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HELIOS software

Uwaga

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ADF

ADF Quantum Chemistry Package with GPGPU support (AMS)

Versions:

Module Default
module load ADF/2024.102
module load ADF/2023.104

AMS

ADF Quantum Chemistry Package with GPGPU support (AMS)

Versions:

Module Default
module load AMS/2024.102
module load AMS/2023.104

ANSYS

ANSYS simulation software enables organizations to confidently predict how their products will operate in the real world. We believe that every product is a promise of something greater.

Versions:

Module Default
module load ANSYS/2024R1

Autoconf

Autoconf is an extensible package of M4 macros that produce shell scripts to automatically configure software source code packages. These scripts can adapt the packages to many kinds of UNIX-like systems without manual user intervention. Autoconf creates a configuration script for a package from a template file that lists the operating system features that the package can use, in the form of M4 macro calls.

Versions:

Module Default
module load Autoconf/2.71

Automake

Automake: GNU Standards-compliant Makefile generator

Versions:

Module Default
module load Automake/1.16.5

Autotools

This bundle collect the standard GNU build tools: Autoconf, Automake and libtool

Versions:

Module Default
module load Autotools/20220317

Bison

Bison is a general-purpose parser generator that converts an annotated context-free grammar into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.

Versions:

Module Default
module load Bison/3.8.2

CMake

CMake, the cross-platform, open-source build system. CMake is a family of tools designed to build, test and package software.

Versions:

Module Default
module load CMake/3.26.5

CUDA

CUDA (formerly Compute Unified Device Architecture) is a parallel computing platform and programming model created by NVIDIA and implemented by the graphics processing units (GPUs) that they produce. CUDA gives developers access to the virtual instruction set and memory of the parallel computational elements in CUDA GPUs.

Versions:

Module Default
module load CUDA/12.4.0
module load CUDA/12.2.2

CrayCCE

Toolchain using Cray compiler wrapper, using PrgEnv-cray (PE release: December 2023).

Versions:

Module Default
module load CrayCCE/23.12

GCC

The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).

Versions:

Module Default
module load GCC/13.2.0
module load GCC/12.3.0

GCCcore

The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).

Versions:

Module Default
module load GCCcore/13.2.0
module load GCCcore/12.3.0

Gaussian

Gaussian G16 quantum chemistry package.

Versions:

Module Default
module load Gaussian/g16.C.01

Geant4-data

Datasets for Geant4.

Versions:

Module Default
module load Geant4-data/11.2.2

Go

Go is an open source programming language that makes it easy to build simple, reliable, and efficient software.

Versions:

Module Default
module load Go/1.22.1

HAlign

HAlign 3: Fast multiple alignment of ultra-large numbers of similar DNA/RNA sequences

Versions:

Module Default
module load HAlign/3.0.0-Java-21.0.2

Java

Java Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers.

Versions:

Module Default
module load Java/21.0.2
module load Java/11.0.20

Lua

Lua is a powerful, fast, lightweight, embeddable scripting language. Lua combines simple procedural syntax with powerful data description constructs based on associative arrays and extensible semantics. Lua is dynamically typed, runs by interpreting bytecode for a register-based virtual machine, and has automatic memory management with incremental garbage collection, making it ideal for configuration, scripting, and rapid prototyping.

Versions:

Module Default
module load Lua/5.3.5

LuaRocks

LuaRocks is the package manager for Lua modules. It allows you to create and install Lua modules as self-contained packages called rocks.

Versions:

Module Default
module load LuaRocks/3.11.1

M4

GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible although it has some extensions (for example, handling more than 9 positional parameters to macros). GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.

Versions:

Module Default
module load M4/1.4.19
module load M4/1.4.18

MVAPICH

This is an MPI 3.0 implementation. It is based on MPICH2 and MVICH.

Versions:

Module Default
module load MVAPICH/3.0

MinIO-Client

MinIO Client (mc) provides a modern alternative to UNIX commands like ls, cat, cp, mirror, diff, find etc. It supports filesystems and Amazon S3 compatible cloud storage service (AWS Signature v2 and v4).

Versions:

Module Default
module load MinIO-Client/2024-07-31T15-58-33Z

Miniconda3

Miniconda is a free minimal installer for conda. It is a small, bootstrap version of Anaconda that includes only conda, Python, the packages they depend on, and a small number of other useful packages.

