTX tool, that can convert TrueType and OpenType fonts to and from an XML text format, which is also called TTX. It supports TrueType, OpenType, AFM and to an extent Type 1 and some Mac-specific formats.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.58.4 |
|
| 4.53.1 |
|
foss
GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2025a |
|
| 2023b |
|
| 2023a |
|
| 2022b |
|
| 2022a |
|
| 2021b |
|
| 2021a |
|
freetype
FreeType 2 is a software font engine that is designed to be small, efficient, highly customizable, and portable while capable of producing high-quality output (glyph images). It can be used in graphics libraries, display servers, font conversion tools, text image generation tools, and many other products as well.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.13.3 |
|
| 2.13.2 |
|
| 2.13.2 |
|
| 2.13.0 |
|
| 2.12.1 |
|
| 2.12.1 |
|
| 2.11.0 |
|
| 2.10.4 |
|
gc
The Boehm-Demers-Weiser conservative garbage collector can be used as a garbage collecting replacement for C malloc or C++ new.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 8.2.0 |
|
gdbm
GNU dbm (or GDBM, for short) is a library of database functions that use extensible hashing and work similar to the standard UNIX dbm. These routines are provided to a programmer needing to create and manipulate a hashed database.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.21 |
|
gettext
GNU 'gettext' is an important step for the GNU Translation Project, as it is an asset on which we may build many other steps. This package offers to programmers, translators, and even users, a well integrated set of tools and documentation
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.25 |
|
| 0.25 |
|
| 0.24 |
|
| 0.22.5 |
|
| 0.22.5 |
|
| 0.22 |
|
| 0.22 |
|
| 0.21.1 |
|
| 0.21.1 |
|
| 0.21.1 |
|
| 0.21 |
|
| 0.21 |
|
| 0.21 |
|
| 0.21 |
|
gfbf
GNU Compiler Collection (GCC) based compiler toolchain, including FlexiBLAS (BLAS and LAPACK support) and (serial) FFTW.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2025a |
|
| 2023b |
|
| 2023a |
|
| 2022b |
|
| 2022a |
|
giflib
giflib is a library for reading and writing gif images. It is API and ABI compatible with libungif which was in wide use while the LZW compression algorithm was patented.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 5.2.2 |
|
| 5.2.1 |
|
| 5.2.1 |
|
| 5.2.1 |
|
| 5.2.1 |
|
| 5.2.1 |
|
| 5.2.1 |
|
git
Git is a free and open source distributed version control system designed to handle everything from small to very large projects with speed and efficiency.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.50.1 |
|
| 2.49.0 |
|
| 2.42.0 |
|
| 2.41.0-nodocs |
|
| 2.38.1-nodocs |
|
| 2.36.0-nodocs |
|
| 2.36.0-nodocs |
|
| 2.33.1-nodocs |
|
| 2.32.0-nodocs |
|
git-lfs
Git Large File Storage (LFS) replaces large files such as audio samples, videos, datasets, and graphics with text pointers inside Git, while storing the file contents on a remote server like GitHub.com
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.5.1 |
|
glew
The OpenGL Extension Wrangler Library (GLEW) is a cross-platform open-source C/C++ extension loading library. GLEW provides efficient run-time mechanisms for determining which OpenGL extensions are supported on the target platform.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.2.0-osmesa |
|
| 2.1.0 |
|
| 2.1.0 |
|
glslang
Khronos-reference front end for GLSL/ESSL, partial front end for HLSL, and a SPIR-V generator.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 15.4.0 |
|
gnupg-bundle
GnuPG — The Universal Crypto Engine
| Versions | Environment loading command (via Lmod) |
|---|---|
| 20240306 |
|
gnuplot
Portable interactive, function plotting utility
| Versions | Environment loading command (via Lmod) |
|---|---|
| 5.4.8 |
|
| 5.4.4 |
|
gompi
GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2025a |
|
| 2023b |
|
| 2023a |
|
| 2022b |
|
| 2022a-mpi-thread-multiple |
|
| 2022a |
|
| 2021b |
|
| 2021a |
|
googlebenchmark
Google's framework for writing C++ tests on a variety of platforms
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.9.4 |
|
googletest
Google's framework for writing C++ tests on a variety of platforms
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.17.0 |
|
| 1.13.0 |
|
| 1.11.0 |
|
gperf
GNU gperf is a perfect hash function generator. For a given list of strings, it produces a hash function and hash table, in form of C or C++ code, for looking up a value depending on the input string. The hash function is perfect, which means that the hash table has no collisions, and the hash table lookup needs a single string comparison only.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.3 |
|
| 3.1 |
|
| 3.1 |
|
| 3.1 |
|
| 3.1 |
|
| 3.1 |
|
| 3.1 |
|
| 3.1 |
|
graphite2
Graphite is a "smart font" system developed specifically to handle the complexities of lesser-known languages of the world.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.3.14 |
|
| 1.3.14 |
|
| 1.3.14 |
|
groff
Groff (GNU troff) is a typesetting system that reads plain text mixed with formatting commands and produces formatted output.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.23.0 |
|
| 1.23.0 |
|
| 1.23.0 |
|
| 1.22.4 |
|
| 1.22.4 |
|
| 1.22.4 |
|
| 1.22.4 |
|
| 1.22.4 |
|
| 1.22.4 |
|
gzip
gzip (GNU zip) is a popular data compression program as a replacement for compress
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.14 |
|
| 1.13 |
|
| 1.13 |
|
| 1.13 |
|
| 1.12 |
|
| 1.12 |
|
| 1.12 |
|
| 1.10 |
|
| 1.10 |
|
h5py
HDF5 for Python (h5py) is a general-purpose Python interface to the Hierarchical Data Format library, version 5. HDF5 is a versatile, mature scientific software library designed for the fast, flexible storage of enormous amounts of data.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.7.0 |
|
| 3.6.0 |
|
| 3.2.1 |
|
hatch-jupyter-builder
Hatch Jupyter Builder is a plugin for the hatchling Python build backend. It is primarily targeted for package authors who are providing JavaScript as part of their Python packages. Typical use cases are Jupyter Lab Extensions and Jupyter Widgets.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.9.1 |
|
| 0.9.1 |
|
hatchling
Extensible, standards compliant build backend used by Hatch, a modern, extensible Python project manager.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.27.0 |
|
| 1.27.0 |
|
| 1.18.0 |
|
| 1.18.0 |
|
help2man
help2man produces simple manual pages from the '--help' and '--version' output of other commands.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.49.3 |
|
| 1.49.3 |
|
| 1.49.3 |
|
| 1.49.3 |
|
| 1.49.3 |
|
| 1.49.2 |
|
| 1.49.2 |
|
| 1.48.3 |
|
| 1.48.3 |
|
hiredis
Hiredis is a minimalistic C client library for the Redis database. It is minimalistic because it just adds minimal support for the protocol, but at the same time it uses a high level printf-alike API in order to make it much higher level than otherwise suggested by its minimal code base and the lack of explicit bindings for every Redis command.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.2.0 |
|
hwloc
The Portable Hardware Locality (hwloc) software package provides a portable abstraction (across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various system attributes such as cache and memory information as well as the locality of I/O devices such as network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering information about modern computing hardware so as to exploit it accordingly and efficiently.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.11.2 |
|
| 2.9.2 |
|
| 2.9.1 |
|
| 2.8.0 |
|
| 2.7.1 |
|
| 2.7.1 |
|
| 2.5.0 |
|
| 2.4.1 |
|
hypothesis
Hypothesis is an advanced testing library for Python. It lets you write tests which are parametrized by a source of examples, and then generates simple and comprehensible examples that make your tests fail. This lets you find more bugs in your code with less work.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 6.133.2 |
|
| 6.82.0 |
|
| 6.68.2 |
|
| 6.46.7 |
|
| 6.14.6 |
|
| 6.13.1 |
|
iimpi
Intel C/C++ and Fortran compilers, alongside Intel MPI.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2023a |
|
| 2022a |
|
imkl
Intel oneAPI Math Kernel Library
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2023.1.0 |
|
| 2022.1.0 |
|
| 2022.0.1 |
|
| 2021.4.0 |
|
imkl-FFTW
FFTW interfaces using Intel oneAPI Math Kernel Library
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2022.1.0 |
|
impi
Intel MPI Library, compatible with MPICH ABI
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2021.9.0 |
|
| 2021.6.0 |
|
intel
Compiler toolchain including Intel compilers, Intel MPI and Intel Math Kernel Library (MKL).
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2022a |
|
intel-compilers
Intel C, C++ & Fortran compilers (classic and oneAPI)
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2023.2.1 |
|
| 2023.1.0 |
|
| 2023.0.0 |
|
| 2022.1.0 |
|
| 2021.4.0 |
|
intltool
intltool is a set of tools to centralize translation of many different file formats using GNU gettext-compatible PO files.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.51.0 |
|
| 0.51.0 |
|
| 0.51.0 |
|
| 0.51.0 |
|
| 0.51.0 |
|
| 0.51.0 |
|
| 0.51.0 |
|
| 0.51.0 |
|
iomkl
Intel Cluster Toolchain Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MKL & OpenMPI.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2023a |
|
itac
The Intel Trace Collector is a low-overhead tracing library that performs event-based tracing in applications. The Intel Trace Analyzer provides a convenient way to monitor application activities gathered by the Intel Trace Collector through graphical displays.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2021.6.0 |
|
jbig2enc
JBIG2 encodes bi-level (1 bpp) images using a number of clever tricks to get better compression than G4.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.30 |
|
jbigkit
JBIG-KIT is a software implementation of the JBIG1 data compression standard (ITU-T T.82), which was designed for bi-level image data, such as scanned documents.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.1 |
|
| 2.1 |
|
| 2.1 |
|
| 2.1 |
|
| 2.1 |
|
| 2.1 |
|
| 2.1 |
|
| 2.1 |
|
jedi
Jedi - an awesome autocompletion, static analysis and refactoring library for Python.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.19.2 |
|
| 0.19.1 |
|
jq
jq is a lightweight and flexible command-line JSON processor.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.6 |
|
json-c
JSON-C implements a reference counting object model that allows you to easily construct JSON objects in C, output them as JSON formatted strings and parse JSON formatted strings back into the C representation of JSON objects.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.16 |
|
jupyter-code-proxy
Plugin for jupyter-server-proxy to run an instance of Visual Studio Code Server from JupyterLab.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.0.0 |
|
jupyter-server
The Jupyter Server provides the backend (i.e. the core services, APIs, and REST endpoints) for Jupyter web applications like Jupyter notebook, JupyterLab, and Voila.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.17.0 |
|
| 2.14.0 |
|
| 2.7.2 |
|
| 1.21.0 |
|
jupyter-server-proxy