Versions:

Module Default
module load Miniconda3/23.9.0-0

OpenSSL

The OpenSSL Project is a collaborative effort to develop a robust, commercial-grade, full-featured, and Open Source toolchain implementing the Secure Sockets Layer (SSL v2/v3) and Transport Layer Security (TLS v1) protocols as well as a full-strength general purpose cryptography library.

Versions:

Module Default
module load OpenSSL/1.1

S-Lang

S-Lang is a multi-platform programmer's library designed to allow a developer to create robust multi-platform software. It provides facilities required by interactive applications such as display/screen management, keyboard input, keymaps, and so on.

Versions:

Module Default
module load S-Lang/2.3.0

Tcl

Tcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, suitable for a very wide range of uses, including web and desktop applications, networking, administration, testing and many more.

Versions:

Module Default
module load Tcl/8.6.13

Trimmomatic

Trimmomatic performs a variety of useful trimming tasks for illumina paired-end and single ended data.The selection of trimming steps and their associated parameters are supplied on the command line.

Versions:

Module Default
module load Trimmomatic/0.39-Java-21.0.2

binutils

binutils: GNU binary utilities

Versions:

Module Default
module load binutils/2.40

bwakit

Bwakit is a self-consistent installation-free package of scripts and precompiled binaries, providing an end-to-end solution to read mapping.

Versions:

Module Default
module load bwakit/0.7.15_x64-linux

bzip2

bzip2 is a freely available, patent free, high-quality data compressor. It typically compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical compressors), whilst being around twice as fast at compression and six times faster at decompression.

Versions:

Module Default
module load bzip2/1.0.8

cURL

libcurl is a free and easy-to-use client-side URL transfer library, supporting DICT, FILE, FTP, FTPS, Gopher, HTTP, HTTPS, IMAP, IMAPS, LDAP, LDAPS, POP3, POP3S, RTMP, RTSP, SCP, SFTP, SMTP, SMTPS, Telnet and TFTP. libcurl supports SSL certificates, HTTP POST, HTTP PUT, FTP uploading, HTTP form based upload, proxies, cookies, user+password authentication (Basic, Digest, NTLM, Negotiate, Kerberos), file transfer resume, http proxy tunneling and more.

Versions:

Module Default
module load cURL/8.0.1

cuDNN

The NVIDIA CUDA Deep Neural Network library (cuDNN) is a GPU-accelerated library of primitives for deep neural networks.

Versions:

Module Default
module load cuDNN/9.2.1.18-CUDA-12.4.0
module load cuDNN/8.9.7.29-CUDA-12.4.0

ffnvcodec

FFmpeg nvidia headers. Adds support for nvenc and nvdec. Requires Nvidia GPU and drivers to be present (picked up dynamically).

Versions:

Module Default
module load ffnvcodec/12.1.14.0

flex

Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, sometimes called a tokenizer, is a program which recognizes lexical patterns in text.

Versions:

Module Default
module load flex/2.6.4

foss

GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.

Versions:

Module Default
module load foss/2023b

gettext

GNU 'gettext' is an important step for the GNU Translation Project, as it is an asset on which we may build many other steps. This package offers to programmers, translators, and even users, a well integrated set of tools and documentation

Versions:

Module Default
module load gettext/0.22
module load gettext/0.19.8.1

gfbf

GNU Compiler Collection (GCC) based compiler toolchain, including FlexiBLAS (BLAS and LAPACK support) and (serial) FFTW.

Versions:

Module Default
module load gfbf/2023b

gompi

GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support.

Versions:

Module Default
module load gompi/2023b

htop

An interactive process viewer for Unix

Versions:

Module Default
module load htop/3.3.0

iimkl

Intel C/C++ and Fortran compilers, alongside Intel Math Kernel Library (MKL).

Versions:

Module Default
module load iimkl/2023b

iimpi

Intel C/C++ and Fortran compilers, alongside Intel MPI.

Versions:

Module Default
module load iimpi/2023b

imkl

Intel oneAPI Math Kernel Library

Versions:

Module Default
module load imkl/2024.0.0
module load imkl/2023.2.0

intel-compilers

Intel C, C++ & Fortran compilers (classic and oneAPI)

Versions:

Module Default
module load intel-compilers/2023.2.1

intel

Compiler toolchain including Intel compilers, Intel MPI and Intel Math Kernel Library (MKL).