Jupyter Server Proxy lets you run arbitrary external processes (such as RStudio, Shiny Server, Syncthing, PostgreSQL, Code Server, etc) alongside your notebook server and provide authenticated web access to them using a path like /rstudio next to others like /lab. Alongside the python package that provides the main functionality, the JupyterLab extension (@jupyterlab/server-proxy) provides buttons in the JupyterLab launcher window to get to RStudio for example.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.4.0 |
|
| 4.1.2 |
|
| 4.1.2 |
|
jupyterlab_nvdashboard
NVDashboard is a JupyterLab extension for displaying GPU usage dashboards. It enables JupyterLab users to visualize system hardware metrics within the same interactive environment they use for development. Supported metrics include: GPU-compute utilization, GPU-memory consumption, PCIe throughput and NVLink throughput
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.13.0 |
|
| 0.11.0 |
|
jupyterlmod
Jupyter interactive notebook server extension that allows users to interact with environment modules before launching kernels. The extension uses Lmod's Python interface to accomplish module-related tasks like loading, unloading, saving collections, etc.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 5.3.0 |
|
| 5.2.1 |
|
libGLU
The OpenGL Utility Library (GLU) is a computer graphics library for OpenGL.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 9.0.3 |
|
| 9.0.3 |
|
| 9.0.2 |
|
| 9.0.2 |
|
| 9.0.2 |
|
| 9.0.1 |
|
libaio
Asynchronous input/output library that uses the kernels native interface.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.3.112 |
|
libarchive
Multi-format archive and compression library
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.8.1 |
|
| 3.7.7 |
|
| 3.7.4 |
|
| 3.7.2 |
|
| 3.6.2 |
|
| 3.6.1 |
|
| 3.6.1 |
|
| 3.6.1 |
|
| 3.5.1 |
|
| 3.5.1 |
|
libcerf
libcerf is a self-contained numeric library that provides an efficient and accurate implementation of complex error functions, along with Dawson, Faddeeva, and Voigt functions.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.3 |
|
| 2.1 |
|
libde265
libde265 is an open source implementation of the h.265 video codec
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.0.15 |
|
libdeflate
Heavily optimized library for DEFLATE/zlib/gzip compression and decompression.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.24 |
|
| 1.20 |
|
| 1.19 |
|
| 1.18 |
|
| 1.10 |
|
libdrm
Direct Rendering Manager runtime library.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.4.117 |
|
| 2.4.115 |
|
| 2.4.110 |
|
| 2.4.110 |
|
| 2.4.107 |
|
| 2.4.106 |
|
libepoxy
Epoxy is a library for handling OpenGL function pointer management for you
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.5.10 |
|
| 1.5.10 |
|
| 1.5.8 |
|
| 1.5.8 |
|
libevent
The libevent API provides a mechanism to execute a callback function when a specific event occurs on a file descriptor or after a timeout has been reached. Furthermore, libevent also support callbacks due to signals or regular timeouts.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.1.12 |
|
| 2.1.12 |
|
| 2.1.12 |
|
| 2.1.12 |
|
| 2.1.12 |
|
| 2.1.12 |
|
| 2.1.12 |
|
libfabric
Libfabric is a core component of OFI. It is the library that defines and exports the user-space API of OFI, and is typically the only software that applications deal with directly. It works in conjunction with provider libraries, which are often integrated directly into libfabric.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.0.0 |
|
| 1.19.0 |
|
| 1.18.0 |
|
| 1.16.1 |
|
| 1.15.1 |
|
| 1.13.2 |
|
| 1.12.1 |
|
libffi
The libffi library provides a portable, high level programming interface to various calling conventions. This allows a programmer to call any function specified by a call interface description at run-time.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.5.1 |
|
| 3.4.5 |
|
| 3.4.5 |
|
| 3.4.4 |
|
| 3.4.4 |
|
| 3.4.4 |
|
| 3.4.2 |
|
| 3.4.2 |
|
| 3.4.2 |
|
| 3.3 |
|
libgd
GD is an open source code library for the dynamic creation of images by programmers.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.3.3 |
|
| 2.3.3 |
|
| 2.3.3 |
|
libgeotiff
Library for reading and writing coordinate system information from/to GeoTIFF files
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.7.1 |
|
| 1.7.1 |
|
libgit2
libgit2 is a portable, pure C implementation of the Git core methods provided as a re-entrant linkable library with a solid API, allowing you to write native speed custom Git applications in any language which supports C bindings.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.7.1 |
|
| 1.4.3 |
|
libglvnd
libglvnd is a vendor-neutral dispatch layer for arbitrating OpenGL API calls between multiple vendors.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.7.0 |
|
| 1.6.0 |
|
| 1.4.0 |
|
| 1.4.0 |
|
| 1.3.3 |
|
| 1.3.3 |
|
libheif
libheif is an HEIF and AVIF file format decoder and encoder
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.19.5 |
|
libiconv
Libiconv converts from one character encoding to another through Unicode conversion
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.18 |
|
| 1.18 |
|
| 1.17 |
|
| 1.17 |
|
| 1.17 |
|
| 1.17 |
|
| 1.16 |
|
libidn2
Libidn2 implements the revised algorithm for internationalized domain names called IDNA2008/TR46.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.3.8 |
|
| 2.3.7 |
|
| 2.3.2 |
|
libjpeg-turbo
libjpeg-turbo is a fork of the original IJG libjpeg which uses SIMD to accelerate baseline JPEG compression and decompression. libjpeg is a library that implements JPEG image encoding, decoding and transcoding.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.1.0 |
|
| 3.0.1 |
|
| 3.0.1 |
|
| 2.1.5.1 |
|
| 2.1.3 |
|
| 2.1.3 |
|
| 2.0.6 |
|
| 2.0.6 |
|
| 2.0.6 |
|
libnsl
The libnsl package contains the public client interface for NIS(YP).
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.3.0 |
|
libogg
Ogg is a multimedia container format, and the native file and stream format for the Xiph.org multimedia codecs.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.3.5 |
|
| 1.3.5 |
|
libopus
Opus is a totally open, royalty-free, highly versatile audio codec. Opus is unmatched for interactive speech and music transmission over the Internet, but is also intended for storage and streaming applications. It is standardized by the Internet Engineering Task Force (IETF) as RFC 6716 which incorporated technology from Skype’s SILK codec and Xiph.Org’s CELT codec.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.3.1 |
|
libpciaccess
Generic PCI access library.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.18.1 |
|
| 0.18.1 |
|
| 0.17 |
|
| 0.17 |
|
| 0.17 |
|
| 0.16 |
|
| 0.16 |
|
| 0.16 |
|
| 0.16 |
|
libpng
libpng is the official PNG reference library
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.6.48 |
|
| 1.6.43 |
|
| 1.6.40 |
|
| 1.6.39 |
|
| 1.6.37 |
|
| 1.6.37 |
|
| 1.6.37 |
|
| 1.6.37 |
|
| 1.2.58 |
|
libpsl
C library for the Public Suffix List
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.21.5 |
|
| 0.21.5 |
|
libreadline
The GNU Readline library provides a set of functions for use by applications that allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. The Readline library includes additional functions to maintain a list of previously-entered command lines, to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 8.2 |
|
| 8.2 |
|
| 8.2 |
|
| 8.2 |
|
| 8.2 |
|
| 8.2 |
|
| 8.2 |
|
| 8.1.2 |
|
| 8.1.2 |
|
| 8.1 |
|
| 8.1 |
|
| 8.0 |
|
libsndfile
Libsndfile is a C library for reading and writing files containing sampled sound (such as MS Windows WAV and the Apple/SGI AIFF format) through one standard library interface.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.1.0 |
|
libsodium
Sodium is a modern, easy-to-use software library for encryption, decryption, signatures, password hashing and more.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.0.20 |
|
| 1.0.19 |
|
| 1.0.18 |
|
| 1.0.18 |
|
| 1.0.18 |
|
libtasn1
Libtasn1 is the ASN.1 library used by GnuTLS, GNU Shishi and some other packages. It was written by Fabio Fiorina, and has been shipped as part of GnuTLS for some time but is now a proper GNU package.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.18.0 |
|
libtirpc
Libtirpc is a port of Suns Transport-Independent RPC library to Linux.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.3.3 |
|
| 1.3.2 |
|
| 1.3.2 |
|
libtommath
LibTomMath is a free open source portable number theoretic multiple-precision integer (MPI) library written entirely in C.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.3.0 |
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libtool
GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries behind a consistent, portable interface.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.5.4 |
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| 2.5.4 |
|
| 2.4.7 |
|
| 2.4.7 |
|
| 2.4.7 |
|
| 2.4.7 |
|
| 2.4.7 |
|
| 2.4.7 |
|
| 2.4.6 |
|
| 2.4.6 |
|
libunistring
This library provides functions for manipulating Unicode strings and for manipulating C strings according to the Unicode standard.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.3 |
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| 1.3 |
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| 1.0 |
|
libunwind
The primary goal of libunwind is to define a portable and efficient C programming interface (API) to determine the call-chain of a program. The API additionally provides the means to manipulate the preserved (callee-saved) state of each call-frame and to resume execution at any point in the call-chain (non-local goto). The API supports both local (same-process) and remote (across-process) operation. As such, the API is useful in a number of applications
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.6.2 |
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| 1.6.2 |
|
| 1.6.2 |
|
| 1.6.2 |
|
| 1.5.0 |
|
| 1.4.0 |
|
libvorbis
Ogg Vorbis is a fully open, non-proprietary, patent-and-royalty-free, general-purpose compressed audio format
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.3.7 |
|
libwebp
WebP is a modern image format that provides superior lossless and lossy compression for images on the web. Using WebP, webmasters and web developers can create smaller, richer images that make the web faster.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.5.0 |
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| 1.4.0 |
|
| 1.3.2 |
|
| 1.2.4 |
|
| 1.2.0 |
|
libxc
Libxc is a library of exchange-correlation functionals for density-functional theory. The aim is to provide a portable, well tested and reliable set of exchange and correlation functionals.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 6.2.2-disable-fhc |
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| 5.2.3 |
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| 5.2.3 |
|
| 5.2.3 |
|
| 5.1.6 |
|
| 5.1.6 |
|
| 5.1.6 |
|
libxml2
Libxml2 is the XML C parser and toolchain developed for the Gnome project (but usable outside of the Gnome platform).