Versions:

Module Default
module load intel/2023b

iomkl

Compiler toolchain including Intel compilers, Open MPI and Intel Math Kernel Library (MKL).

Versions:

Module Default
module load iomkl/2023b

iompi

Intel C/C++ and Fortran compilers, alongside Open MPI.

Versions:

Module Default
module load iompi/2023b

libarchive

Multi-format archive and compression library

Versions:

Module Default
module load libarchive/3.6.2

libffi

The libffi library provides a portable, high level programming interface to various calling conventions. This allows a programmer to call any function specified by a call interface description at run-time.

Versions:

Module Default
module load libffi/3.2.1

libnsl

The libnsl package contains the public client interface for NIS(YP).

Versions:

Module Default
module load libnsl/1.3.0

libreadline

The GNU Readline library provides a set of functions for use by applications that allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. The Readline library includes additional functions to maintain a list of previously-entered command lines, to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.

Versions:

Module Default
module load libreadline/8.2
module load libreadline/8.0
module load libreadline/7.0

libtirpc

Libtirpc is a port of Suns Transport-Independent RPC library to Linux.

Versions:

Module Default
module load libtirpc/1.3.3

libtool

GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries behind a consistent, portable interface.

Versions:

Module Default
module load libtool/2.4.7

libxml2

Libxml2 is the XML C parser and toolchain developed for the Gnome project (but usable outside of the Gnome platform).

Versions:

Module Default
module load libxml2/2.9.10

ncurses

The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses.

Versions:

Module Default
module load ncurses/6.4
module load ncurses/6.3
module load ncurses/6.1
module load ncurses/6.0

p7zip

p7zip is a quick port of 7z.exe and 7za.exe (CLI version of 7zip) for Unix. 7-Zip is a file archiver with highest compression ratio.

Versions:

Module Default
module load p7zip/17.04

picard

A set of tools (in Java) for working with next generation sequencing data in the BAM format.

Versions:

Module Default
module load picard/2.25.1-Java-21

pkgconf

pkgconf is a program which helps to configure compiler and linker flags for development libraries. It is similar to pkg-config from freedesktop.org.

Versions:

Module Default
module load pkgconf/1.8.0

psi4

PSI4 is an open-source suite of ab initio quantum chemistry programs designed for efficient, high-accuracy simulations of a variety of molecular properties. We can routinely perform computations with more than 2500 basis functions running serially or in parallel.

Versions:

Module Default
module load psi4/1.9.1

rclone

Rclone is a command line program to sync files and directories to and from a variety of online storage services

Versions:

Module Default
module load rclone/1.67.0

shieldhit

SHIELD-HIT12A is a Monte Carlo particle transport program which is modified for proton and heavy ion particle therapy research

Versions:

Module Default
module load shieldhit/current

zlib

zlib is designed to be a free, general-purpose, legally unencumbered -- that is, not covered by any patents -- lossless data-compression library for use on virtually any computer hardware and operating system.

Versions:

Module Default
module load zlib/1.2.13

FLUENT

Ansys/Fluent

Versions:

Module Default
module load FLUENT/2024r1

ML-bundle

Bundle of modules for ML

Versions:

Module Default
module load ML-bundle/24.06a

NVHPC

C, C++ and Fortran compilers included with the NVIDIA HPC SDK (previously: PGI)

Versions:

Module Default
module load NVHPC/24.5-CUDA-12.4.0

cuSPARSELt

NVIDIA cuSPARSELt is a high-performance CUDA library dedicated to general matrix-matrix operations in which at least one operand is a sparse matrix

Versions:

Module Default
module load cuSPARSELt/0.6.1.0-CUDA-12.4.0

git-lfs

Git Large File Storage (LFS) replaces large files such as audio samples, videos, datasets, and graphics with text pointers inside Git, while storing the file contents on a remote server like GitHub.com

Versions:

Module Default
module load git-lfs/3.5.1

nvofbf

NVHPC based compiler toolchain, including OpenMPI for MPI support.

Versions:

Module Default
module load nvofbf/2023b

nvompic

NVHPC based compiler toolchain, including OpenMPI for MPI support.

Versions:

Module Default
module load nvompic/2023b

Ostatnia aktualizacja: 16 września 2024