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.14.3 |
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| 2.13.4 |
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| 2.12.7 |
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| 2.11.5 |
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| 2.11.4 |
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| 2.10.3 |
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| 2.9.13 |
|
| 2.9.13 |
|
| 2.9.10 |
|
| 2.9.10 |
|
libxslt
Libxslt is the XSLT C library developed for the GNOME project (but usable outside of the Gnome platform).
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.1.43 |
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| 1.1.38 |
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| 1.1.38 |
|
| 1.1.34 |
|
| 1.1.34 |
|
libxsmm
LIBXSMM is a library for small dense and small sparse matrix-matrix multiplications targeting Intel Architecture (x86).
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.17 |
|
| 1.17 |
|
libyaml
LibYAML is a YAML parser and emitter written in C.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.2.5 |
|
| 0.2.5 |
|
| 0.2.5 |
|
| 0.2.5 |
|
| 0.2.5 |
|
| 0.2.5 |
|
linaro-forge
Linaro Forge combines Linaro DDT, the leading debugger for time-saving high performance application debugging, Linaro MAP, the trusted performance profiler for invaluable optimization advice across native and Python HPC codes, and Linaro Performance Reports for advanced reporting capabilities.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 24.1.1 |
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| 23.0.4 |
|
lit
lit is a portable tool for executing LLVM and Clang style test suites, summarizing their results, and providing indication of failures.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 18.1.7 |
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lxml
The lxml XML toolkit is a Pythonic binding for the C libraries libxml2 and libxslt.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 6.0.0 |
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| 4.9.3 |
|
| 4.9.2 |
|
| 4.9.1 |
|
lz4
LZ4 is lossless compression algorithm, providing compression speed at 400 MB/s per core. It features an extremely fast decoder, with speed in multiple GB/s per core.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.10.0 |
|
| 1.10.0 |
|
| 1.9.4 |
|
| 1.9.4 |
|
| 1.9.4 |
|
| 1.9.4 |
|
| 1.9.3 |
|
| 1.9.3 |
|
| 1.9.3 |
|
| 1.9.3 |
|
magma
The MAGMA project aims to develop a dense linear algebra library similar to LAPACK but for heterogeneous/hybrid architectures, starting with current Multicore+GPU systems.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.6.2-CUDA-11.7.0 |
|
| 2.6.2-CUDA-11.6.0 |
|
| 2.6.1-CUDA-11.3.1 |
|
make
GNU version of make utility
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.4.1 |
|
| 4.4.1 |
|
| 4.4.1 |
|
| 4.3 |
|
makeinfo
makeinfo is part of the Texinfo project, the official documentation format of the GNU project.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 7.0.3 |
|
| 7.0.3 |
|
| 6.7-minimal |
|
matplotlib
matplotlib is a python 2D plotting library which produces publication quality figures in a variety of hardcopy formats and interactive environments across platforms. matplotlib can be used in python scripts, the python and ipython shell, web application servers, and six graphical user interface toolkits.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.10.3 |
|
| 3.7.2 |
|
| 3.4.3 |
|
| 3.4.2 |
|
maturin
This project is meant as a zero configuration replacement for setuptools-rust and milksnake. It supports building wheels for python 3.5+ on windows, linux, mac and freebsd, can upload them to pypi and has basic pypy and graalpy support.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.9.1 |
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| 1.8.3 |
|
| 1.4.0-Rust-1.75.0 |
|
| 1.3.1 |
|
| 1.1.0 |
|
meson-python
Python build backend (PEP 517) for Meson projects
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.18.0 |
|
| 0.13.2 |
|
model-angelo
ModelAngelo is an automatic atomic model building program for cryo-EM maps.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.0.13 |
|
monai
Medical Open Network for AI
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.2.0 |
|
| 1.0.1 |
|
mpi4py
MPI for Python (mpi4py) provides bindings of the Message Passing Interface (MPI) standard for the Python programming language, allowing any Python program to exploit multiple processors.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.1.4 |
|
mumax3
GPU accelerated micromagnetic simulator
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.11.1-CUDA-12.1.1 |
|
| 3.10-CUDA-12.1.1 |
|
nano
a simple editor, inspired by Pico
| Versions | Environment loading command (via Lmod) |
|---|---|
| 6.4 |
|
| 6.2 |
|
ncurses
The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 6.5 |
|
| 6.5 |
|
| 6.5 |
|
| 6.5 |
|
| 6.4 |
|
| 6.4 |
|
| 6.4 |
|
| 6.3 |
|
| 6.3 |
|
| 6.3 |
|
| 6.2 |
|
| 6.2 |
|
| 6.2 |
|
| 6.1 |
|
netCDF
NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.9.2 |
|
| 4.9.0 |
|
| 4.8.1 |
|
netCDF-Fortran
NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.6.1 |
|
| 4.6.0 |
|
| 4.5.3 |
|
nettle
Nettle is a cryptographic library that is designed to fit easily in more or less any context: In crypto toolkits for object-oriented languages (C++, Python, Pike, ...), in applications like LSH or GNUPG, or even in kernel space.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.8 |
|
| 3.7.3 |
|
networkx
NetworkX is a Python package for the creation, manipulation, and study of the structure, dynamics, and functions of complex networks.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.1 |
|
| 2.8.4 |
|
| 2.6.3 |
|
| 2.5.1 |
|
nlohmann_json
JSON for Modern C++
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.11.2 |
|
| 3.10.5 |
|
nodejs
Node.js is a platform built on Chrome's JavaScript runtime for easily building fast, scalable network applications. Node.js uses an event-driven, non-blocking I/O model that makes it lightweight and efficient, perfect for data-intensive real-time applications that run across distributed devices.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 22.17.1 |
|
| 20.9.0 |
|
| 18.17.1 |
|
| 16.15.1 |
|
nsync
nsync is a C library that exports various synchronization primitives, such as mutexes
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.25.0 |
|
| 1.24.0 |
|
| 1.24.0 |
|
numactl
The numactl program allows you to run your application program on specific cpu's and memory nodes. It does this by supplying a NUMA memory policy to the operating system before running your program. The libnuma library provides convenient ways for you to add NUMA memory policies into your own program.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.0.19 |
|
| 2.0.16 |
|
| 2.0.16 |
|
| 2.0.16 |
|
| 2.0.14 |
|
| 2.0.14 |
|
| 2.0.14 |
|
| 2.0.14 |
|
numba
Numba is an Open Source NumPy-aware optimizing compiler for Python sponsored by Continuum Analytics, Inc. It uses the remarkable LLVM compiler infrastructure to compile Python syntax to machine code.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.58.1 |
|
| 0.53.1 |
|
nvBowtie
nvBowtie is a GPU-accelerated re-engineering of Bowtie2, a very widely used short-read aligner. While being completely rewritten from scratch, nvBowtie reproduces many (though not all) of the features of Bowtie2.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.00.1 |
|
nvofbf
NVHPC based compiler toolchain, including OpenMPI for MPI support.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2023b |
|
nvompic
NVHPC based compiler toolchain, including OpenMPI for MPI support.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2023b |
|
| 2022b |
|
| 2022a |
|
| 2021b |
|
ollama
Get up and running with large language models.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.6.2-CUDA-12.4.0 |
|
openfe
The OpenFE toolkit provides a free and open-source framework for alchemical free energy calculations.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.3.0-conda |
|
| 1.3.0 |
|
p11-kit
Provides a way to load and enumerate PKCS#11 modules. Provides a standard configuration setup for installing PKCS#11 modules in such a way that they're discoverable. Also solves problems with coordinating the use of PKCS#11 by different components or libraries living in the same process.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.24.1 |
|
p7zip
p7zip is a quick port of 7z.exe and 7za.exe (CLI version of 7zip) for Unix. 7-Zip is a file archiver with highest compression ratio.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 17.04 |
|
patchelf
PatchELF is a small utility to modify the dynamic linker and RPATH of ELF executables.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.18.0 |
|
| 0.18.0 |
|
| 0.18.0 |
|
| 0.18.0 |
|
pixman
Pixman is a low-level software library for pixel manipulation, providing features such as image compositing and trapezoid rasterization. Important users of pixman are the cairo graphics library and the X server.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.43.4 |
|
| 0.42.2 |
|
| 0.42.2 |
|
| 0.40.0 |
|
| 0.40.0 |
|
| 0.40.0 |
|
| 0.40.0 |
|
pkg-config
pkg-config is a helper tool used when compiling applications and libraries. It helps you insert the correct compiler options on the command line so an application can use gcc -o test test.c `pkg-config --libs --cflags glib-2.0` for instance, rather than hard-coding values on where to find glib (or other libraries).
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.29.2 |
|
| 0.29.2 |
|
| 0.29.2 |
|
| 0.29.2 |
|
pkgconf
pkgconf is a program which helps to configure compiler and linker flags for development libraries. It is similar to pkg-config from freedesktop.org.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.4.3 |
|
| 2.3.0 |
|
| 2.2.0 |
|
| 2.0.3 |
|
| 1.9.5 |
|
| 1.9.3 |
|
| 1.8.0 |
|
| 1.8.0 |
|
| 1.8.0 |
|
pkgconfig
pkgconfig is a Python module to interface with the pkg-config command line tool
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.5.5-python |
|
| 1.5.5-python |
|
| 1.5.4-python |
|
pocl
PoCL is a portable open source (MIT-licensed) implementation of the OpenCL standard (1.2 with some 2.0 features supported).
| Versions | Environment loading command (via Lmod) |
|---|---|
| 6.0 |
|
| 1.8 |
|
poetry
Python packaging and dependency management made easy. Poetry helps you declare, manage and install dependencies of Python projects, ensuring you have the right stack everywhere.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.1.3 |
|
| 2.1.2 |
|
| 1.6.1 |
|
| 1.5.1 |
|
poppler
Poppler is a PDF rendering library
| Versions | Environment loading command (via Lmod) |
|---|---|
| 24.04.0 |
|
pro-viz
pro-viz env setter
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.10.1 |
|
| 1.10.0 |
|
| 1.9.4 |
|
| 1.9.3 |
|
| 1.9.2 |
|
protobuf
Google Protocol Buffers
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.19.4 |
|
| 3.17.3 |
|
| 3.17.3 |
|
protobuf-python
Python Protocol Buffers runtime library.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.19.4 |
|
| 3.17.3 |
|
| 3.17.3 |
|
psycopg
Psycopg is the most popular PostgreSQL adapter for the Python programming language.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.1.18 |
|
pybind11
pybind11 is a lightweight header-only library that exposes C++ types in Python and vice versa, mainly to create Python bindings of existing C++ code.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.13.6 |
|
| 2.11.1 |
|
| 2.10.3 |
|
| 2.9.2 |
|
| 2.7.1 |
|
| 2.6.2 |
|
pydicom
Pure python package for DICOM medical file reading and writing.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.2.2 |
|
pytest-rerunfailures
pytest plugin to re-run tests to eliminate flaky failures.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 11.1 |
|
pytest-shard
pytest plugin to support parallelism across multiple machines. Shards tests based on a hash of their test name enabling easy parallelism across machines, suitable for a wide variety of continuous integration services. Tests are split at the finest level of granularity, individual test cases, enabling parallelism even if all of your tests are in a single file (or even single parameterized test method).
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.1.2 |
|
python-mujoco
This package is the canonical Python bindings for the MuJoCo physics engine. The mujoco package provides direct access to raw MuJoCo C API functions, structs, constants, and enumerations. Structs are provided as Python classes, with Pythonic initialization and deletion semantics.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.2.2 |
|
qdp-jit
QDP-JIT
| Versions | Environment loading command (via Lmod) |
|---|---|
| 82973e9-CUDA-12.4.0 |
|
qmp
QMP implementation over MPICH and single node
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3010fef-CUDA-12.4.0 |
|
quda
QUDA is a library for performing calculations in lattice QCD on graphics processing units (GPUs), leveraging NVIDIA's CUDA platform.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.1.0-e23cd7e-CUDA-12.4.0 |
|
rclone
Rclone is a command line program to sync files and directories to and from a variety of online storage services
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.67.0 |
|
| 1.60.1 |
|
re2c
re2c is a free and open-source lexer generator for C and C++. Its main goal is generating fast lexers: at least as fast as their reasonably optimized hand-coded counterparts. Instead of using traditional table-driven approach, re2c encodes the generated finite state automata directly in the form of conditional jumps and comparisons.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.1 |
|
| 3.1 |
|
| 2.2 |
|
s3cmd
Amazon S3 Tools: Command Line S3 Client Software and S3 Backup.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.3.0 |
|
scikit-build
Scikit-Build, or skbuild, is an improved build system generator for CPython C/C++/Fortran/Cython extensions.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.18.1 |
|
| 0.18.1 |
|
| 0.17.6 |
|
| 0.17.6 |
|
scikit-build-core
Scikit-build-core is a complete ground-up rewrite of scikit-build on top of modern packaging APIs. It provides a bridge between CMake and the Python build system, allowing you to make Python modules with CMake.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.11.5 |
|
| 0.11.1 |
|
scikit-image
scikit-image is a collection of algorithms for image processing.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.18.3 |
|
scikit-learn
Scikit-learn integrates machine learning algorithms in the tightly-knit scientific Python world, building upon numpy, scipy, and matplotlib. As a machine-learning module, it provides versatile tools for data mining and analysis in any field of science and engineering. It strives to be simple and efficient, accessible to everybody, and reusable in various contexts.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.4.2 |
|
| 0.24.2 |
|
setuptools-rust
setuptools-rust is a plugin for setuptools to build Rust Python extensions implemented with PyO3 or rust-cpython.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.11.0 |
|
| 1.11.0 |
|
| 1.8.0 |
|
| 1.6.0 |
|
snappy
Snappy is a compression/decompression library. It does not aim for maximum compression, or compatibility with any other compression library; instead, it aims for very high speeds and reasonable compression.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.2.2 |
|
| 1.1.10 |
|
| 1.1.10 |
|
| 1.1.9 |
|
| 1.1.9 |
|
| 1.1.8 |
|
sonic
Sonic is a simple algorithm for speeding up or slowing down speech. However, it's optimized for speed ups of over 2X, unlike previous algorithms for changing speech rate. The Sonic library is a very simple ANSI C library that is designed to easily be integrated into streaming voice applications, like TTS back ends.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 20180202 |
|
spglib
Spglib is a C library for finding and handling crystal symmetries.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.0.2 |
|
spglib-python
Spglib for Python. Spglib is a library for finding and handling crystal symmetries written in C.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.16.1 |
|
spin
Developer tool for scientific Python libraries
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.14 |
|
tbb
Intel(R) Threading Building Blocks (Intel(R) TBB) lets you easily write parallel C++ programs that take full advantage of multicore performance, that are portable, composable and have future-proof scalability.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2021.13.0 |
|
| 2020.3 |
|
tcsh
Tcsh is an enhanced, but completely compatible version of the Berkeley UNIX C shell (csh). It is a command language interpreter usable both as an interactive login shell and a shell script command processor. It includes a command-line editor, programmable word completion, spelling correction, a history mechanism, job control and a C-like syntax.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 6.24.01 |
|
| 6.24.01 |
|
tensorboard
TensorBoard is a suite of web applications for inspecting and understanding your TensorFlow runs and graphs.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.8.0 |
|
tesseract
Tesseract is an optical character recognition engine
| Versions | Environment loading command (via Lmod) |
|---|---|
| 5.5.0 |
|
| 5.5.0 |
|
| 5.4.1 |
|
tornado
Tornado is a Python web framework and asynchronous networking library.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 6.5.1 |
|
| 6.5.1 |
|
| 6.4 |
|
| 6.3.2 |
|
tqdm
A fast, extensible progress bar for Python and CLI
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.66.1 |
|
| 4.61.2 |
|
typing-extensions
Typing Extensions - Backported and Experimental Type Hints for Python
| Versions | Environment loading command (via Lmod) |
|---|---|
| 4.14.1 |
|
| 4.10.0 |
|
| 4.9.0 |
|
| 4.4.0 |
|
| 3.10.0.0 |
|
umpire
Umpire is a resource management library that allows the discovery, provision, and management of memory on machines with multiple memory devices like NUMA and GPUs.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2024.02.0-CUDA-11.7.0 |
|
utf8proc
utf8proc is a small, clean C library that provides Unicode normalization, case-folding, and other operations for data in the UTF-8 encoding.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.9.0 |
|
| 2.8.0 |
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util-linux
Set of Linux utilities
| Versions | Environment loading command (via Lmod) |
|---|---|
| 2.41 |
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| 2.41 |
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| 2.40 |
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| 2.40 |
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| 2.39 |
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| 2.39 |
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| 2.38 |
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| 2.38 |
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| 2.37 |
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| 2.36 |
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vermouth-martinize
Martinize2 and vermouth: The ultimate resolution transformation tools Martinize2 is aimed at producing coarse-grained structures and topologies from an atomistic structure. Martinize is primarily developed for the Martini coarse-grained force field and the Gromacs simulation engine. Vermouth (for VERsatile, MOdular, and Universal Tranformation Helper) is the python library that powers Martinize2. It allows to describe and apply transformation on molecular structures and topologies using graph algorithms.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.13.0-Python-3.11.3 |
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virtualenv
A tool for creating isolated virtual python environments.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 20.32.0 |
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| 20.29.2 |
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| 20.24.6 |
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| 20.23.1 |
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x264
x264 is a free software library and application for encoding video streams into the H.264/MPEG-4 AVC compression format, and is released under the terms of the GNU GPL.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 20231019 |
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| 20230226 |
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| 20220620 |
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| 20210414 |
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x265
x265 is a free software library and application for encoding video streams into the H.265 AVC compression format, and is released under the terms of the GNU GPL.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 3.5 |
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| 3.5 |
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| 3.5 |
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| 3.5 |
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xorg-macros
X.org macros utilities.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.20.2 |
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| 1.20.1 |
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| 1.20.0 |
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| 1.20.0 |
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| 1.19.3 |
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| 1.19.3 |
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| 1.19.3 |
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| 1.19.3 |
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| 1.19.3 |
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xprop
The xprop utility is for displaying window and font properties in an X server. One window or font is selected using the command line arguments or possibly in the case of a window, by clicking on the desired window. A list of properties is then given, possibly with formatting information.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.2.7 |
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| 1.2.5 |
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yaml-cpp
yaml-cpp is a YAML parser and emitter in C++ matching the YAML 1.2 spec.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 0.6.3 |
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zlib
zlib is designed to be a free, general-purpose, legally unencumbered -- that is, not covered by any patents -- lossless data-compression library for use on virtually any computer hardware and operating system.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.3.1 |
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| 1.3.1 |
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| 1.3.1 |
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| 1.3.1 |
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| 1.2.13 |
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| 1.2.13 |
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| 1.2.13 |
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| 1.2.12 |
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| 1.2.12 |
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| 1.2.12 |
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| 1.2.11 |
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| 1.2.11 |
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| 1.2.11 |
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zsh
Zsh is a shell designed for interactive use, although it is also a powerful scripting language.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 5.9 |
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zstd
Zstandard is a real-time compression algorithm, providing high compression ratios. It offers a very wide range of compression/speed trade-off, while being backed by a very fast decoder. It also offers a special mode for small data, called dictionary compression, and can create dictionaries from any sample set.
| Versions | Environment loading command (via Lmod) |
|---|---|
| 1.5.7 |
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| 1.5.6 |
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| 1.5.6 |
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| 1.5.5 |
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| 1.5.5 |
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| 1.5.2 |
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| 1.5.2 |
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| 1.5.0 |
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| 1.5.0 |
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| 1.4.9 |
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Ostatnia aktualizacja: 13 listopada 2025